BAC Information

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BAC

Clone NameB6Ng01-087N01
Chromosome4 (Build37)
Map Location 146,553,756 - 146,728,476
singlet/doubletdoublet
Overlap geneOTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581
Upstream geneLOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570
Downstream geneEG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087N01.bB6Ng01-087N01.g
ACCDH900834DH900835
length1,1771,125
definitionDH900834|Mus musculus domesticus DNA, BAC clone: B6Ng01-087N01, 5' end.DH900835|Mus musculus domesticus DNA, BAC clone: B6Ng01-087N01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,727,274 - 146,728,476)(146,553,756 - 146,554,585)
sequence
gaattcaccccgaagcccaaccctataaaagtaatcaatccagtaaagcc
ttttcatgtcactatcacaaaaatgtcataaaagagtttatatggaagag
aaatcctacaaatacaagcaatgtgcatcaggtgcatctgtggacagcta
gaagtgtctttacagccatcttctagacccagtgaggacactgttcattt
gtaggcaacagcactgcccctgcatctgttgccgtggcacctaccagaca
tattctgaatggtgtatttacatcaaagcctgcatatatctcagtgtaaa
attaatggagagtgtaactttattcagtaaatgttaatatttatagtcat
atgatggtgctttataacctacatgttctaattcaatcaaatctgcaatg
gttcctcctatgactaatatctaaaatgctctcttgggatgcctattcag
tcccctggagaaagggaaatgaaatagcaaaaagagaaccaggggagtta
agaaagatgggagaaccgggtgtagtggcgcaagcctttaatcccagcac
tccggaggcagaggcaggcgaatttctgagtttgaggccagcctggtcta
cagagtgagttccaggacagccagggctatacagagaaaccttgtcttga
aaaaccaaaaaccaaaaaaagaaaaaaaggaaaaaaaaaaaagaaaaaaa
gaaataaaaatatgaggggaaaaatgtctcacatgctctcccaatcttat
atccatccatgtaggatgcactctccttgcagagccatggctgagataca
gcttcctaggactccatccagtcagatgagctcatgtttccttcccaccc
tcagtgtggcaaaggggtacaggtttcacactgagcacctcctggcctca
tctctttcctgttttgagtctggcccaagtaggtcttcacagggagtcca
acctgtgcagaaagcagttcagtgtctctctaacttctgggctaattgtc
gccttttatgtgtctacaagcctctcctctgtggtagctagcagtagcat
agctcctggttcaattgctcatgcatggctgaccccacagatccctgcag
gcatccactgggtggatgatgaggtgcctctatctccggtctcgagatac
ctcggaaggtatagtgcaacatcattc
gaattcatcagagaattcatacaggagagaaaccttacaaatgcagtgaa
tgtgacaaatcctttactaaaaaattcagtttgaggattcatcagagaat
tcatacaggagagaaaccttacaaatgcagtgaatgtgaaaaatgcttta
ctttcaaaggcagtctgaggattcatcagagaattcatacaggagagaaa
ccctacaaatgtagtgaatgtgacaaatcctttactgaaaatggctgttt
gagaattcatcagagaattcatacaggagagaaaccttacaaatgcactg
aatgtgacaaatgctttactttcaaaggcagtctgaggattcatcagaga
attcatacaggagagaaaccttacaaatgcactgaatgtgacaaatcctt
tactgaaaagggcaaactgagaattcatcagagaattcatacaggagaga
aaccttacaaatgtagtgaatgtgacaaatgctttactgaaaaaggccat
cagagaattcatacaggagagataccttacaaatagtttgtatgtgacaa
atacaatacaatgtcagtctgagaaatcatcagtttttaatacagtagag
aatatttataaatgaagtgaatgagacaatcctttaccaagatatatcat
cttaaaaatcattagagaatacttacagaagagaaacttttcaattatat
cgaaggtatgaatcctttactcttggcctatttcctagaatgttaacagt
gaatacttacaggatacaaacttaactcatgcattgtatgaagaaatatc
tttgacttcatttcaggtcaaagagaatatctaataactttttaggggaa
agtatttctgttggggaaagtgtggcctgtgttttattcacgttctattc
ttgacaacaattgaggctccacactagagaattagtaatgattatgaaaa
tcatgtgaaaacttttcatgcaatgtcaaatcttaaataatgtcaactat
ttttgcttgaagaaacttctgaaaatgtaaaaatgtaagaaagcttttca
tgaacacttttttactgttcacccttaaatgtacaaagatgaaagaaagt
gggaagtgaggaaaatattatgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146727274_146728476
seq2: B6Ng01-087N01.b_45_1221 (reverse)

seq1  GAATGATGTTGCCAACTTATCATTCAGAGGTGCTCTCTGAGA-CGGAGAA  49
      ||||||||||||  |||   | ||| |||||  |||| |||| |||||| 
seq2  GAATGATGTTGC--ACTATACCTTCCGAGGT-ATCTC-GAGACCGGAGA-  45

seq1  TAAGAGCAACCTCATCAATCACACAGTGGATGCCCTTGCAGGTGATCTGT  99
        ||||  |||||||||  ||| |||||||||||  |||||| |||||||
seq2  -TAGAGGCACCTCATCATCCACCCAGTGGATGCC--TGCAGG-GATCTGT  91

seq1  GGTGTCAGCCATTGCATGAGCAATTGGACCAGGAGCCTATGGCTACCTGC  149
      || |||||||| |||||||||||||| |||||||| |||| |||| ||||
seq2  GGGGTCAGCCA-TGCATGAGCAATTGAACCAGGAG-CTAT-GCTA-CTGC  137

seq1  TAGCTACCACAGAGGAAGGAGGCTGTGTAGACACAATAAAAGGCGACAAT  199
      ||||||||||||||||  |||||| ||||||||| |||||||||||||||
seq2  TAGCTACCACAGAGGA--GAGGCT-TGTAGACAC-ATAAAAGGCGACAAT  183

seq1  TAGCCCAGAGGTTAGAGAGGACACTGAACCTGCTTTCTTACACAGGTTGG  249
      ||||||||| |||||||| ||||||||| |||||||| | ||||||||||
seq2  TAGCCCAGAAGTTAGAGA-GACACTGAA-CTGCTTTC-TGCACAGGTTGG  230

seq1  ACTCCCTGTG-AGACCTACTTGGGCCAGACTCAAAACAGGAAAGAGATGA  298
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCTGTGAAGACCTACTTGGGCCAGACTCAAAACAGGAAAGAGATGA  280

seq1  GGCCAGGAGGTGCTCAGTGTGGAACCTGTACCCCTTTGCCACACTGAGGG  348
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGCCAGGAGGTGCTCAGTGTGAAACCTGTACCCCTTTGCCACACTGAGGG  330

seq1  TGGGAAGGAAACATGAGCTCATCTGACTGGATGGAGTCCTAGGAAGCTGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGGAAACATGAGCTCATCTGACTGGATGGAGTCCTAGGAAGCTGT  380

seq1  ATCTCAGCCATGGCTCTGCAAGGAGAGTGCATCCTACATGGATGGATATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGCCATGGCTCTGCAAGGAGAGTGCATCCTACATGGATGGATATA  430

seq1  AGATTGGGAGAGCATGTGAGACATTTTTCCCCTCATATTTTTATTTCTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGGGAGAGCATGTGAGACATTTTTCCCCTCATATTTTTATTTCTTT  480

seq1  TTTTCTTTTTTTTTTTTTCCTTTTTTTCTTTTTTTGGTTTTTGGTTTTTG  548
      ||||| ||||||||||||||||||||||||       |||||||||||||
seq2  TTTTC-TTTTTTTTTTTTCCTTTTTTTCTT-------TTTTTGGTTTTTG  522

seq1  GTTTTTCAAGACAAGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCAAGACAAGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCA  572

seq1  CTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCGCCTGCCTCTGCCT  648
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATTCGCCTGCCTCTGCCT  622

seq1  CCGGAGTGCTGGGATTAAAGGCTTGTGCCACTACACCCGGTTCTCCCATC  698
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCGGAGTGCTGGGATTAAAGGCTTGCGCCACTACACCCGGTTCTCCCATC  672

seq1  TTTCTTAACTCCCCTGGTTCTCTTTTTGCTATTTCATTTCCCTTTCTCCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAACTCCCCTGGTTCTCTTTTTGCTATTTCATTTCCCTTTCTCCA  722

seq1  GGGGACTGAATAGGCATCCCAAGAGAGCATTTTAGATATTAGTCATATGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGGGACTGAATAGGCATCCCAAGAGAGCATTTTAGATATTAGTCATAGGA  772

seq1  GGAACCATTGCAGATTTGATTGAATTAGAACACGTAGGTTATAAAGCACC  848
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGAACCATTGCAGATTTGATTGAATTAGAACATGTAGGTTATAAAGCACC  822

seq1  ATCATATGACTGTAAATATTAACATTTACTGAATAAAGTTACACTCTCCA  898
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATCATATGACTATAAATATTAACATTTACTGAATAAAGTTACACTCTCCA  872

seq1  TTAATTTTACACTGAGATATATGCAGGCTTTGATGTAAATACACCATTCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTACACTGAGATATATGCAGGCTTTGATGTAAATACACCATTCA  922

seq1  GAATATGTCTGGTAGGTGCCACGGCAACAGATGCAGGGGCAGTGCTGTTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGTCTGGTAGGTGCCACGGCAACAGATGCAGGGGCAGTGCTGTTG  972

seq1  CCTACAAATGAACAGTGTCCTCACTGGGTCTAGAAGATGGCTGTAAAGAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAAATGAACAGTGTCCTCACTGGGTCTAGAAGATGGCTGTAAAGAC  1022

seq1  ACTTCTAGCTGTCCACAGATGCACCTGATGCACATTGCTTGTATTTGTAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTAGCTGTCCACAGATGCACCTGATGCACATTGCTTGTATTTGTAG  1072

seq1  GATTTCTCTTCCATATAAACTCTTTTATGACATTTTTGTGATAGTGACAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTCTTCCATATAAACTCTTTTATGACATTTTTGTGATAGTGACAT  1122

seq1  GAAAAGGCTTTACTGGATTGATTACTTTTATAGGGTTGGGCTTCGGGGTG  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGCTTTACTGGATTGATTACTTTTATAGGGTTGGGCTTCGGGGTG  1172

seq1  AATTC  1203
      |||||
seq2  AATTC  1177

seq1: chr4_146553756_146554585
seq2: B6Ng01-087N01.g_361_1192

seq1  TGCACTGAATGTGACAAATGCTTTACTTTCAAAGGCAGTCTGAGGATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGAATGTGACAAATGCTTTACTTTCAAAGGCAGTCTGAGGATTCA  50

seq1  TCAGAGAATTCATACAGGAGAGAAACCTTACAAATGCACTGAATGTGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAATTCATACAGGAGAGAAACCTTACAAATGCACTGAATGTGACA  100

seq1  AATCCTTTACTGAAAAGGGCAAACTGAGAATTCATCAGAGAATTCATAAA  150
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AATCCTTTACTGAAAAGGGCAAACTGAGAATTCATCAGAGAATTCATACA  150

seq1  GGAGAGAAACCTTACAAATGTAGTGAATGTGACAAATGCTTTACTGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAAACCTTACAAATGTAGTGAATGTGACAAATGCTTTACTGAAAA  200

seq1  AGGCCATCAGAGAATTCATACAGGAGAGATAGCTTACAAATAGTTTGTAT  250
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGGCCATCAGAGAATTCATACAGGAGAGATACCTTACAAATAGTTTGTAT  250

seq1  GTGACAAATACAATACAATGTCAGTCTGAGAAATCATCAGTTTTTAATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAAATACAATACAATGTCAGTCTGAGAAATCATCAGTTTTTAATAC  300

seq1  AGTAGAGAATATTTATAAATGAAGTGAATGAGACAATCCTTTACCAAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAGAATATTTATAAATGAAGTGAATGAGACAATCCTTTACCAAGAT  350

seq1  ATATCATCTTAAAAATCATTAGAGAATACTTACAGAAGAGAAACTTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATCTTAAAAATCATTAGAGAATACTTACAGAAGAGAAACTTTTCA  400

seq1  ATTATATCGAAGGTATGAATCCTTTACTCTTGGCCTATTTCCTAGAATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATCGAAGGTATGAATCCTTTACTCTTGGCCTATTTCCTAGAATGT  450

seq1  TAACAGTGAATACTTACAGGATACAAACTTAACTCATGCATTGTATGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTGAATACTTACAGGATACAAACTTAACTCATGCATTGTATGAAG  500

seq1  AAATATCTTTGACTTCATTTCAGGTCAAAGAGAATATCTAATAACTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCTTTGACTTCATTTCAGGTCAAAGAGAATATCTAATAACTTTTT  550

seq1  A-GGCAAAGTATTTCTGTTGGGGAAAGTGTGGCCTGTGTTTTATTCACGT  599
      | || |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAAAGTATTTCTGTTGGGGAAAGTGTGGCCTGTGTTTTATTCACGT  600

seq1  TCTATTCTTGACAACAATTGAGGCTCCACACTAGAGAATTAGT-ATGATT  648
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCTATTCTTGACAACAATTGAGGCTCCACACTAGAGAATTAGTAATGATT  650

seq1  ATGAAAATCATGTGAAAAC-TTTCATGCAATGTTCAAATCTTAAATAATG  697
      ||||||||||||||||||| |||||||||||| |||||||||||||||||
seq2  ATGAAAATCATGTGAAAACTTTTCATGCAATG-TCAAATCTTAAATAATG  699

seq1  TCAACTATTTTTTGCTTGAAGAAAC-TCTGAAAATGTAAAAATGT-AGAA  745
      ||||||| ||||||||||||||||| ||||||||||||||||||| ||||
seq2  TCAACTA-TTTTTGCTTGAAGAAACTTCTGAAAATGTAAAAATGTAAGAA  748

seq1  AGCTTTTCATG-ACACCTTTTTACTTGTTCACCCTTAAATGTTACAAGAT  794
      ||||||||||| |||| ||||||| |||||||||||||||||   |||||
seq2  AGCTTTTCATGAACACTTTTTTAC-TGTTCACCCTTAAATGTACAAAGAT  797

seq1  GAAGACAAGTTGGGAAGTGAGG-AGATATTATTGTGT  830
      ||| | ||  |||||||||||| | |||||| |||||
seq2  GAA-AGAAAGTGGGAAGTGAGGAAAATATTA-TGTGT  832