BAC Information

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BAC

Clone NameB6Ng01-086K20
Chromosome4 (Build37)
Map Location 90,704,524 - 90,857,306
singlet/doubletdoublet
Overlap geneLOC664840, LOC664848
Upstream geneZfp352, LOC619842, LOC435792, Ppia-ps4_804.1
Downstream geneLOC100042274, Elavl2, LOC664864, LOC620016, LOC654475, 4930577H14Rik, LOC664886, 1700011H22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086K20.bB6Ng01-086K20.g
ACCDH900011DH900012
length9701,095
definitionDH900011|Mus musculus domesticus DNA, BAC clone: B6Ng01-086K20, 5' end.DH900012|Mus musculus domesticus DNA, BAC clone: B6Ng01-086K20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,704,524 - 90,705,491)(90,856,247 - 90,857,306)
sequence
gaattcaagaaggtagactccatcttagcgaggctgctgtggtccacatg
actctctgagcttcgccatgccacccaaagatgacaagaagaaagatgct
ggaaagttggccaaaaaggataaagacccagtaaataaatctggtggcaa
ggccaagaagaagaagtggtccaaaggcaaagttcgggacaagctgaaca
atcttgtcctgttcgacaaagcaacatacgacaagctctgtaaggaggtt
ccgaactataagcttattactccagccgtggtctctgagagactgaagat
tcatggttccttggccagggcagcccttcaggagctccttagtaaaggac
ttatcaagctgggttaaaagcacaagcccacataatttacaccagaaaca
caaagggtggagaagctacggctgctggtgaggattcatgaacaggttca
atcagctgtgcatttgggaaaataaaactttattgaataataaaaaaaaa
aataaccagaaaatcaaacaaccccattaaaaatagggctcagagctaaa
caaagaattctcacctaaggaataccgaatggctgagaaacacctgaaaa
aatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctg
agattccatctcacaccagtcagaatggctaagatcaaaaattcaggtga
caacagatgctggcgaggatgtggagaaagaggaacactcctccattgtt
ggtgggattgcaagcttgtacaaccactccggaaatcagtctggtggttc
ctcagaaaattggacatggtactactggaggatcccgaaatacttctcct
gggcatatatccataagatgttccaactagtaagaagacacatgctccac
tatgttcatagcagcccttatttataatagccagaagttggaaagaaccc
agatgcccctcaacagagga
gaattcagtaaaataatcaaaatcaacagctgttcactaactagaaagct
tgtttttatcagcaaaacattgttttaaattaaatatggcagcatttaag
agaattgaatgtttcgtgttaaaaaggaatctatttatgtgatatttaaa
gttttgtagtgcttgagattgaacagatcagtctcataattccaatataa
aatgcataattgactaattgatttatacttgtagtttcaggttgaaatat
tactaaattgatctgcagtgttggaatatttaaaagactttgattcacca
tatttataaatttaattcatttgatttaaaaggtttatttaattactcag
gaaggttttaagtcagacaattgaggtacttaaagaaaatcagatacatt
aaatttataagtgaattttaaaatgtctgaagaggtttaattatctgttt
gtaaatgaagctaaatatttctctaagtacccttaaaagcaatttctgga
acttcctggatcataaacagaatagaatttgtaatgagaagctgaaggat
aaactaggtttttaaattttcaccatgaaagaacaaaatagcaatattta
aacagtaccgcagcaccctgtgtgggccggggacagccggccaccttccg
gaccggaggacaggtgcccgcccggctggggaggcgacctaagccacagc
agcagcggtcgccatcttggtccgggacccgccgaacttaggaaattagt
ctgaacaggtgagagggtgcgccagagaacctgacagcttctggaacagg
cggaagcacagaggggctgaggcagcaccctgtgtgggccggggacagcc
ggccaccttccggaccggaggacaggtgcccacccggctggggaggcggc
ctaagccacagcagcagcggtcgccatcttggtcccgggactccaagaac
ttaggaatttagtctgcttaggtgagagtctgtactacctgggaactgcc
caagcacacagtgtctgagaaagttctgttttggcttcttcttcgcagag
agttcaaatacaagaatatctgcgccaccttccctgtagagagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_90704524_90705491
seq2: B6Ng01-086K20.b_46_1013

seq1  GAATTCAAGAAGGTAGACTCCATCTTAGCGAGGCTGCTGTGGTCCACATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAAGGTAGACTCCATCTTAGCGAGGCTGCTGTGGTCCACATG  50

seq1  ACTCTCTGAGCTTCGCCATGCCACCCAAAGATGACAAGAAGAAAGATGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTGAGCTTCGCCATGCCACCCAAAGATGACAAGAAGAAAGATGCT  100

seq1  GGAAAGTTGGCCAAAAAGGATAAAGACCCAGTAAATAAATCTGGTGGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTTGGCCAAAAAGGATAAAGACCCAGTAAATAAATCTGGTGGCAA  150

seq1  GGCCAAGAAGAAGAAGTGGTCCAAAGGCAAAGTTCGGGACAAGCTGAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAGAAGAAGAAGTGGTCCAAAGGCAAAGTTCGGGACAAGCTGAACA  200

seq1  ATCTTGTCCTGTTCGACAAAGCAACATACGACAAGCTCTGTAAGGAGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTCCTGTTCGACAAAGCAACATACGACAAGCTCTGTAAGGAGGTT  250

seq1  CCGAACTATAAGCTTATTACTCCAGCCGTGGTCTCTGAGAGACTGAAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAACTATAAGCTTATTACTCCAGCCGTGGTCTCTGAGAGACTGAAGAT  300

seq1  TCATGGTTCCTTGGCCAGGGCAGCCCTTCAGGAGCTCCTTAGTAAAGGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTTCCTTGGCCAGGGCAGCCCTTCAGGAGCTCCTTAGTAAAGGAC  350

seq1  TTATCAAGCTGGGTTAAAAGCACAAGCCCACATAATTTACACCAGAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAAGCTGGGTTAAAAGCACAAGCCCACATAATTTACACCAGAAACA  400

seq1  CAAAGGGTGGAGAAGCTACGGCTGCTGGTGAGGATTCATGAACAGGTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGTGGAGAAGCTACGGCTGCTGGTGAGGATTCATGAACAGGTTCA  450

seq1  ATCAGCTGTGCATTTGGGAAAATAAAACTTTATTGAATAATAAAAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTGTGCATTTGGGAAAATAAAACTTTATTGAATAATAAAAAAAAA  500

seq1  AATAACCAGAAAATCAAACAACCCCATTAAAAATAGGGCTCAGAGCTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCAGAAAATCAAACAACCCCATTAAAAATAGGGCTCAGAGCTAAA  550

seq1  CAAAGAATTCTCACCTAAGGAATACCGAATGGCTGAGAAACACCTGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAATTCTCACCTAAGGAATACCGAATGGCTGAGAAACACCTGAAAA  600

seq1  AATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTG  650

seq1  AGATTCCATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGA  700

seq1  CAACAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTT  750

seq1  GGTGGGATTGCAAGCTTGTACAACCACTCCGGAAATCAGTCTGGTGGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGATTGCAAGCTTGTACAACCACTCCGGAAATCAGTCTGGTGGTTC  800

seq1  CTCAGAAAATTGGACATGGTACTACTGGAGGATCCCGAAATACTTCTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAAATTGGACATGGTACTACTGGAGGATCCCGAAATACTTCTCCT  850

seq1  GGGCATATATCCATAAGATGTTCCAACTAGTAAGAAAGACACATGCTCCA  900
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGGCATATATCCATAAGATGTTCCAACTAGTAAG-AAGACACATGCTCCA  899

seq1  CTATGTTCATAGCAG-CCTTATTTATAATAGCCAGAAGTTGGAAAGAACC  949
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTATGTTCATAGCAGCCCTTATTTATAATAGCCAGAAGTTGGAAAGAACC  949

seq1  CAGATGCCCCTCAACAGAG  968
      |||||||||||||||||||
seq2  CAGATGCCCCTCAACAGAG  968

seq1: chr4_90856247_90857306
seq2: B6Ng01-086K20.g_110_1160 (reverse)

seq1  AGCTCTCTTACAGGGAAGGT-GCGCAGATA-TCTTGTATTTGGACCTCCT  48
      ||||||| |||||||||||| ||||||||| |||||||||| || |||  
seq2  AGCTCTC-TACAGGGAAGGTGGCGCAGATATTCTTGTATTT-GAACTC--  46

seq1  CCTGGCCGAAGAAGAAGGCCCAAAACAGGACCTTTCTCAGACACTGTGTT  98
       |||  |||||||||||  |||||||| || ||||||||||||||||| |
seq2  TCTG--CGAAGAAGAAG--CCAAAACA-GAACTTTCTCAGACACTGTG-T  90

seq1  GCTTTGGCAGTTCCCAGGTAGTACAGACTCTCACCTAAGCAGACTAAATT  148
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGCAGTTCCCAGGTAGTACAGACTCTCACCTAAGCAGACTAAATT  140

seq1  CCTAAGTTCCTTGGAGTCCCGGGACCAAGATGGCGACCGCTGCTGCTGTG  198
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGTT-CTTGGAGTCCCGGGACCAAGATGGCGACCGCTGCTGCTGTG  189

seq1  GCTTAGGCCGCCTCCCCAGCCGGGTGGGCACCTGTCCTCCGGTCCGGAAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGGCCGCCTCCCCAGCCGGGTGGGCACCTGTCCTCCGGTCCGGAAG  239

seq1  GTGGCCGGCTGTCCCCGGCCCACACAGGGTGCTGCCTCAGCCCCTCTGTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCGGCTGTCCCCGGCCCACACAGGGTGCTGCCTCAGCCCCTCTGTG  289

seq1  CTTCCGCCTGTTCCAGAAGCTGTCAGGTTCTCTGGCGCACCCTCTCACCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCGCCTGTTCCAGAAGCTGTCAGGTTCTCTGGCGCACCCTCTCACCT  339

seq1  GTTCAGACTAATTTCCTAAGTTCGGCGGGTCCCGGACCAAGATGGCGACC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGACTAATTTCCTAAGTTCGGCGGGTCCCGGACCAAGATGGCGACC  389

seq1  GCTGCTGCTGTGGCTTAGGTCGCCTCCCCAGCCGGGCGGGCACCTGTCCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGCTGTGGCTTAGGTCGCCTCCCCAGCCGGGCGGGCACCTGTCCT  439

seq1  CCGGTCCGGAAGGTGGCCGGCTGTCCCCGGCCCACACAGGGTGCTGCGGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTCCGGAAGGTGGCCGGCTGTCCCCGGCCCACACAGGGTGCTGCGGT  489

seq1  ACTGTTTAAATATTGCTATTTTGTTCTTTCATGGTGAAAATTTAAAAACC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTAAATATTGCTATTTTGTTCTTTCATGGTGAAAATTTAAAAACC  539

seq1  TAGTTTATCCTTCAGCTTCTCATTACAAATTCTATTCTGTTTATGATCCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTATCCTTCAGCTTCTCATTACAAATTCTATTCTGTTTATGATCCA  589

seq1  GGAAGTTCCAGAAATTGCTTTTAAGGGTACTTAGAGAAATATTTAGCTTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTCCAGAAATTGCTTTTAAGGGTACTTAGAGAAATATTTAGCTTC  639

seq1  ATTTACAAACAGATAATTAAACCTCTTCAGACATTTTAAAATTCACTTAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACAAACAGATAATTAAACCTCTTCAGACATTTTAAAATTCACTTAT  689

seq1  AAATTTAATGTATCTGATTTTCTTTAAGTACCTCAATTGTCTGACTTAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAATGTATCTGATTTTCTTTAAGTACCTCAATTGTCTGACTTAAA  739

seq1  ACCTTCCTGAGTAATTAAATAAACCTTTTAAATCAAATGAATTAAATTTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCCTGAGTAATTAAATAAACCTTTTAAATCAAATGAATTAAATTTA  789

seq1  TAAATATGGTGAATCAAAGTCTTTTAAATATTCCAACACTGCAGATCAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATGGTGAATCAAAGTCTTTTAAATATTCCAACACTGCAGATCAAT  839

seq1  TTAGTAATATTTCAACCTGAAACTACAAGTATAAATCAATTAGTCAATTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAATATTTCAACCTGAAACTACAAGTATAAATCAATTAGTCAATTA  889

seq1  TGCATTTTATATTGGAATTATGAGACTGATCTGTTCAATCTCAAGCACTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTTATATTGGAATTATGAGACTGATCTGTTCAATCTCAAGCACTA  939

seq1  CAAAACTTTAAATATCACATAAATAGATTCCTTTTTAACACGAAACATTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTTTAAATATCACATAAATAGATTCCTTTTTAACACGAAACATTC  989

seq1  AATTCTCTTAAATGCTGCCATATTTAATTTAAAACAATGTTTTGCTGATA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCTTAAATGCTGCCATATTTAATTTAAAACAATGTTTTGCTGATA  1039

seq1  AAAACAAGCTTT  1060
      ||||||||||||
seq2  AAAACAAGCTTT  1051