BAC Information

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BAC

Clone NameB6Ng01-086M24
Chromosome4 (Build37)
Map Location 100,202,415 - 100,338,819
singlet/doubletdoublet
Overlap geneUbe2u, LOC277707, LOC621573
Upstream geneLOC638890, LOC100042589, Foxd3, Alg6, Itgb3bp, BC020077, Pgm2, Ror1
Downstream geneCachd1, LOC100039747, Raver2, Jak1, E130102H24Rik, Ak3l1, LOC669460, Dnajc6, Leprot
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086M24.bB6Ng01-086M24.g
ACCDH900110DH900111
length726525
definitionDH900110|Mus musculus domesticus DNA, BAC clone: B6Ng01-086M24, 5' end.DH900111|Mus musculus domesticus DNA, BAC clone: B6Ng01-086M24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,338,094 - 100,338,819)(100,202,415 - 100,202,945)
sequence
gaattctacatcttgttccaaaggcaaacaggagaaatctggcttccagg
cagataggctgagggtcttaaagcccatgcccacaggacacacttcctcc
aacaaggctacacctcctaatggtgctattccctgggccaagcatattca
aaccaccacacctattcacacaaagaggagagccagagaggaggagtaat
ttacccaaaaatgacactaaagagatctgaattataattctggtatggtt
caatccaaaatcactccttgtcaccagtggtgatgtgtccctagcatgga
gtctttgctgagcactttatttcattgtaattgagctctctccctctctt
tgtccctgtccctcccctcccatccctcttcctccccttcccctcctccc
ctctcccactctctcagtggtgcttatatttgaacacaggaccttgtact
ttcaagtcaagcaaacagtcattgagctgtactctagctcttttggaaaa
tgaacctactgagctgttgtggggtggtccttggtctggactcaggactc
atgaaaaggaaggtgagatggtatgttagctctccctgggagctcccatc
taacaagcatcactgatgagtatggtcatggtctcaggccttgccaggtt
tcagcttcacagagagtgaggatctgattctctcactctctctctctctc
tctctctctctctctctctctctctc
caagtcaagtggtggaggtgaatgcctttagtcccagcatgcgggaggca
gaggcaggtagatctctgtgagttcgagtccatccttgactatgatagcc
agggctatacagagaaagagaaactcttgtctcagggaaaaaaatccagt
atgttacttataataatcacctaaaagaaagacgattcttcaccaagaat
tcactactttaatggaatggatgttttccctaaatgccagcccaagggtc
taatgcggcctggaagacagtgtggttgtgtgtgctcgtgtggatctgag
gaagaaaaaaattagactgtatataggaatgttgctggtgaaatcatgta
atttatctatcaaaagcaaatagcattgcattacaaagaaaagagtaaag
actccaaataacgaggctagcagaaagcatctagccagctaagtggttca
tctacaagctcagacttaagaaggagaggaaaaacagagaaggcagggga
cagggggaggggaggagagaatatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_100338094_100338819
seq2: B6Ng01-086M24.b_47_772 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAGAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAGAGAAT  50

seq1  CAGATCCTCACTCTCTGTGAAGCTGAAACCTGGCAAGGCCTGAGACCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCTCACTCTCTGTGAAGCTGAAACCTGGCAAGGCCTGAGACCATG  100

seq1  ACCATACTCATCAGTGATGCTTGTTAGATGGGAGCTCCCAGGGAGAGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATACTCATCAGTGATGCTTGTTAGATGGGAGCTCCCAGGGAGAGCTA  150

seq1  ACATACCATCTCACCTTCCTTTTCATGAGTCCTGAGTCCAGACCAAGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACCATCTCACCTTCCTTTTCATGAGTCCTGAGTCCAGACCAAGGAC  200

seq1  CACCCCACAACAGCTCAGTAGGTTCATTTTCCAAAAGAGCTAGAGTACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCACAACAGCTCAGTAGGTTCATTTTCCAAAAGAGCTAGAGTACAG  250

seq1  CTCAATGACTGTTTGCTTGACTTGAAAGTACAAGGTCCTGTGTTCAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATGACTGTTTGCTTGACTTGAAAGTACAAGGTCCTGTGTTCAAATA  300

seq1  TAAGCACCACTGAGAGAGTGGGAGAGGGGAGGAGGGGAAGGGGAGGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCACCACTGAGAGAGTGGGAGAGGGGAGGAGGGGAAGGGGAGGAAGA  350

seq1  GGGATGGGAGGGGAGGGACAGGGACAAAGAGAGGGAGAGAGCTCAATTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGGAGGGGAGGGACAGGGACAAAGAGAGGGAGAGAGCTCAATTAC  400

seq1  AATGAAATAAAGTGCTCAGCAAAGACTCCATGCTAGGGACACATCACCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAATAAAGTGCTCAGCAAAGACTCCATGCTAGGGACACATCACCAC  450

seq1  TGGTGACAAGGAGTGATTTTGGATTGAACCATACCAGAATTATAATTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACAAGGAGTGATTTTGGATTGAACCATACCAGAATTATAATTCAG  500

seq1  ATCTCTTTAGTGTCATTTTTGGGTAAATTACTCCTCCTCTCTGGCTCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTTAGTGTCATTTTTGGGTAAATTACTCCTCCTCTCTGGCTCTCC  550

seq1  TCTTTGTGTGAATAGGTGTGGTGGTTTGAATATGCTTGGCCCAGGGAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTGTGAATAGGTGTGGTGGTTTGAATATGCTTGGCCCAGGGAATA  600

seq1  GCACCATTAGGAGGTGTAGCCTTGTTGGAGGAAGTGTGTCCTGTGGGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCATTAGGAGGTGTAGCCTTGTTGGAGGAAGTGTGTCCTGTGGGCAT  650

seq1  GGGCTTTAAGACCCTCAGCCTATCTGCCTGGAAGCCAGATTTCTCCTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTTAAGACCCTCAGCCTATCTGCCTGGAAGCCAGATTTCTCCTGTT  700

seq1  TGCCTTTGGAACAAGATGTAGAATTC  726
      ||||||||||||||||||||||||||
seq2  TGCCTTTGGAACAAGATGTAGAATTC  726

seq1: chr4_100202415_100202945
seq2: B6Ng01-086M24.g_69_599

seq1  GAATTCCAAGCCAAGTGGTGGAGGTGAATGCCTTTAGTCCCAGCATGCGG  50
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGTCAAGTGGTGGAGGTGAATGCCTTTAGTCCCAGCATGCGG  50

seq1  GAGGCAGAGGCAGGTAGATCTCTGTGAGTTCGAGTCCATCCTTGACTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAGGCAGGTAGATCTCTGTGAGTTCGAGTCCATCCTTGACTATG  100

seq1  ATAGCCAGGGCTATACAGAGAAAGAGAAACTCTTGTCTCAGGGAAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCAGGGCTATACAGAGAAAGAGAAACTCTTGTCTCAGGGAAAAAAA  150

seq1  TCCAGTATGTTACTTATAATAATCACCTAAAAGAAAGACGATTCTTCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTATGTTACTTATAATAATCACCTAAAAGAAAGACGATTCTTCACC  200

seq1  AAGAATTCACTACTTTAATGGAATGGATGTTTTCCCTAAATGCCAGCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTCACTACTTTAATGGAATGGATGTTTTCCCTAAATGCCAGCCCA  250

seq1  AGGGTCTAATGCGGCCTGGAAGACAGTGTGGTTGTGTGTGCTCGTGTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTAATGCGGCCTGGAAGACAGTGTGGTTGTGTGTGCTCGTGTGGA  300

seq1  TCTGAGGAAGAAAAAAATTAGACTGTATATAGGAATGTTGCTGGTGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGAAGAAAAAAATTAGACTGTATATAGGAATGTTGCTGGTGAAAT  350

seq1  CATGTAATTTATCTATCAAAAGCAAATAGCATTGCATTACAAAGAAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAATTTATCTATCAAAAGCAAATAGCATTGCATTACAAAGAAAAGA  400

seq1  GTAAAGACTCCAAATAACGAGGCTAGCAGAAAGCATCTAGCCAGCTAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGACTCCAAATAACGAGGCTAGCAGAAAGCATCTAGCCAGCTAAGT  450

seq1  GGTTCATCTACAAGCTCAGACTTAAGAAGGAGAGGAAAAACAGAGAAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCATCTACAAGCTCAGACTTAAGAAGGAGAGGAAAAACAGAGAAGGC  500

seq1  AGGGGACAGGGGGAGGGGAGGAGAGAATATG  531
      |||||||||||||||||||||||||||||||
seq2  AGGGGACAGGGGGAGGGGAGGAGAGAATATG  531