BAC Information

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BAC

Clone NameB6Ng01-087I11
Chromosome4 (Build37)
Map Location 30,700,648 - 30,806,061
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC665185, LOC619906
Downstream geneLOC100040864, LOC100040891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087I11.bB6Ng01-087I11.g
ACCDH900630DH900631
length1,1731,143
definitionDH900630|Mus musculus domesticus DNA, BAC clone: B6Ng01-087I11, 5' end.DH900631|Mus musculus domesticus DNA, BAC clone: B6Ng01-087I11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,804,867 - 30,806,061)(30,700,648 - 30,701,808)
sequence
gaattctctagcaccaactgaccttcaactgactgtagtcatagccaaaa
tcttaatggaaatctcaccaaagaccctgagccactattataaaactaag
ctaaatctgccaggctcctagaaacctggccatacaaaacatgctcattg
ctattttacctcactaaacttttaagtaatttgttatataatatcaataa
tgattatgcaagtgaatcaaagagatgtaaaattacacaggtaattgtcc
cttttagattgtatcataaattttgtacagagtgtctagattaacagcaa
ttctcttaccaggtagaaaaaaaatttatgattttataaatctgatacaa
tttttaaaaaaaagacattgtgtcacaattgtttgcaattctatataggt
caaaatgactatatgttatgaactctaacacaaaattatccactgatggc
ccactctcttagaatttatttactcactaaaaatgatagtttatggaatg
aggtgtattttggtgacttttataaaatggtgaaattaattttattttta
tcatttagcttttcatgtgtacttaataattgtacaatgtaagaatctca
ctatggcattttcatgtgtgtccatagtctccttttttatattcacacta
ttgacttctcttgctcctgacttttcttcatctccctcctgtttataaag
aatcagagaaaataattttcacttaagatgtcaaacaaataatatttgta
cccaacaaagcatcaaaaaaccaatgagtctaggatgtttaataagttaa
agaactttgacctacctatcatttagctttgtagacaaattcgtacaaaa
gaaaaaatttaatgattgtttatttgagaaatgcattagatttaaaggac
tgaaaaaaatctttgaagtttcatgaatattctgtttctgatgaaaataa
ttttcagatgctcagaaaattaatgctacaaattaaaatgccaagatact
acatgggctactaaatttgtgctttagatctaagcctgtcctatgtcagt
gaccaatggctagcatcaggatacatgaaatttcagtcatggatcatcat
gctgtatcagaattttcaaattacagcccaacatttaatactataaacaa
aatgttttatcactgaatctcta
gaattctggggaatcttcaaagtgtgtatacactagagccctgagagttg
gttgctcatggtttgttggttgttcattagatgctcttggtttcaatttg
ttaaatagtcgggtacaaaaatgaaacaagaagaagacattaggtaccct
gcggcaaagatcaaatgtcccccaaggaagtcactgctccaatcatcggg
aatagtctagtgatcatgatgccccttcctcctctactcttgttaaatcg
cctatctagtgtcatagggttgaaaagtctgaaggaaaaagaactgacaa
agtagtcaagtgttcagctacagcaggctaactggattgctgtgggtttt
tgttgttgttgttgttgttgttgttgtttttattacgtattttcctcaat
tacatttccaatgctatcccaataatagataatgattactatatcctatc
cacaagactgcacaaaatgttagcccgacaacatcacctcaaattttgtt
gaaattactcacacctatgtatggtgatgtaaaggcgttgtgttatttcc
agaactaaaatagatgcatctggagcttcagataaagacataaaagtatc
aggaactgcctctcatcttgaaatccaaaagcaatgaccttcagagaagt
cctaggaaggaaaactgtccctgtgcaaaagcctcttcccggtgaagtta
cactgttttattcagatatatctggatttatcttttaaataaaagggaaa
gttatctacacccatgggttttcttttaaacatagacaaagctctcctac
acccttttggaagctgtgataattttcatggctctctagatcatttcaaa
aagaataaaatataatgaagggctgctcttacaaacaaattttacagaat
cctttggactgtcagtgttggaaattcttctctcaggggaagtaaattta
agtagagttgcatgtgagctcagactgtattcccctctcaattaccatca
taccgctgatcaggagtacacaaattcctgagatagctttaggatcttaa
ataaagaagggtgctattgcagaagagaaaaagtcttcatacgatggcac
attcctgagggatggacctcacggggtgattggaggagaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_30804867_30806061
seq2: B6Ng01-087I11.b_49_1221 (reverse)

seq1  TAGAGATTTCCAAGTGATAAAAACATTTTTGGTTATAGTATATAAATTGT  50
      ||||||||    |||||| |||||| ||||| ||||||||| |||| |||
seq2  TAGAGATT---CAGTGAT-AAAACA-TTTTGTTTATAGTAT-TAAA-TGT  43

seq1  TGGGGCTGTATTTTGAAAATTCTGATACAGCATGAATTGAATCCATGGAA  100
      | |||||||| ||||||||||||||||||||||||  || |||||||  |
seq2  T-GGGCTGTAATTTGAAAATTCTGATACAGCATGA--TG-ATCCATG--A  87

seq1  CTGAAATATCAATGTATCCCTTGATGCTTAAGCCATTTGGTCAACTGACA  150
      ||||||| || ||||||||  |||||||  ||||| |||||| |||||||
seq2  CTGAAATTTC-ATGTATCC--TGATGCT--AGCCA-TTGGTC-ACTGACA  130

seq1  TAGGACAGGCTTAGATCTTAAAGCACAAATTTTAGTAGCCCATGTAGTAT  200
      ||||||||||||||||| ||||||||||| ||||||||||||||||||||
seq2  TAGGACAGGCTTAGATC-TAAAGCACAAA-TTTAGTAGCCCATGTAGTAT  178

seq1  CTTGGCATTTTAATTTGTAGCATTAATTTTCTGAGCATCTGAAAATTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCATTTTAATTTGTAGCATTAATTTTCTGAGCATCTGAAAATTATT  228

seq1  TTCATCAGAAACAGAATATTCATGAAACTTCAAAGATTTTTTTCAGTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCAGAAACAGAATATTCATGAAACTTCAAAGATTTTTTTCAGTCCT  278

seq1  TTAAATCTAATGCATTTCTCAAATAAACAATCATTAAATTTTTTCTTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCTAATGCATTTCTCAAATAAACAATCATTAAATTTTTTCTTTTG  328

seq1  TACGAATTTGTCTACAAAGCTAAATGATAGGTAGGTCAAAGTTCTTTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGAATTTGTCTACAAAGCTAAATGATAGGTAGGTCAAAGTTCTTTAAC  378

seq1  TTATTAAACATCCTAGACTCATTGGTTTTTTGATGCTTTGTTGGGTACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAACATCCTAGACTCATTGGTTTTTTGATGCTTTGTTGGGTACAA  428

seq1  ATATTATTTGTTTGACATCTTAAGTGAAAATTATTTTCTCTGATTCTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATTTGTTTGACATCTTAAGTGAAAATTATTTTCTCTGATTCTTTA  478

seq1  TAAACAGGAGGGAGATGAAGAAAAGTCAGGAGCAAGAGAAGTCAATAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGGAGGGAGATGAAGAAAAGTCAGGAGCAAGAGAAGTCAATAGTG  528

seq1  TGAATATAAAAAAGGAGACTATGGACACACATGAAAATGCCATAGTGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATAAAAAAGGAGACTATGGACACACATGAAAATGCCATAGTGAGA  578

seq1  TTCTTACATTGTACAATTATTAAGTACACATGAAAAGCTAAATGATAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACATTGTACAATTATTAAGTACACATGAAAAGCTAAATGATAAAA  628

seq1  ATAAAATTAATTTCACCATTTTATAAAAGTCACCAAAATACACCTCATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTAATTTCACCATTTTATAAAAGTCACCAAAATACACCTCATTC  678

seq1  CATAAACTATCATTTTTAGTGAGTAAATAAATTCTAAGAGAGTGGGCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACTATCATTTTTAGTGAGTAAATAAATTCTAAGAGAGTGGGCCAT  728

seq1  CAGTGGATAATTTTGTGTTAGAGTTCATAACATATAGTCATTTTGACCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGATAATTTTGTGTTAGAGTTCATAACATATAGTCATTTTGACCTA  778

seq1  TATAGAATTGCAAACAATTGTGACACAATGTCTTTTTTTTAAAAATTGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAATTGCAAACAATTGTGACACAATGTCTTTTTTTTAAAAATTGTA  828

seq1  TCAGATTTATAAAATCATAAATTTTTTTTCTACCTGGTAAGAGAATTGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTTATAAAATCATAAATTTTTTTTCTACCTGGTAAGAGAATTGCT  878

seq1  GTTAATCTAGACACTCTGTACAAAATTTATGATACAATCTAAAAGGGACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATCTAGACACTCTGTACAAAATTTATGATACAATCTAAAAGGGACA  928

seq1  ATTACCTGTGTAATTTTACATCTCTTTGATTCACTTGCATAATCATTATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCTGTGTAATTTTACATCTCTTTGATTCACTTGCATAATCATTATT  978

seq1  GATATTATATAACAAATTACTTAAAAGTTTAGTGAGGTAAAATAGCAATG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTATATAACAAATTACTTAAAAGTTTAGTGAGGTAAAATAGCAATG  1028

seq1  AGCATGTTTTGTATGGCCAGGTTTCTAGGAGCCTGGCAGATTTAGCTTAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTTTTGTATGGCCAGGTTTCTAGGAGCCTGGCAGATTTAGCTTAG  1078

seq1  TTTTATAATAGTGGCTCAGGGTCTTTGGTGAGATTTCCATTAAGATTTTG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAATAGTGGCTCAGGGTCTTTGGTGAGATTTCCATTAAGATTTTG  1128

seq1  GCTATGACTACAGTCAGTTGAAGGTCAGTTGGTGCTAGAGAATTC  1195
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGACTACAGTCAGTTGAAGGTCAGTTGGTGCTAGAGAATTC  1173

seq1: chr4_30700648_30701808
seq2: B6Ng01-087I11.g_68_1210

seq1  GAATTCTGGGGAATCTTCAAAGTGTGTATACACTAGAGCCCTGAGAGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGGAATCTTCAAAGTGTGTATACACTAGAGCCCTGAGAGTTG  50

seq1  GTTGCTCATGGTTTGTTGGTTGTTCATTAGATGCTCTTGGTTTCAATTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTCATGGTTTGTTGGTTGTTCATTAGATGCTCTTGGTTTCAATTTG  100

seq1  TTAAATAGTCGGGTACAAAAATGAAACAAGAAGAAGACATTAGGTACCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAGTCGGGTACAAAAATGAAACAAGAAGAAGACATTAGGTACCCT  150

seq1  GCGGCAAAGATCAAATGTCCCCCAAGGAAGTCACTGCTCCAATCATCGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCAAAGATCAAATGTCCCCCAAGGAAGTCACTGCTCCAATCATCGGG  200

seq1  AATAGTCTAGTGATCATGATGCCCCTTCCTCCTCTACTCTTGTTAAATCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTCTAGTGATCATGATGCCCCTTCCTCCTCTACTCTTGTTAAATCG  250

seq1  CCTATCTAGTGTCATAGGGTTGAAAAGTCTGAAGGAAAAAGAACTGACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTAGTGTCATAGGGTTGAAAAGTCTGAAGGAAAAAGAACTGACAA  300

seq1  AGTAGTCAAGTGTTCAGCTACAGCAGGCTAACTGGATTGCTGTGGGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTCAAGTGTTCAGCTACAGCAGGCTAACTGGATTGCTGTGGGTTTT  350

seq1  TGTTGTTGTTGTTGTTGTTGTTGTTGTTTTTATTACGTATTTTCCTCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTGTTGTTGTTGTTGTTGTTGTTTTTATTACGTATTTTCCTCAAT  400

seq1  TACATTTCCAATGCTATCCCAATAATAGATAATGATTACTATATCCTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTCCAATGCTATCCCAATAATAGATAATGATTACTATATCCTATC  450

seq1  CACAAGACTGCACAAAATGTTAGCCCGACAACATCACCTCAAATTTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGACTGCACAAAATGTTAGCCCGACAACATCACCTCAAATTTTGTT  500

seq1  GAAATTACTCACACCTATGTATGGTGATGTAAAGGCGTTGTGTTATTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTACTCACACCTATGTATGGTGATGTAAAGGCGTTGTGTTATTTCC  550

seq1  AGAACTAAAATAGATGCATCTGGAGCTTCAGATAAAGACATAAAAGTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTAAAATAGATGCATCTGGAGCTTCAGATAAAGACATAAAAGTATC  600

seq1  AGGAACTGCCTCTCATCTTGAAATCCAAAAGCAATGACCTTCAGAGAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTGCCTCTCATCTTGAAATCCAAAAGCAATGACCTTCAGAGAAGT  650

seq1  CCTAGGAAGGAAAACTGTCCCTGTGCAAAAGCCTCTTCCCGGTGAAGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGAAGGAAAACTGTCCCTGTGCAAAAGCCTCTTCCCGGTGAAGTTA  700

seq1  CACTGTTTTATTCAGATATATCTGGATTTATCTTTTAAATAAAAGGGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTTTATTCAGATATATCTGGATTTATCTTTTAAATAAAAGGGAAA  750

seq1  GTTATCTACACCCATGGGTTTTCTTTTAAACATAGACAAAGCTCTCCTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCTACACCCATGGGTTTTCTTTTAAACATAGACAAAGCTCTCCTAC  800

seq1  ACCC-TTTGGAAGCTGTGATAATTTTCATGGCTCTCTAGATCATTTCAAA  849
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTTGGAAGCTGTGATAATTTTCATGGCTCTCTAGATCATTTCAAA  850

seq1  AAGAATAAAATATAATGAAGGGCTGCTCTTACAAACAAATTTTACAGAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAAAATATAATGAAGGGCTGCTCTTACAAACAAATTTTACAGAAT  900

seq1  CCTTTGGACTGTCAGTGTTGGAAATTCTTCTCTCAGGGGAAGTAAATTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGACTGTCAGTGTTGGAAATTCTTCTCTCAGGGGAAGTAAATTTA  950

seq1  AGTAGAGTTGCATGTGAGCTCAGACTGTATTCCCCTCTCAATTACCATCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGTAGAGTTGCATGTGAGCTCAGACTGTATTCCCCTCTCAATTACCATC-  999

seq1  ATACCGCTGAATCAGGAAGTACACCAAAATTCCTGAGATAGCTTTTTAAG  1049
      ||||||||| |||||| |||||||  |||||||||||||||||||   ||
seq2  ATACCGCTG-ATCAGG-AGTACAC--AAATTCCTGAGATAGCTTT---AG  1042

seq1  AATCTAAAATAAAAGAAGAGTGCTATTGCAGAAGAGAAAAAAAGTCTTCA  1099
       |||| |||| ||||||| |||||||||||||||||  ||||||||||||
seq2  GATCTTAAAT-AAAGAAGGGTGCTATTGCAGAAGAG--AAAAAGTCTTCA  1089

seq1  TACAGAATGGGCAACATCCCTGGAGGGATGGACCTCACGGTGTGAAATTA  1149
      |||   ||||   |||| ||| |||||||||||||||||| ||||     
seq2  TAC--GATGG--CACATTCCT-GAGGGATGGACCTCACGGGGTGA----T  1130

seq1  TGGAGGA-AGGAA  1161
      ||||||| |||||
seq2  TGGAGGAGAGGAA  1143