BAC Information

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BAC

Clone NameB6Ng01-087G05
Chromosome4 (Build37)
Map Location 4,630,013 - 4,746,540
singlet/doubletdoublet
Overlap geneImpad1
Upstream geneLyn, LOC621858, Rps20, Mos, Plag1, Chchd7, LOC666586, Rdhe2, 4833413O15Rik, Penk1, A830012C17Rik, LOC100039297, LOC622019
Downstream geneLOC100039338, 1700012H17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087G05.bB6Ng01-087G05.g
ACCDH900526DH900527
length1,063922
definitionDH900526|Mus musculus domesticus DNA, BAC clone: B6Ng01-087G05, 5' end.DH900527|Mus musculus domesticus DNA, BAC clone: B6Ng01-087G05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,745,465 - 4,746,540)(4,630,013 - 4,630,576)
sequence
gaattcactcagacaaccgaatccttctatagcaaagcttttattgcttc
aacataaggaagaccccgaacccgaaaatgacgtttcagcacctgatgtg
gcgtgacagcacctgattagatgcttgcccatcaccccattactacaccc
cgagatgggcagtgactgggcgtgaatttactcttgcacttgggcataag
gcttgtttactagttaggcacagtggaagccagcgccaccttataatggc
gattgctcacggcacagctctccacaagtgttgttgccagggcctcagtg
atttggatctcttctagcctgtgcatctcatgcagtgtaaggttggcctt
ggtgcaatgtgcatggcttataatttgatacatattttgactataaaaat
ggctgttcttttgtttcactgagttgtataatgtcaggagtttctgttgt
ttcttgaaaggcacattttatactcaagtaaaattccctttcatccatgg
gtgttttccagtctcctgccttcactgtatttgaattctctagggatcta
gcgatacctttctctttctatcatccactcctctgtcaagtgtcacagtt
ctagaaaataagacctgtaggatgtcctccaaggtacattgtctttcttg
gaactgtttgtatcaaatgaacatcgcaaatgttttctttgaacagggct
ataaccttgtttttggaagagctgtggggagttgcaggtagcaacttctc
ttctgcccaagggtgaaactcctaacattggcaaaatacaaattatactt
tgatgtttctaatagttcatctatttttcttcacgatgatgtggttatta
gttgtggtggtttgaatatgcttgacccagggagtggaactattaggagg
tgtgggccttgtgggcatgggctttaagacaccgtcctagcttctggaag
ccagtcttctctagcagcttcagataagatgtagactcagctccttatca
ctatacttgctgacactgtcatgctctgccttgatgataatgactgactc
tgacctgtaccca

gaattcttctatttgtggtggcaaattgaaattgtttgttttctgctttt
gtgtacctaataatttggatatatatatatatatatatatatatatatat
atatatatatccttccacagtaaacctaaccagctgtgaagccacaacaa
tgacagcctggtaagctgtccctaacagtgcaatagtggcactcatatat
ggatattaaccagcagccatctaattaaactttaggccttctaatcagga
gggaaaacatgtccggtactggaaagttggtcagctatccaagactaatg
aagttttgaaccctagaggagaacctactactaccactttgctaatccaa
cagacttccagactgcattctaaattcttacccttctgctacagagaagt
gcagttctcactgctcatcaaagaaacttctctttgcaacagatggagac
ccctacacaactggtcaaactacagagaacaactggcaatgaggagtcca
gtcccaatggatacacctgtaacacaatatctgcaactaaatctcagaga
acaatgtgcaatatggggcagaaagactgtaagagcaagaagaccagata
ttctcctgtgaactggatcacctggaaataacagggaaccatcaccccca
aaacaggactgcctaaacaagatgggaacaaagctgaccctaatagacat
gctaatgtgaaaaagggaactctcagatggctccaccactagacaaagac
tctccagtagtttagaaatactggaggccagtggcctgccctgaaatcat
agtcatacaagaaatgccaatctgacgaagcagattatatttatatctat
tttaaactgtatgcatttttaaaaagccatgaatttgaaagagaatgaag
gggaaagcatggaagtgggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_4745465_4746540
seq2: B6Ng01-087G05.b_46_1108 (reverse)

seq1  TGGGTTACAGGTTCAGAGGTTCAGTTCATTATCATCAAGGCAGAAGCATG  50
      |||| |||||| ||||||  |||| |||||||||||||||||| ||||||
seq2  TGGG-TACAGG-TCAGAG--TCAG-TCATTATCATCAAGGCAG-AGCATG  44

seq1  ACAGTGTCCAGGCAGGTATAGTGTATAAGGAGCTGAGTCTTACATCTTTA  100
      ||||||||   ||| |||||||| ||||||||||||||| |||||| |||
seq2  ACAGTGTC--AGCAAGTATAGTG-ATAAGGAGCTGAGTC-TACATC-TTA  89

seq1  TCTGAAGGCTGCTAGGAGAAGACTGGCTTCCAGAAAGCTAGGACGGTGTC  150
      |||||| ||||||| |||||||||||||||||| ||||||||||||||||
seq2  TCTGAA-GCTGCTA-GAGAAGACTGGCTTCCAG-AAGCTAGGACGGTGTC  136

seq1  TTAAAGCCCATGCCCACAAGG-CCACACCTCCTAATAGTTCCACTCCCTG  199
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTAAAGCCCATGCCCACAAGGCCCACACCTCCTAATAGTTCCACTCCCTG  186

seq1  GGTCAAGCATATTCAAACCACCACAACTAATAACCACATCATCGTGAAGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAGCATATTCAAACCACCACAACTAATAACCACATCATCGTGAAGA  236

seq1  AAAATAGATGAACTATTAGAAACATCAAAGTATAATTTGTATTTTGCCAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGATGAACTATTAGAAACATCAAAGTATAATTTGTATTTTGCCAA  286

seq1  TGTTAGGAGTTTCACCCTTGGGCAGAAGAGAAGTTGCTACCTGCAACTCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGGAGTTTCACCCTTGGGCAGAAGAGAAGTTGCTACCTGCAACTCC  336

seq1  CCACAGCTCTTCCAAAAACAAGGTTATAGCCCTGTTCAAAGAAAACATTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCTCTTCCAAAAACAAGGTTATAGCCCTGTTCAAAGAAAACATTT  386

seq1  GCGATGTTCATTTGATACAAACAGTTCCAAGAAAGACAATGTACCTTGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATGTTCATTTGATACAAACAGTTCCAAGAAAGACAATGTACCTTGGA  436

seq1  GGACATCCTACAGGTCTTATTTTCTAGAACTGTGACACTTGACAGAGGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATCCTACAGGTCTTATTTTCTAGAACTGTGACACTTGACAGAGGAG  486

seq1  TGGATGATAGAAAGAGAAAGGTATCGCTAGATCCCTAGAGAATTCAAATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGATAGAAAGAGAAAGGTATCGCTAGATCCCTAGAGAATTCAAATA  536

seq1  CAGTGAAGGCAGGAGACTGGAAAACACCCATGGATGAAAGGGAATTTTAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAAGGCAGGAGACTGGAAAACACCCATGGATGAAAGGGAATTTTAC  586

seq1  TTGAGTATAAAATGTGCCTTTCAAGAAACAACAGAAACTCCTGACATTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTATAAAATGTGCCTTTCAAGAAACAACAGAAACTCCTGACATTAT  636

seq1  ACAACTCAGTGAAACAAAAGAACAGCCATTTTTATAGTCAAAATATGTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTCAGTGAAACAAAAGAACAGCCATTTTTATAGTCAAAATATGTAT  686

seq1  CAAATTATAAGCCATGCACATTGCACCAAGGCCAACCTTACACTGCATGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTATAAGCCATGCACATTGCACCAAGGCCAACCTTACACTGCATGA  736

seq1  GATGCACAGGCTAGAAGAGATCCAAATCACTGAGGCCCTGGCAACAACAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCACAGGCTAGAAGAGATCCAAATCACTGAGGCCCTGGCAACAACAC  786

seq1  TTGTGGAGAGCTGTGCCGTGAGCAATCGCCATTATAAGGTGGCGCTGGCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGAGAGCTGTGCCGTGAGCAATCGCCATTATAAGGTGGCGCTGGCT  836

seq1  TCCACTGTGCCTAACTAGTAAACAAGCCTTATGCCCAAGTGCAAGAGTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGTGCCTAACTAGTAAACAAGCCTTATGCCCAAGTGCAAGAGTAA  886

seq1  ATTCACGCCCAGTCACTGCCCATCTCGGGGTGTAGTAATGGGGTGATGGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACGCCCAGTCACTGCCCATCTCGGGGTGTAGTAATGGGGTGATGGG  936

seq1  CAAGCATCTAATCAGGTGCTGTCACGCCACATCAGGTGCTGAAACGTCAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATCTAATCAGGTGCTGTCACGCCACATCAGGTGCTGAAACGTCAT  986

seq1  TTTCGGGTTCGGGGTCTTCCTTATGTTGAAGCAATAAAAGCTTTGCTATA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGGGTTCGGGGTCTTCCTTATGTTGAAGCAATAAAAGCTTTGCTATA  1036

seq1  GAAGGATTCGGTTGTCTGAGTGAATTC  1076
      |||||||||||||||||||||||||||
seq2  GAAGGATTCGGTTGTCTGAGTGAATTC  1063


seq1: chr4_4630013_4630576
seq2: B6Ng01-087G05.g_68_631

seq1  GAATTCTTCTATTTGTGGTGGCAAATTGAAATTGTTTGTTTTCTGCTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTATTTGTGGTGGCAAATTGAAATTGTTTGTTTTCTGCTTTT  50

seq1  GTGTACCTAATAATTTGGATATATATATATATATATATATATATATATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACCTAATAATTTGGATATATATATATATATATATATATATATATAT  100

seq1  ATATATATATCCTTCCACAGTAAACCTAACCAGCTGTGAAGCCACAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATCCTTCCACAGTAAACCTAACCAGCTGTGAAGCCACAACAA  150

seq1  TGACAGCCTGGTAAGCTGTCCCTAACAGTGCAATAGTGGCACTCATATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCCTGGTAAGCTGTCCCTAACAGTGCAATAGTGGCACTCATATAT  200

seq1  GGATATTAACCAGCAGCCATCTAATTAAACTTTAGGCCTTCTAATCAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTAACCAGCAGCCATCTAATTAAACTTTAGGCCTTCTAATCAGGA  250

seq1  GGGAAAACATGTCCGGTACTGGAAAGTTGGTCAGCTATCCAAGACTAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAACATGTCCGGTACTGGAAAGTTGGTCAGCTATCCAAGACTAATG  300

seq1  AAGTTTTGAACCCTAGAGGAGAACCTACTACTACCACTTTGCTAATCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTGAACCCTAGAGGAGAACCTACTACTACCACTTTGCTAATCCAA  350

seq1  CAGACTTCCAGACTGCATTCTAAATTCTTACCCTTCTGCTACAGAGAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTCCAGACTGCATTCTAAATTCTTACCCTTCTGCTACAGAGAAGT  400

seq1  GCAGTTCTCACTGCTCATCAAAGAAACTTCTCTTTGCAACAGATGGAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTCTCACTGCTCATCAAAGAAACTTCTCTTTGCAACAGATGGAGAC  450

seq1  CCCTACACAACTGGTCAAACTACAGAGAACAACTGGCAATGAGGAGTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACACAACTGGTCAAACTACAGAGAACAACTGGCAATGAGGAGTCCA  500

seq1  GTCCCAATGGATACACCTGTAACACAATATCTGCAACTAAATCTCAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAATGGATACACCTGTAACACAATATCTGCAACTAAATCTCAGAGA  550

seq1  ACAATGTGCAATAT  564
      ||||||||||||||
seq2  ACAATGTGCAATAT  564


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