BAC Information

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BAC

Clone NameB6Ng01-086P05
Chromosome4 (Build37)
Map Location 67,361,969 - 67,425,957
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667499, Tlr4, LOC100039379, Hmgb1-rs18
Downstream geneLOC433715, Tcp1-ps1, Dbc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086P05.bB6Ng01-086P05.g
ACCDH900212DH900213
length1,1631,224
definitionDH900212|Mus musculus domesticus DNA, BAC clone: B6Ng01-086P05, 5' end.DH900213|Mus musculus domesticus DNA, BAC clone: B6Ng01-086P05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,424,788 - 67,425,957)(67,361,969 - 67,363,227)
sequence
gaattctctgagttggttgaaaacaggaagcataagagaagcagaggcga
aggtgaagcatgctctgtagataccattatggtggcgcataggcttatat
ctcagtccaaagctagcaactaatgtgaacactgcattcaggcagcccag
cagagcagaccgcatgacgatcgtggtgacctggggtgagatgcagaaga
gagacctttcagaacatggcctgatgtgaagagtagatcaaaagaaaggg
caaatctctgctcctctagtgtgcttcgtatctttgcttgaaagacaact
cagaagggcctgattacatacacttgtcaaagcaaagcacactggcgaag
gtttagtaattcagtataaatttcgaaaaaaagatctgctccaattaata
tttccccattgctatatacatcaaatttagaacttgtggttcatgaaaat
tgtcagccacaaccatataagagtccgaccccctccctggaatgatgata
ttgtcaaactgagtttatgaggaaacaataccagtttgctttaaagccac
tcacaggaatttgattgtctctgctcaagttctgtaaaggggttctacac
ttcctagtttagcactgttcccgcctataggttgtacaagtctccaagga
cttcttatccagaagagacaatcaacttctccttctgtagggtaactgat
aataaactttgtaaaagaaatgctttatttttatgctacttgagttggag
gctgttagaaaaggttagaaatagtatatggatagtgctaaatatatgct
gttgattcaaaactaactcaaaagaagtgacagtctccaaagtgcctgag
acggtttagtctttgacttcaagattctattacaaaccaaacagtatttt
atgaagctctagtaagtaatgcacttttaaaaaggatttaagcgaataaa
aagaataaacattgtttaatatattgcattttcctgtaattactcaatct
gatttgtccacccattcacatgtaattagagtgtcatttctacacatgga
ctgggcactattggagagatgatctcccatgaacagttgttatcagaatg
taggtctcagaaagtaggcacaatgggagaagttgactagtttgcagctt
ctagctagaacaa
gaattcttcagttgtgactcagacagaactcttgccagacccaaaggtgc
tcagggatgctctcctactcactcctcttgcttatgttattgacacctgc
tgtgctgcacgaagttcttagcaatcagtgaaagtaggattcaacatgaa
aacaaacttacatctatatttaggctttagtaccctctggataacattta
ctgtcagcacaactaaataatgttgaacaaatatgcttcagattcctttg
ttcctgcagcgatacagtaagttccctgaagggactgctcctgcctgtct
tcttcagagaagggcccagcatttattgaactgttttgatatggagcagg
agcttggtatctggtttatgttttttttttcttttaattggctctgtatt
agtaagtggaccaatgaatgaatgaataatatgtttttagtcagtaactt
tttttttcttccctttcccctttctgctctcccttatacaccatgttaaa
ttgagttgacagtaaatctcctcctcaagtacatgttacaaaaataagga
acgaaagaagtaataaaagtaaagaacagtgagtgagttcctaagcaagg
ggaccctgaactactccttaatgtagggaacaaagcttcatgtctctccc
cttcataggttggtcaagcaagcgccatacattcagtgaacggtagctgt
aacaggtcaaaaccaaggtgttaaagaaagcaaaggctcacactgtgact
cttcagagttcgggtaagtgaacaccatatatggctcttttgggatatgt
gtgataagaatgggaatgtctgtgtactctgcccttcgaccagttgtgaa
agaggggaaaaaaaggaaaagaaaagaaagaagagcagtgttgtcatatt
cagaatttcatgaggatctcagaaacttactccccttattctttctcatc
tactgtctttctgctcacactctctctcctcccatctgtctctctccctc
taatttcctccccctctgttaggcccaccattttcccacagaagtagagt
aagcatcactagccatactttgtgtttatttcaggtagggtctctgtaac
caattctcacgcctgatttcactcttcatgctccatatgaggcagcgaga
gatatggctagatatactgtaacgtaattgagaaaaatacatcggttatt
tttcaggccatatttcaaatagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_67424788_67425957
seq2: B6Ng01-086P05.b_48_1210 (reverse)

seq1  TTGTTCTAGCTAGAAGCTGCAAAACTATGTCAAAACTCT-CCATTGTGCC  49
      |||||||||||||||||||| |||||| ||| ||  ||| ||||||||||
seq2  TTGTTCTAGCTAGAAGCTGC-AAACTA-GTC-AACTTCTCCCATTGTGCC  47

seq1  TACTTTCTGAGAACTTACATTCTGATAAC-ACTG-TCATGTGAGATCATC  97
      ||||||||||| || |||||||||||||| |||| ||||| |||||||||
seq2  TACTTTCTGAG-ACCTACATTCTGATAACAACTGTTCATGGGAGATCATC  96

seq1  TCT-CAATAGTGCCCAGTTCAATGTGTTAGAAATGACAACTCTAATTACA  146
      ||| ||||||||||||| || ||||| |||||||||| ||||||||||||
seq2  TCTCCAATAGTGCCCAG-TCCATGTG-TAGAAATGAC-ACTCTAATTACA  143

seq1  TGTTGAATGGGTGGACAAATCAGAATTGAGTAATTACAGGAAAATGCAAT  196
      || |||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TG-TGAATGGGTGGACAAATCAG-ATTGAGTAATTACAGGAAAATGCAAT  191

seq1  ATATTAAACAATGTTTTATTCTTTTTTATTCGCTTAAATCCTTTTTAAAA  246
      ||||||||||||| ||||||| ||||||||||||||||||||||||||||
seq2  ATATTAAACAATG-TTTATTC-TTTTTATTCGCTTAAATCCTTTTTAAAA  239

seq1  GTGCATTACTTACTAGAGCTTCATAAAATACTGTTTGGTTTGTAATAGAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATTACTTACTAGAGCTTCATAAAATACTGTTTGGTTTGTAATAGAA  289

seq1  TCTTGAAGTCAAAGACTAAACCGTCTCAGGCACTTTGGAGACTGTCACTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAGTCAAAGACTAAACCGTCTCAGGCACTTTGGAGACTGTCACTT  339

seq1  CTTTTGAGTTAGTTTTGAATCAACAGCATATATTTAGCACTATCCATATA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGAGTTAGTTTTGAATCAACAGCATATATTTAGCACTATCCATATA  389

seq1  CTATTTCTAACCTTTTCTAACAGCCTCCAACTCAAGTAGCATAAAAATAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCTAACCTTTTCTAACAGCCTCCAACTCAAGTAGCATAAAAATAA  439

seq1  AGCATTTCTTTTACAAAGTTTATTATCAGTTACCCTACAGAAGGAGAAGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTCTTTTACAAAGTTTATTATCAGTTACCCTACAGAAGGAGAAGT  489

seq1  TGATTGTCTCTTCTGGATAAGAAGTCCTTGGAGACTTGTACAACCTATAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGTCTCTTCTGGATAAGAAGTCCTTGGAGACTTGTACAACCTATAG  539

seq1  GCGGGAACAGTGCTAAACTAGGAAGTGTAGAACCCCTTTACAGAACTTGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGAACAGTGCTAAACTAGGAAGTGTAGAACCCCTTTACAGAACTTGA  589

seq1  GCAGAGACAATCAAATTCCTGTGAGTGGCTTTAAAGCAAACTGGTATTGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGACAATCAAATTCCTGTGAGTGGCTTTAAAGCAAACTGGTATTGT  639

seq1  TTCCTCATAAACTCAGTTTGACAATATCATCATTCCAGGGAGGGGGTCGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCATAAACTCAGTTTGACAATATCATCATTCCAGGGAGGGGGTCGG  689

seq1  ACTCTTATATGGTTGTGGCTGACAATTTTCATGAACCACAAGTTCTAAAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTATATGGTTGTGGCTGACAATTTTCATGAACCACAAGTTCTAAAT  739

seq1  TTGATGTATATAGCAATGGGGAAATATTAATTGGAGCAGATCTTTTTTTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTATATAGCAATGGGGAAATATTAATTGGAGCAGATCTTTTTTTC  789

seq1  GAAATTTATACTGAATTACTAAACCTTCGCCAGTGTGCTTTGCTTTGACA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTATACTGAATTACTAAACCTTCGCCAGTGTGCTTTGCTTTGACA  839

seq1  AGTGTATGTAATCAGGCCCTTCTGAGTTGTCTTTCAAGCAAAGATACGAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTATGTAATCAGGCCCTTCTGAGTTGTCTTTCAAGCAAAGATACGAA  889

seq1  GCACACTAGAGGAGCAGAGATTTGCCCTTTCTTTTGATCTACTCTTCACA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTAGAGGAGCAGAGATTTGCCCTTTCTTTTGATCTACTCTTCACA  939

seq1  TCAGGCCATGTTCTGAAAGGTCTCTCTTCTGCATCTCACCCCAGGTCACC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCCATGTTCTGAAAGGTCTCTCTTCTGCATCTCACCCCAGGTCACC  989

seq1  ACGATCGTCATGCGGTCTGCTCTGCTGGGCTGCCTGAATGCAGTGTTCAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATCGTCATGCGGTCTGCTCTGCTGGGCTGCCTGAATGCAGTGTTCAC  1039

seq1  ATTAGTTGCTAGCTTTGGACTGAGATATAAGCCTATGCGCCACCATAATG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTGCTAGCTTTGGACTGAGATATAAGCCTATGCGCCACCATAATG  1089

seq1  GTATCTACAGAGCATGCTTCACCTTCGCCTCTGCTTCTCTTATGCTTCCT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTACAGAGCATGCTTCACCTTCGCCTCTGCTTCTCTTATGCTTCCT  1139

seq1  GTTTTCAACCAACTCAGAGAATTC  1170
      ||||||||||||||||||||||||
seq2  GTTTTCAACCAACTCAGAGAATTC  1163

seq1: chr4_67361969_67363227
seq2: B6Ng01-086P05.g_67_1290

seq1  GAATTCTTCAGTTGTGACTCAGACAGAACTCTTGCCAGACCCAAAGGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGTTGTGACTCAGACAGAACTCTTGCCAGACCCAAAGGTGC  50

seq1  TCAGGGATGCTCTCCTACTCACTCCTCTTGCTTATGTTATTGACACCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGATGCTCTCCTACTCACTCCTCTTGCTTATGTTATTGACACCTGC  100

seq1  TGTGCTGCACGAAGTTCTTAGCAATCAGTGAAAGTAGGATTCAACATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGCACGAAGTTCTTAGCAATCAGTGAAAGTAGGATTCAACATGAA  150

seq1  AACAAACTTACATCTATATTTAGGCTTTAGTACCCTCTGGATAACATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACTTACATCTATATTTAGGCTTTAGTACCCTCTGGATAACATTTA  200

seq1  CTGTCAGCACAACTAAATAATGTTGAACAAATATGCTTCAGATTCCTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGCACAACTAAATAATGTTGAACAAATATGCTTCAGATTCCTTTG  250

seq1  TTCCTGCAGCGATACAGTAAGTTCCCTGAAGGGACTGCTCCTGCCTGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCAGCGATACAGTAAGTTCCCTGAAGGGACTGCTCCTGCCTGTCT  300

seq1  TCTTCAGAGAAGGGCCCAGCATTTATTGAACTGTTTTGATATGGAGCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGAGAAGGGCCCAGCATTTATTGAACTGTTTTGATATGGAGCAGG  350

seq1  AGCTTGGTATCTGGTTTATGTTTTTTTTTTCTTTTAATTGGCTCTGTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGGTATCTGGTTTATGTTTTTTTTTTCTTTTAATTGGCTCTGTATT  400

seq1  AGTAAGTGGACCAATGAATGAATGAATAATATGTTTTTAGTCAGTAACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTGGACCAATGAATGAATGAATAATATGTTTTTAGTCAGTAACTT  450

seq1  TTTTTTTCTTCCCTTTCCCCTTTCTGCTCTCCCTTATACACCATGTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTTCCCTTTCCCCTTTCTGCTCTCCCTTATACACCATGTTAAA  500

seq1  TTGAGTTGACAGTAAATCTCCTCCTCAAGTACATGTTACAAAAATAAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTGACAGTAAATCTCCTCCTCAAGTACATGTTACAAAAATAAGGA  550

seq1  ACGAAAGAAGTAATAAAAGTAAAGAACAGTGAGTGAGTTCCTAAGCAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAAGAAGTAATAAAAGTAAAGAACAGTGAGTGAGTTCCTAAGCAAGG  600

seq1  GGACCCTGAACTACTCCTTAATGTAGGGAACAAAGCTTCATGTCTCTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCTGAACTACTCCTTAATGTAGGGAACAAAGCTTCATGTCTCTCCC  650

seq1  CTTCATAGGTTGGTCAAGCAAGCGCCATACATTCAGTGAACGGTAGCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATAGGTTGGTCAAGCAAGCGCCATACATTCAGTGAACGGTAGCTGT  700

seq1  AACAGGTCAAAACCAAGGTGTTAAAGAAAGCAAAGGCTCACACTGTGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGTCAAAACCAAGGTGTTAAAGAAAGCAAAGGCTCACACTGTGACT  750

seq1  CTTCAGAGTTCGGGTAAGTGAACACCATATATGGCTCTTTTGGGATATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGAGTTCGGGTAAGTGAACACCATATATGGCTCTTTTGGGATATGT  800

seq1  GTGATAAGAATGGGAATGTCTGTGTACTCTGCCCTTCGACCAGTTGTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAAGAATGGGAATGTCTGTGTACTCTGCCCTTCGACCAGTTGTGAA  850

seq1  AGAGGGGAAAAAAAAGGAAAAAGAAAAGAAAAGAAAGAGCAAGTGTTGTC  900
      ||||||||||||||  | |||||||||||||   |||||| |||||||||
seq2  AGAGGGGAAAAAAA--GGAAAAGAAAAGAAA--GAAGAGC-AGTGTTGTC  895

seq1  ATATTCAGAATTTCATGAGGATCTCAGAAAACTTTACTCCCCTTATTCTT  950
      ||||||||||||||||||||||||||||||   |||||||||||||||||
seq2  ATATTCAGAATTTCATGAGGATCTCAGAAA--CTTACTCCCCTTATTCTT  943

seq1  TCTCATCTTACCTGTCCTTTCCTGCTCACACTCTCTCTCCCTCCCATCTG  1000
      ||||||||   |||||  || ||||||||||||||||| |||||||||||
seq2  TCTCATCT--ACTGTC--TTTCTGCTCACACTCTCTCT-CCTCCCATCTG  988

seq1  TCTTCTCTCCCTCTAATTTCCTCCCCCTCTGTCTAAGCCCACCATTTTCA  1050
      || ||||||||||||||||||||||||||||| || ||||||||||||| 
seq2  TC-TCTCTCCCTCTAATTTCCTCCCCCTCTGT-TAGGCCCACCATTTTCC  1036

seq1  CACAGACAGTAGAGTAAAGGCATTCAACTAGCATAACTTTGTGTTTTATT  1100
      |||||| ||||||||||  ||||   ||||||   |||||||| ||||||
seq2  CACAGA-AGTAGAGTAA--GCAT--CACTAGCCATACTTTGTG-TTTATT  1080

seq1  TCAGGGGTTAGGAGTCTCTGTAACACAAATCTCACG-CTGATTTCACTCT  1149
      |||||   |||| ||||||||||| ||| ||||||| |||||||||||||
seq2  TCAGG---TAGG-GTCTCTGTAAC-CAATTCTCACGCCTGATTTCACTCT  1125

seq1  TCATGCTCACATATTTGAGTGCCAAAGC-AGAGTATTGTCCATAGATAAT  1198
      |||||||| ||||  |||| ||   ||| ||||   || |  ||||||  
seq2  TCATGCTC-CATA--TGAG-GC---AGCGAGAGATATGGC--TAGATA--  1164

seq1  TACTGTAACAGTTAATTTGAGAAAAATACATCAG-TATATTTCAAGGCAT  1247
      ||||||||| ||  | |||||||||||||||| | ||| ||||| | |||
seq2  TACTGTAAC-GT--AATTGAGAAAAATACATCGGTTATTTTTCAGGCCAT  1211

seq1  A-TTCAAATAGAT  1259
      | |||||||||||
seq2  ATTTCAAATAGAT  1224