BAC Information

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BAC

Clone NameB6Ng01-087J02
Chromosome4 (Build37)
Map Location 44,564,100 - 44,727,870
singlet/doubletdoublet
Overlap genePax5, 5730488B01Rik
Upstream geneTln1, Creb3, Gba2, 1110029E03Rik, LOC100039672, LOC100040179, Npr2, Spag8, Hint2, Serf2-ps, 4930412F15Rik, Olfr70, Olfr71, LOC100039781, 5430416O09Rik, A630077J23Rik, GA_x5J8B7W5BNN-892919-892147, Olfr159, Olfr29-ps1, Olfr156, LOC100040268, Olfr155, Reck, Glipr2, Ccin, Clta, Gne, LOC100040313, OTTMUSG00000007209, Rnf38, Melk
Downstream geneLOC545618, Zcchc7, D4Wsu132e, Grhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik, Frmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32, Mcart1, Shb, LOC100040140, LOC100040557, Gm829
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087J02.bB6Ng01-087J02.g
ACCDH900656DH900657
length6131,116
definitionDH900656|Mus musculus domesticus DNA, BAC clone: B6Ng01-087J02, 5' end.DH900657|Mus musculus domesticus DNA, BAC clone: B6Ng01-087J02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,564,100 - 44,564,712)(44,726,744 - 44,727,870)
sequence
gaattcagcctgacaccattccagtgtcagcccaaagcaaatgtaccttc
ctgtggccttgacctggcctgtccctcagagcagccatgggcccgggaac
ttgcagggcccctgcgctggcgaggttggctttccccgagacccaagcat
cctaggctgactaatgagatggaggtgaaggtgccgtaccttgctgggaa
gtcacagtgctagtgccgacccgcactgcctgccatcaaattttaatgct
gcggctgacatatttatggaatgcctccccaagtgtttgcgaggagacta
gacaagatttacctctgcaattactactgcgacggtggcttcactgtggg
ctgggaactccgaagcccagagccccgccgcaccccgaggaacacactca
attttgcacacctttcctgccccccagcatgcaggggtagaagtgcgagg
tagagatgaatcagatacggttcctgcccacggagagcccacagtctgca
ggagtgggctgtacacacataaattaccttcctctgagatggctggggac
catggtgctgagacaggtactagacacaagctggggctcaggggttgggg
ggtgaggtggggg
gaattctctaagagtcgctttcaaagtgggtctctgtgcatatgtataca
gcatacacacttgacgtctgccatgtgttcctgcgcgctgcaaagcagtg
gtgaaactgaattgaactattggatttgagatgaaatgaacccatccaaa
ggatcccagtctgcactctttgaggcttctctctacaacctttttttaaa
aaattatcattaaaaaaaggaaaacaatcgcgaccacacaccattagcat
ctgtttccccggaccacacagccccatcaggtattccgcactcccggagt
atttccagacagtgagtgaatggcacatggcaccccagcgaaccagcagc
cagagctccagagctcgaagccctctcgaagcagagggcttcagcagcag
tagaaatgggtgttttgactcaaaacagctctaaaaacctgccctggcaa
gtggctaacacgatgctttttgcgccttgcgccccaaaaattaaaggcga
agagcgaccctatccatctcaagctccaaggttatcacaatgaccctact
ggtccggacccggtgtccacattccctgttgccagtctgggcctgacaca
ctgcgcagggcggggctgggctatccaggcgccgcctgctgaaggtacag
taccacgtgcgcgcctcgcgaactcggactcaagcaagtccagctccggc
cacctgatctctctgacctggggtctcgactttagggcggggcctcttcc
tcgcctcctgcctggacatctgctccgacccaaggtcctcgccagttcta
gaggaaatccctaaggcctgagttggtcggggtggctgcccccagggctt
gccccggaggccaagcggcgaccaagtatcatccaatctttcctagcatc
ccaagatctggaaaggtagaccgatcaagagatctggaaaggtagatcgc
ggggtcagaacagaatccagtctagcttccggggtggtgtttcctggcgg
agtggaggagctcaaacttggcccttctcgtcggcctccccttccttggc
atagctcctaacctaagtggagctcacagcgagctggtcagccttctgca
ggcttgctttctgtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_44564100_44564712
seq2: B6Ng01-087J02.b_50_662

seq1  GAATTCAGCCTGACACCATTCCAGTGTCAGCCCAAAGCAAATGTACCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCTGACACCATTCCAGTGTCAGCCCAAAGCAAATGTACCTTC  50

seq1  CTGTGGCCTTGACCTGGCCTGTCCCTCAGAGCAGCCATGGGCCCGGGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCCTTGACCTGGCCTGTCCCTCAGAGCAGCCATGGGCCCGGGAAC  100

seq1  TTGCAGGGCCCCTGCGCTGGCGAGGTTGGCTTTCCCCGAGACCCAAGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGGGCCCCTGCGCTGGCGAGGTTGGCTTTCCCCGAGACCCAAGCAT  150

seq1  CCTAGGCTGACTAATGAGATGGAGGTGAAGGTGCCGTACCTTGCTGGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGCTGACTAATGAGATGGAGGTGAAGGTGCCGTACCTTGCTGGGAA  200

seq1  GTCACAGTGCTAGTGCCGACCCGCACTGCCTGCCATCAAATTTTAATGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGTGCTAGTGCCGACCCGCACTGCCTGCCATCAAATTTTAATGCT  250

seq1  GCGGCTGACATATTTATGGAATGCCTCCCCAAGTGTTTGCGAGGAGACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCTGACATATTTATGGAATGCCTCCCCAAGTGTTTGCGAGGAGACTA  300

seq1  GACAAGATTTACCTCTGCAATTACTACTGCGACGGTGGCTTCACTGTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGATTTACCTCTGCAATTACTACTGCGACGGTGGCTTCACTGTGGG  350

seq1  CTGGGAACTCCGAAGCCCAGAGCCCCGCCGCACCCCGAGGAACACACTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAACTCCGAAGCCCAGAGCCCCGCCGCACCCCGAGGAACACACTCA  400

seq1  ATTTTGCACACCTTTCCTGCCCCCCAGCATGCAGGGGTAGAAGTGCGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCACACCTTTCCTGCCCCCCAGCATGCAGGGGTAGAAGTGCGAGG  450

seq1  TAGAGATGAATCAGATACGGTTCCTGCCCACGGAGAGCCCACAGTCTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATGAATCAGATACGGTTCCTGCCCACGGAGAGCCCACAGTCTGCA  500

seq1  GGAGTGGGCTGTACACACATAAATTACCTTCCTCTGAGATGGCTGGGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGGGCTGTACACACATAAATTACCTTCCTCTGAGATGGCTGGGGAC  550

seq1  CATGGTGCTGAGACAGGTACTAGACACAAGCTGGGGCTCAGGGGTTGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGCTGAGACAGGTACTAGACACAAGCTGGGGCTCAGGGGTTGGGG  600

seq1  GGTGAGGTGGGGG  613
      |||||||||||||
seq2  GGTGAGGTGGGGG  613

seq1: chr4_44726744_44727870
seq2: B6Ng01-087J02.g_72_1187 (reverse)

seq1  TGACAGGAAAAGCAAAGGGCTGCAGAAGGGTTGGCCAAGGCACGCTGTGA  50
      ||||||  |||||||  | |||||||| || || |||  || ||||||||
seq2  TGACAG--AAAGCAA--GCCTGCAGAA-GGCTGACCA--GCTCGCTGTGA  43

seq1  GCTTCCACTTA-GCTAGGAGGCTATAGCCAAGGGAGGGGGAGGCCGACGA  99
      || |||||||| | ||||| ||||| ||||| ||| ||||||||||||||
seq2  GC-TCCACTTAGGTTAGGA-GCTAT-GCCAA-GGAAGGGGAGGCCGACGA  89

seq1  GAGGGGCCAAGTTTGAGCTCCTCCACTCCGCCAGGAAACACCA-CCCGGA  148
      || |||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GAAGGGCCAAGTTTGAGCTCCTCCACTCCGCCAGGAAACACCACCCCGGA  139

seq1  AGCCTAGACTGGGATTCTGTTCTGACCCCGCGATCTACCTTTCCAGATCT  198
      || ||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AG-CTAGACT-GGATTCTGTTCTGACCCCGCGATCTACCTTTCCAGATCT  187

seq1  CTTGATCGGTCTACCTTTCCAGATCTTGGGATGCTAGGGAAGATTGGATG  248
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTTGATCGGTCTACCTTTCCAGATCTTGGGATGCTAGGAAAGATTGGATG  237

seq1  ATACTTGGTCGCCGCTTGGCCTCCGGGGCAAGCCCTGGGGGCAGCCACCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTGGTCGCCGCTTGGCCTCCGGGGCAAGCCCTGGGGGCAGCCACCC  287

seq1  CGACCAACTCAGGCCTTAGGGATTTCCTCTAGAACTGGCGAGGACCTTGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCAACTCAGGCCTTAGGGATTTCCTCTAGAACTGGCGAGGACCTTGG  337

seq1  GTCGGAGCAGATGTCCAGGCAGGAGGCGAGGAAGAGGCCCCGCCCTAAAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGAGCAGATGTCCAGGCAGGAGGCGAGGAAGAGGCCCCGCCCTAAAG  387

seq1  TCGAGACCCCAGGTCAGAGAGATCAGGTGGCCGGAGCTGGACTTGCTTGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGACCCCAGGTCAGAGAGATCAGGTGGCCGGAGCTGGACTTGCTTGA  437

seq1  GTCCGAGTTCGCGAGGCGCGCACGTGGTACTGTACCTTCAGCAGGCGGCG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGAGTTCGCGAGGCGCGCACGTGGTACTGTACCTTCAGCAGGCGGCG  487

seq1  CCTGGATAGCCCAGCCCCGCCCTGCGCAGTGTGTCAGGCCCAGACTGGCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGATAGCCCAGCCCCGCCCTGCGCAGTGTGTCAGGCCCAGACTGGCA  537

seq1  ACAGGGAATGTGGACACCGGGTCCGGACCAGTAGGGTCATTGTGATAACC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGAATGTGGACACCGGGTCCGGACCAGTAGGGTCATTGTGATAACC  587

seq1  TTGGAGCTTGAGATGGATAGGGTCGCTCTTCGCCTTTAATTTTTGGGGCG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGCTTGAGATGGATAGGGTCGCTCTTCGCCTTTAATTTTTGGGGCG  637

seq1  CAAGGCGCAAAAAGCATCGTGTTAGCCACTTGCCAGGGCAGGTTTTTAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCGCAAAAAGCATCGTGTTAGCCACTTGCCAGGGCAGGTTTTTAGA  687

seq1  GCTGTTTTGAGTCAAAACACCCATTTCTACTGCTGCTGAAGCCCTCTGCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTTGAGTCAAAACACCCATTTCTACTGCTGCTGAAGCCCTCTGCT  737

seq1  TCGAGAGGGCTTCGAGCTCTGGAGCTCTGGCTGCTGGTTCGCTGGGGTGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGAGGGCTTCGAGCTCTGGAGCTCTGGCTGCTGGTTCGCTGGGGTGC  787

seq1  CATGTGCCATTCACTCACTGTCTGGAAATACTCCGGGAGTGCGGAATACC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCCATTCACTCACTGTCTGGAAATACTCCGGGAGTGCGGAATACC  837

seq1  TGATGGGGCTGTGTGGTCCGGGGAAACAGATGCTAATGGTGTGTGGTCGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGGGCTGTGTGGTCCGGGGAAACAGATGCTAATGGTGTGTGGTCGC  887

seq1  GATTGTTTTCCTTTTTTTAATGATAATTTTTTAAAAAAAGGTTGTAGAGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTTTTCCTTTTTTTAATGATAATTTTTTAAAAAAAGGTTGTAGAGA  937

seq1  GAAGCCTCAAAGAGTGCAGACTGGGATCCTTTGGATGGGTTCATTTCATC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTCAAAGAGTGCAGACTGGGATCCTTTGGATGGGTTCATTTCATC  987

seq1  TCAAATCCAATAGTTCAATTCAGTTTCACCACTGCTTTGCAGCGCGCAGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCCAATAGTTCAATTCAGTTTCACCACTGCTTTGCAGCGCGCAGG  1037

seq1  AACACATGGCAGACGTCAAGTGTGTATGCTGTATACATATGCACAGAGAC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATGGCAGACGTCAAGTGTGTATGCTGTATACATATGCACAGAGAC  1087

seq1  CCACTTTGAAAGCGACTCTTAGAGAATTC  1127
      |||||||||||||||||||||||||||||
seq2  CCACTTTGAAAGCGACTCTTAGAGAATTC  1116