BAC Information

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BAC

Clone NameB6Ng01-086P17
Chromosome4 (Build37)
Map Location 118,402,692 - 118,403,908
singlet/doubletsinglet
Overlap genenone
Upstream geneKlf17, Ppia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn, St3gal3, Jmjd2a, Ptprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340
Downstream geneOlfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086P17.bB6Ng01-086P17.g
ACCDH900236DH900237
length1,2091,188
definitionDH900236|Mus musculus domesticus DNA, BAC clone: B6Ng01-086P17, 5' end.DH900237|Mus musculus domesticus DNA, BAC clone: B6Ng01-086P17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttaatactatggacaaagctttcaactctggccccagaagcaaa
aaggtcatcaaactgtcagaaattaagacgattataaattgacatctgtt
taaaatgttgatcaaaaagtgactctcaagaacatgtaaaataattgtat
ataacaatacaataagtattatcaggaaaactgtccaactcatataatgg
acatgtgagggtcattatatcacagcaattgtggtttttttctcagataa
ctgtagatcccattcctccaaagatgtgtctctttgtagcagacagagac
cattacagaaaaccacaactggttaaaacgcacaaagagactggttgtgg
tgtgtccagttccagttaatgtatctacaacacaaactaaggcttgggac
catcatggaagaaggctcagaatgattgcaagaaccagagggctaggaaa
ttgctgtattattgtgtctcaggaattgacggcgaagcttcaccaatgta
atatggctccccatatccctatttttcttgagggagagtagaatctctca
ctgaacttgatgctcaccagctggctcagtggcagaaacttaatccgagc
tatctcccagaccctatttccatgttttatatgccgtctatggtttgaag
tcctccaggtcctaccacaatcttcttaagccctaagaacaactttcatc
accttatcctggcactcaaggtccccacaccccaaactcctgactttccc
aatccaaggttcttcgcaacccatggtggcgtcatctccctatgctacct
cacaatccagtgtggacagatttatgagcacccactggaataaataaatt
agaccatcagatccaacctaaattataggtatatttgctacaactgtttc
atatatgtttatatttagccctataaactgtcctgtcttacaattgcttc
agtttgctattgtgaaaagtgaggtacagagggttgcccttttgtcacta
ttgcactcttattaagtggtaggaccagtatttgatttttagtcttctcg
ggtttgctctcatgagagtattatcattactcatcttgctaggatctatg
aagatgcactgttgcctgatcatattcccttccctcagaaagtcaaggta
tttcaagctacaaactttcagccaccacacatagtcctagattcccagcc
agagaacag
gaattccacacccctaagccccttaccccataaaagcccctggctttcga
gcctcgtggccggcatctgttatctcctgtgtgggattcatgccggtccg
gagctccgtaattaaacgtcctcatgtaattacagcgagtgggtccttgt
gtttctttgggtgctctcacactcccgagactagagtgggggtccctgaa
agggggtcttacattgtgaaagggagtgtgtctatgaataggtagggcag
ggggtgtgacatttcaaaagccaaatttatttccagttttctccctttct
ctccacttatacttgtggatcagatgtaagccctcagctattgcttaggc
aaccatgctagcctgcctgaggtcaagcctcttgctgtaatggtcatggg
cccacactctgaaattgcaagcccccactaaaaaacatttttactataag
ttgccttgctcataatgtctccttatagcacaaaagatgtctaagacaag
ggcatagtaacgatgacaaagaagccatgtaataggaggctgtgtcactt
ggtaatgttgcatccccagccaggaagccgacagacaaattccagtttca
gtacacagtcttcttttcaagactgtctagaaccctaggcctggatgctg
tgatggtttaaatgagatgttgccacggctctaagcatttgactgctttg
cctccagttattaacactgtttgtattgttctaggagatgttgctttgat
ggaagaactgtatcactaggtgcatgcactgaagttcccaagtccatcac
cattcttagtgtacactcattattacctgattggggtttgagatgtcagc
tcttagcatcatggtctaattgccatgggtccactctgccatcacagcct
tttgtctctctggaacagatggtgacacccacaatcagaatgggtcaccc
ctcatcagttaagcattatgccagcagatttgctgacgaccatgatatag
ctgtctctgtgaggctagcaagtgctggcaacacagaagttgaatgctca
cagttcagctatgatggtatcacaggtccctcaatggagggccttagaga
agtatcccaaggaactgtaatgtctgcaccattaggtggtacatctattg
acctaccagttatactctcgatgaagcctccctgatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_118402692_118403908
seq2: B6Ng01-086P17.b_47_1255

seq1  GAATTCTTAATACTATGGACAAAGCTTTCAACTCTGGCCCCAGAAGCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAATACTATGGACAAAGCTTTCAACTCTGGCCCCAGAAGCAAA  50

seq1  AAGGTCATCAAACTGTCAGAAATTAAGACGATTATAAATTGACATCTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCATCAAACTGTCAGAAATTAAGACGATTATAAATTGACATCTGTT  100

seq1  TAAAATGTTGATCAAAAAGTGACTCTCAAGAACATGTAAAATAATTGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGTTGATCAAAAAGTGACTCTCAAGAACATGTAAAATAATTGTAT  150

seq1  ATAACAATACAATAAGTATTATCAGGAAAACTGTCCAACTCATATAATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAATACAATAAGTATTATCAGGAAAACTGTCCAACTCATATAATGG  200

seq1  ACATGTGAGGGTCATTATATCACAGCAATTGTGGTTTTTTTCTCAGATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGAGGGTCATTATATCACAGCAATTGTGGTTTTTTTCTCAGATAA  250

seq1  CTGTAGATCCCATTCCTCCAAAGATGTGTCTCTTTGTAGCAGACAGAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGATCCCATTCCTCCAAAGATGTGTCTCTTTGTAGCAGACAGAGAC  300

seq1  CATTACAGAAAACCACAACTGGTTAAAACGCACAAAGAGACTGGTTGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACAGAAAACCACAACTGGTTAAAACGCACAAAGAGACTGGTTGTGG  350

seq1  TGTGTCCAGTTCCAGTTAATGTATCTACAACACAAACTAAGGCTTGGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCAGTTCCAGTTAATGTATCTACAACACAAACTAAGGCTTGGGAC  400

seq1  CATCATGGAAGAAGGCTCAGAATGATTGCAAGAACCAGAGGGCTAGGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGGAAGAAGGCTCAGAATGATTGCAAGAACCAGAGGGCTAGGAAA  450

seq1  TTGCTGTATTATTGTGTCTCAGGAATTGACGGCGAAGCTTCACCAATGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTATTATTGTGTCTCAGGAATTGACGGCGAAGCTTCACCAATGTA  500

seq1  ATATGGCTCCCCATATCCCTATTTTTCTTGAGGGAGAGTAGAATCTCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGCTCCCCATATCCCTATTTTTCTTGAGGGAGAGTAGAATCTCTCA  550

seq1  CTGAACTTGATGCTCACCAGCTGGCTCAGTGGCAGAAACTTAATCCGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTTGATGCTCACCAGCTGGCTCAGTGGCAGAAACTTAATCCGAGC  600

seq1  TATCTCCCAGACCCTATTTCCATGTTTTATATGCCGTCTATGGTTTGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCCCAGACCCTATTTCCATGTTTTATATGCCGTCTATGGTTTGAAG  650

seq1  TCCTCCAGGTCCTACCACAATCTTCTTAAGCCCTAAGAACAACTTTCATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCAGGTCCTACCACAATCTTCTTAAGCCCTAAGAACAACTTTCATC  700

seq1  ACCTTATCCTGGCACTCAAGGTCCCCACACCCCAAACTCCTGACTTTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTATCCTGGCACTCAAGGTCCCCACACCCCAAACTCCTGACTTTCCC  750

seq1  AATCCAAGGTTCTTCGCAACCCATGGTGGCGTCATCTCCCTATGCTACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAAGGTTCTTCGCAACCCATGGTGGCGTCATCTCCCTATGCTACCT  800

seq1  CACAATCCAGTGTGGACAGATTTATGAGCACCCACTGGAATAAATAAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATCCAGTGTGGACAGATTTATGAGCACCCACTGGAATAAATAAATT  850

seq1  AGACCATCAGATCCAACCTAAATTATAGGTATATTTGCTACAACTGTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCATCAGATCCAACCTAAATTATAGGTATATTTGCTACAACTGTTTC  900

seq1  ATATATGTTTATATTTAGCCCTATAAACTGTCCTGTCTTACAATTGCTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTTTATATTTAGCCCTATAAACTGTCCTGTCTTACAATTGCTTC  950

seq1  AGTTTGCTATTGTGAAAAGTGAGGTACAGAGGGTTGCCCTTTTGTCAACT  1000
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGTTTGCTATTGTGAAAAGTGAGGTACAGAGGGTTGCCCTTTTGTC-ACT  999

seq1  ATTGCACTCTTATTAAGTGGTAGGACCAGTATTTGATTTTAAGTCTTCCT  1050
      |||||||||||||||||||||||||||||||||||||||| |||||| ||
seq2  ATTGCACTCTTATTAAGTGGTAGGACCAGTATTTGATTTTTAGTCTT-CT  1048

seq1  CGGTTTTGCTCTCATGGAGAGTATTTATCATTACCTCATCTTGGCTTAAG  1100
      ||| ||||||||||| ||||||| ||||||||| |||||||||   || |
seq2  CGGGTTTGCTCTCAT-GAGAGTA-TTATCATTA-CTCATCTTG--CTAGG  1093

seq1  ATCTATGAAGGATGCCACTGTTGCTTGAATCATATTCCCTTCCCTCCAGA  1150
      ||||||||| |||| ||||||||| || ||||||||||||||||| ||||
seq2  ATCTATGAA-GATG-CACTGTTGCCTG-ATCATATTCCCTTCCCT-CAGA  1139

seq1  AAGTCAAAGTATTTCAGGGCTACAAAATTTCAG-CACACAACATAGTCC-  1198
      ||||||| ||||||||  |||||||| |||||| |||   ||||||||| 
seq2  AAGTCAAGGTATTTCA-AGCTACAAACTTTCAGCCACCACACATAGTCCT  1188

seq1  AGA-TCCCAG-CAGAGCACAG  1217
      ||| |||||| ||||| ||||
seq2  AGATTCCCAGCCAGAGAACAG  1209