BAC Information

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BAC

Clone NameB6Ng01-087A18
Chromosome4 (Build37)
Map Location 36,355,277 - 36,469,226
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC621227, Lingo2
Downstream geneLOC100042132, LOC545600, LOC621458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087A18.bB6Ng01-087A18.g
ACCDH900281DH900282
length1,1721,211
definitionDH900281|Mus musculus domesticus DNA, BAC clone: B6Ng01-087A18, 5' end.DH900282|Mus musculus domesticus DNA, BAC clone: B6Ng01-087A18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,355,277 - 36,356,465)(36,468,020 - 36,469,226)
sequence
gaattccacagcaaaacactaggagaagcttgaagaatcctgcaaagtag
gcagaggagacagagacaccaagaatatacaagatcttggcccacaaaat
caactgtcctgcacttaagggtgctcacagaagtcagggagcctgtaaag
atatgactaagttactctgccattcacattatgatttagtagcttgttat
tgtaggaatcttggcagtgggaatggggactgtccctgaatcttcttcct
actttacctactttttcctacttttcccctactgggttgccttgatattg
aggcttgaagtaatggtatgtgtctggtcttattctagtgagatatgcag
tgtttagctgattaagaaacaactgggtgtatatgttgccctaaaatgta
aaaaaagcatacctatacttccttatctgagggttaaaaaatttagcttg
taggttcatatctagtcattttattcagtgtctttcaggaatgtgaggct
gactgataggaggaagggactaaataacattcattgggatgagaaatgaa
cacagtccagtgcctctcttgtctatgcagagcccattatggagtggcca
tacaaacaatacatcctttaaatcagaacaaagaaagcctctaagatacc
tgtatctcacaataaattaccaacatttaaataccaaaaccattgtttta
ctaaagtaaagcacaattgtagcagtgctggggccatgcccaggtaggtt
tttcttttggtactttcttgaatgtaagccgatggggcagagcatcagtg
gaggcaagatatggtttcacaagatatttagtgtttctgtttaataataa
aacctatcttagatctaagtcactttggatcagtagctaacctccttgag
taccactgaggccagaagctgcagtctctggcatatagcacatcatcata
aaacatcaggggattaagtaaagggtaaattgctagagcctttttccttt
gtccagatgactcttacttgtcagctaggggaaatttggagcaataaact
tctatgatcaggagaagatggttacccttaagaggtaaagtttacacggg
cagtacagataacctcagataactcatgtacaaatcatgctttcatctta
catctcattcaatcagtaggcc
gaattcagtgagaattatcttcaatgtagattaaaaaactaaacagtctg
agatagtgtttcctcatgaactataaacaataggagattagaccttttgt
gaagcttggcatcaaatcaggttgataaaaaatgtcttagaacacgagac
tatgtagaacacttcaaaccaggtaatcctgtctatacctaaatcaatat
catatagtttagcactatatgattagtaagatgtaatgtttgaaggacag
ttctttctatagaggaagagtaagtgaaattaggctacttctgagaataa
agatacatattaatgattgaaaggtaaaatttataatggagattgtttta
tatgttctgactaacagtgtcttcctttaaaaatctattaatttttcttt
aaaaaaataagatgaaatggaaaatataacttttaaatcctcaggtatgt
tcttattttgaattcacatgcatgtgtacatatgcacacacacacacaca
cacacacacacacacactagcttactaactataatttacactaagaaaat
attgtaatttatgattttcagagaattttcctatgtaatcgttgtggtgg
tgtaactgagaaggtcccccatagacaaatatgtttgaacattttatcct
aattggtggaaatgtttggggaaaatgtagtaatgagattttttcgtttg
tttgtttgttttcgcatttttaaaatttatttgtttacatttcaaatgtt
atcccctttcctggtctcctctctgagaactccccaccctatcccccttc
ccttgcctctaagagggtgctcctccacctacccactcactcctgcatca
cccctctagcatccctgttctttggggcatcaagcctccacaggaccaaa
agcctcccctcccactgatgtcagatgatacagtcctctgctacatatgc
tgtgggagccgtgtgctggctcatgtatactctctgctttaatatccctg
gtaggtcctaatgcttccagccacctgtcaaggagctttttggatccatg
ggatgaaaacaacacacatcactctacacatctacacaccactcttccac
tcagttaacaagatcttgtgcaagctcaagaaaagaaccagaaaccccag
catgaaaggagaaaacaatgaattcaaagcctctttccttctctcaagga
gacttttgaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_36355277_36356465
seq2: B6Ng01-087A18.b_46_1217

seq1  GAATTCCACAGCAAAACACTAGGAGAAGCTTGAAGAATCCTGCAAAGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGCAAAACACTAGGAGAAGCTTGAAGAATCCTGCAAAGTAG  50

seq1  GCAGAGGAGACAGAGACACCAAGAATATACAAGATCTTGGCCCACAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGAGACAGAGACACCAAGAATATACAAGATCTTGGCCCACAAAAT  100

seq1  CAACTGTCCTGCACTTAAGGGTGCTCACAGAAGTCAGGGAGCCTGTAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTCCTGCACTTAAGGGTGCTCACAGAAGTCAGGGAGCCTGTAAAG  150

seq1  ATATGACTAAGTTACTCTGCCATTCACATTATGATTTAGTAGCTTGTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGACTAAGTTACTCTGCCATTCACATTATGATTTAGTAGCTTGTTAT  200

seq1  TGTAGGAATCTTGGCAGTGGGAATGGGGACTGTCCCTGAATCTTCTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGAATCTTGGCAGTGGGAATGGGGACTGTCCCTGAATCTTCTTCCT  250

seq1  ACTTTACCTACTTTTTCCTACTTTTCCCCTACTGGGTTGCCTTGATATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACCTACTTTTTCCTACTTTTCCCCTACTGGGTTGCCTTGATATTG  300

seq1  AGGCTTGAAGTAATGGTATGTGTCTGGTCTTATTCTAGTGAGATATGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGAAGTAATGGTATGTGTCTGGTCTTATTCTAGTGAGATATGCAG  350

seq1  TGTTTAGCTGATTAAGAAACAACTGGGTGTATATGTTGCCCTAAAATGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAGCTGATTAAGAAACAACTGGGTGTATATGTTGCCCTAAAATGTA  400

seq1  AAAAAAGCATACCTATACTTCCTTATCTGAGGGTTAAAAAATTTAGCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGCATACCTATACTTCCTTATCTGAGGGTTAAAAAATTTAGCTTG  450

seq1  TAGGTTCATATCTAGTCATTTTATTCAGTGTCTTTCAGGAATGTGAGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTCATATCTAGTCATTTTATTCAGTGTCTTTCAGGAATGTGAGGCT  500

seq1  GACTGATAGGAGGAAGGGACTAAATAACATTCATTGGGATGAGAAATGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGATAGGAGGAAGGGACTAAATAACATTCATTGGGATGAGAAATGAA  550

seq1  CACAGTCCAGTGCCTCTCTTGTCTATGCAGAGCCCATTATGGAGTGGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTCCAGTGCCTCTCTTGTCTATGCAGAGCCCATTATGGAGTGGCCA  600

seq1  TACAAACAATACATCCTTTAAATCAGAACAAAGAAAGCCTCTAAGATACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACAATACATCCTTTAAATCAGAACAAAGAAAGCCTCTAAGATACC  650

seq1  TGTATCTCACAATAAATTACCAACATTTAAATACCAAAACCATTGTTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTCACAATAAATTACCAACATTTAAATACCAAAACCATTGTTTTA  700

seq1  CTAAAGTAAAGCACAATTGTAGCAGTGCTGGGGCCATGCCCAGGTAGGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGTAAAGCACAATTGTAGCAGTGCTGGGGCCATGCCCAGGTAGGTT  750

seq1  TTTCTTTTGGTACTTTCTTGAATGTAAGCCGATGGGGCAGAGCATCAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTGGTACTTTCTTGAATGTAAGCCGATGGGGCAGAGCATCAGTG  800

seq1  GAGGCAAGATATGGTTTCACAAGATATTTAGTGTTTCTGTTTAATAATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAAGATATGGTTTCACAAGATATTTAGTGTTTCTGTTTAATAATAA  850

seq1  AACCTATCTTAGATCTAAGTCACTTTGGATCAGTAGCTAACCTCCTTGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTATCTTAGATCTAAGTCACTTTGGATCAGTAGCTAACCTCCTTGAG  900

seq1  TACCACTGAGGCCAGAAGCTGCAGTCTCTGGCATATAGCACATCATCATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTGAGGCCAGAAGCTGCAGTCTCTGGCATATAGCACATCATCATA  950

seq1  AAACATCAGGGGATTAAGTAAAGGGTAAATTGCTAGAGCCTTTTTCCTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAACATCAGGGGATTAAGTAAAGGGTAAATTGCTAGAGCCTTTTTCC-TT  999

seq1  TGTCCAGATGACTCTTACTTGTCAGGCTAGGGGAAATTTTGGAGCAATAA  1050
      |||||||||||||||||||||||| ||||||||||| |||||||||||||
seq2  TGTCCAGATGACTCTTACTTGTCA-GCTAGGGGAAA-TTTGGAGCAATAA  1047

seq1  ACTTCTATTGAATCAGGAGAAGATGGTTACCCTTAAAGAAGGTAAAAGTT  1100
      ||||||||   |||||||||||||||||||||||||   |||| ||||||
seq2  ACTTCTAT--GATCAGGAGAAGATGGTTACCCTTAA--GAGGT-AAAGTT  1092

seq1  TAACACGGGCAAGTACAGATAAACTCAGATAAACTCATGTACAAATTCAT  1150
      | |||||||| ||||||||||| ||||||| |||||||||||||| ||||
seq2  T-ACACGGGC-AGTACAGATAACCTCAGAT-AACTCATGTACAAA-TCAT  1138

seq1  GCTTTCCATTCTTACATCTTCATTCAAATCAGTTAGGCC  1189
      ||||||   ||||||||| |||||| |||||| ||||||
seq2  GCTTTC--ATCTTACATC-TCATTC-AATCAG-TAGGCC  1172

seq1: chr4_36468020_36469226
seq2: B6Ng01-087A18.g_68_1278 (reverse)

seq1  TGTCAAAAG-CTCCTTGAATGAGGG--AGAGGCTTTGTATTCATTG-TTC  46
      ||||||||| ||||||||  || ||  |||||||||| |||||||| || 
seq2  TGTCAAAAGTCTCCTTGAGAGAAGGAAAGAGGCTTTGAATTCATTGTTTT  50

seq1  CTC--TTCATGCTGGGG--TCTGGT--CTGTCTTGAGCTTGCAC-AGATC  89
      |||  ||||||||||||  ||||||   | |||||||||||||| |||||
seq2  CTCCTTTCATGCTGGGGTTTCTGGTTCTTTTCTTGAGCTTGCACAAGATC  100

seq1  TTGTTTACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  139
      ||||| |||| |||   | |||     ||||||   |||||  | |||  
seq2  TTGTTAACTGAGTGGAAGAGTG-----GTGTGTAGATGTGT-AGAGTG-A  143

seq1  TGTGTGTGTGTGTTTCAT-CCATGGATCCAAAGAGCTCCTTGACAGGTGG  188
      ||||||| ||| |||||| ||||||||||||| |||||||||||||||||
seq2  TGTGTGT-TGT-TTTCATCCCATGGATCCAAAAAGCTCCTTGACAGGTGG  191

seq1  CTGGAAGCA-TAGGACCTACCAGGGATA-TAAAGCAGAGAGTATACATGA  236
      ||||||||| |||||||||||||||||| |||||||||||||||||||||
seq2  CTGGAAGCATTAGGACCTACCAGGGATATTAAAGCAGAGAGTATACATGA  241

seq1  GCCAGCACACGGCTCCCACAGCATATGTAGCAGAGGACTGTATCATCTGA  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCACACGGCTCCCACAGCATATGTAGCAGAGGACTGTATCATCTGA  291

seq1  CATCAGTGGGAGGGGAGGCTTTTGGTCCTGTGGAGGCTTGATGCCCCAAA  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTGGGAGGGGAGGCTTTTGGTCCTGTGGAGGCTTGATGCCCCAAA  341

seq1  GAACAGGGATGCTAGAGGGGTGATGCAGGAGTGAGTGGGTAGGTGGAGGA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGGGATGCTAGAGGGGTGATGCAGGAGTGAGTGGGTAGGTGGAGGA  391

seq1  GCACCCTCTTAGAGGCAAAGGGAAGGGGGATAGGGTGGGGAGTTCTCAGA  436
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GCACCCTCTTAGAGGC-AAGGGAAGGGGGATAGGGTGGGGAGTTCTCAGA  440

seq1  GAGGAGACCAGGAAAGGGGATAACATTTGAAATGTAAACAAATAAATTTT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGACCAGGAAAGGGGATAACATTTGAAATGTAAACAAATAAATTTT  490

seq1  AAAAATGCGAAAACAAACAAACAAACGAAAAAATCTCATTACTACATTTT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGCGAAAACAAACAAACAAACGAAAAAATCTCATTACTACATTTT  540

seq1  CCCCAAACATTTCCACCAATTAGGATAAAATGTTCAAACATATTTGTCTA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAACATTTCCACCAATTAGGATAAAATGTTCAAACATATTTGTCTA  590

seq1  TGGGGGACCTTCTCAGTTACACCACCACAACGATTACATAGGAAAATTCT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGACCTTCTCAGTTACACCACCACAACGATTACATAGGAAAATTCT  640

seq1  CTGAAAATCATAAATTACAATATTTTCTTAGTGTAAATTATAGTTAGTAA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAATCATAAATTACAATATTTTCTTAGTGTAAATTATAGTTAGTAA  690

seq1  GCTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATATGTACACAT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATATGTACACAT  740

seq1  GCATGTGAATTCAAAATAAGAACATACCTGAGGATTTAAAAGTTATATTT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGAATTCAAAATAAGAACATACCTGAGGATTTAAAAGTTATATTT  790

seq1  TCCATTTCATCTTATTTTTTTAAAGAAAAATTAATAGATTTTTAAAGGAA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTCATCTTATTTTTTTAAAGAAAAATTAATAGATTTTTAAAGGAA  840

seq1  GACACTGTTAGTCAGAACATATAAAACAATCTCCATTATAAATTTTACCT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGTTAGTCAGAACATATAAAACAATCTCCATTATAAATTTTACCT  890

seq1  TTCAATCATTAATATGTATCTTTATTCTCAGAAGTAGCCTAATTTCACTT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATCATTAATATGTATCTTTATTCTCAGAAGTAGCCTAATTTCACTT  940

seq1  ACTCTTCCTCTATAGAAAGAACTGTCCTTCAAACATTACATCTTACTAAT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCCTCTATAGAAAGAACTGTCCTTCAAACATTACATCTTACTAAT  990

seq1  CATATAGTGCTAAACTATATGATATTGATTTAGGTATAGACAGGATTACC  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAGTGCTAAACTATATGATATTGATTTAGGTATAGACAGGATTACC  1040

seq1  TGGTTTGAAGTGTTCTACATAGTCTCGTGTTCTAAGACATTTTTTATCAA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGAAGTGTTCTACATAGTCTCGTGTTCTAAGACATTTTTTATCAA  1090

seq1  CCTGATTTGATGCCAAGCTTCACAAAAGGTCTAATCTCCTATTGTTTATA  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATTTGATGCCAAGCTTCACAAAAGGTCTAATCTCCTATTGTTTATA  1140

seq1  GTTCATGAGGAAACACTATCTCAGACTGTTTAGTTTTTTAATCTACATTG  1186
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATGAGGAAACACTATCTCAGACTGTTTAGTTTTTTAATCTACATTG  1190

seq1  AAGATAATTCTCACTGAATTC  1207
      |||||||||||||||||||||
seq2  AAGATAATTCTCACTGAATTC  1211