BAC Information

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BAC

Clone NameB6Ng01-087O15
Chromosome4 (Build37)
Map Location 85,512,671 - 85,709,138
singlet/doubletdoublet
Overlap geneLOC668052
Upstream geneD530005L17Rik, LOC622811, LOC100040303, Sh3gl2, A930009N24
Downstream geneAdamtsl1, 4930500O09Rik, Rraga, 6230416J20Rik, LOC100040388, Adfp, EG624685, Dennd4c, Rps6, Asah3l, Slc24a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087O15.bB6Ng01-087O15.g
ACCDH900910DH900911
length1,1561,099
definitionDH900910|Mus musculus domesticus DNA, BAC clone: B6Ng01-087O15, 5' end.DH900911|Mus musculus domesticus DNA, BAC clone: B6Ng01-087O15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,512,671 - 85,513,830)(85,708,034 - 85,709,138)
sequence
gaattccttcctattgatcagaccttaggtccaattagacagttgctgat
tacacccaagataaaactgctactattgcaccattgaagatattttgtca
ggctgtcatggttgggctttgtagaatttacagatggataagactattga
ttgctttccccagttgtaagcctctccctgaggactagctctcagatgga
ctgagactagtatcagatggttttatgaacgatgccatggtagaagagta
gtgtgattatgataaattatatgactattaaaataaccatgggtggtcta
ctttcattcaacttttttctatacccttaagtatatataattaatgacaa
gctaggcttagcaaattaaattgcaaaagattctctaactgttttccagt
atcgtgatgagagtgagttctactttgaaactaggactggagtttaaata
attggaaccaagaatggcatcaccagttggtatggaaacagaggatggca
agtttcaggtaggacactaagcattggaagaaaacaggcaagactcatga
ctgggaaattagagacaagtaagaataaaaacttatattaatattcagtc
aacaatactggaagttcacacacacacacacacacacacacacacatggc
attgagaaaacataaattaaagattaagactgtcattggggaataattcc
cagttcactgcttggtaaaaggcaaataggttgtctaggaaggtcagagc
taggcaaattgtcctgagaaaattcagaggtaggtgatgcttccatacct
gtttctgtttgcctacttgctgtaaactttgtttgtttttttttttttac
ttttacgcaacttttattggttactttatttagttacatttcaaatgtca
tccccaccttcccagtttcccctccacaaacccctatctcatccccctct
cctgcttctatgagggttctcccctacccacccattcacttccactcaca
cgtagattcctctaagctggggcatcatgctttccacaggaccagagcct
ccccctccccactgatgcccagatagccatctccttctacatatgccgct
gggagtcatggtccttcatggtgaactcaatggtgatgttcgtctcttgg
agctct
gaattcaatgaaaacagtgacctaaaggaagggaatctggattgtatggt
tgaccctacttaagaggtattgctgatagatgggactcaaatttcccagt
caacactttgcattttaaattcagttatttgtcaaacaaaagtgcaatga
tggacaattgcttcacttattcacagagcaagcttacaataagtacctat
ttaaataaaattctgcctgccatcaaggaggcagattgtgtgtgtgtttg
tgtgtgtgtgtgttggatatgatgacaccaaattcttacctccaaagggg
tccccatcattagaggctacattctgtacagggtgcaagatctggcagtc
tacatgctatcaagatccttctgtaacagtaaattcaaagcaagcttgtc
atttcaggcaagctacaagccccagagcaagggctcaatgaccaatggct
agaacaactcttatgaaagagcaggaaatttcttccaagatctttttcca
aatctcactccagcccaggaacaatgggcactctgatggtttccattacc
ccttttcatttctggttctgctgacaaagttcaatatttaaacaatacat
gtaaagacttcaagtggtggctgagattatagcctacaaaatgggttggg
aaatcagatacccgaccatacctctctataagattggagtgaggtatatt
tattttattggacagtttgaaattattataggttgttgacaatttcctgt
ctcatttcttttatgctcttggaagttaggtcatgatgtcttgggttatc
acactcctttgttctaacgttataccagtaaaccaaactaatgtaaaaga
aagcctctaggggggaaatgaaggaaaaaatactctaggaggaggatggc
agagctttggaaaaaatctgaaaggcaatgaagatgagattgaaagtctg
tgaaattaatgtagtgtagaattggcgagcatgtcactcactcttttaac
caatagagagagatctccttatgaggttcacccaaatatttccaggtggc
aaactctattagaagtcccgccaatttcttgcttcagaactggaaataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_85512671_85513830
seq2: B6Ng01-087O15.b_47_1202

seq1  GAATTCCTTCCTATTGATCAGACCTTAGGTCCAATTAGACAGTTGCTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCCTATTGATCAGACCTTAGGTCCAATTAGACAGTTGCTGAT  50

seq1  TACACCCAAGATAAAACTGCTACTATTGCACCATTGAAGATATTTTGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCCAAGATAAAACTGCTACTATTGCACCATTGAAGATATTTTGTCA  100

seq1  GGCTGTCATGGTTGGGCTTTGTAGAATTTACAGATGGATAAGACTATTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCATGGTTGGGCTTTGTAGAATTTACAGATGGATAAGACTATTGA  150

seq1  TTGCTTTCCCCAGTTGTAAGCCTCTCCCTGAGGACTAGCTCTCAGATGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTCCCCAGTTGTAAGCCTCTCCCTGAGGACTAGCTCTCAGATGGA  200

seq1  CTGAGACTAGTATCAGATGGTTTTATGAACGATGCCATGGTAGAAGAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACTAGTATCAGATGGTTTTATGAACGATGCCATGGTAGAAGAGTA  250

seq1  GTGTGATTATGATAAATTATATGACTATTAAAATAACCATGGGTGGTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATTATGATAAATTATATGACTATTAAAATAACCATGGGTGGTCTA  300

seq1  CTTTCATTCAACTTTTTTCTATACCCTTAAGTATATATAATTAATGACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATTCAACTTTTTTCTATACCCTTAAGTATATATAATTAATGACAA  350

seq1  GCTAGGCTTAGCAAATTAAATTGCAAAAGATTCTCTAACTGTTTTCCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGCTTAGCAAATTAAATTGCAAAAGATTCTCTAACTGTTTTCCAGT  400

seq1  ATCGTGATGAGAGTGAGTTCTACTTTGAAACTAGGACTGGAGTTTAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTGATGAGAGTGAGTTCTACTTTGAAACTAGGACTGGAGTTTAAATA  450

seq1  ATTGGAACCAAGAATGGCATCACCAGTTGGTATGGAAACAGAGGATGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAACCAAGAATGGCATCACCAGTTGGTATGGAAACAGAGGATGGCA  500

seq1  AGTTTCAGGTAGGACACTAAGCATTGGAAGAAAACAGGCAAGACTCATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAGGTAGGACACTAAGCATTGGAAGAAAACAGGCAAGACTCATGA  550

seq1  CTGGGAAATTAGAGACAAGTAAGAATAAAAACTTATATTAATATTCAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAATTAGAGACAAGTAAGAATAAAAACTTATATTAATATTCAGTC  600

seq1  AACAATACTGGAAGTTCACACACACACACACACACACACACACACATGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATACTGGAAGTTCACACACACACACACACACACACACACACATGGC  650

seq1  ATTGAGAAAACATAAATTAAAGATTAAGACTGTCATTGGGGAATAATTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGAAAACATAAATTAAAGATTAAGACTGTCATTGGGGAATAATTCC  700

seq1  CAGTTCACTGCTTGGTAAAAGGCAAATAGGTTGTCTAGGAAGGTCAGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCACTGCTTGGTAAAAGGCAAATAGGTTGTCTAGGAAGGTCAGAGC  750

seq1  TAGGCAAATTGTCCTGAGAAAATTCAGAGGTAGGTGATGCTTCCATACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAAATTGTCCTGAGAAAATTCAGAGGTAGGTGATGCTTCCATACCT  800

seq1  GTTTCTGTTTGCCTACTTGCTGTAAACTTTGTTTG-TTTTTTTTTTTTAC  849
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTTTCTGTTTGCCTACTTGCTGTAAACTTTGTTTGTTTTTTTTTTTTTAC  850

seq1  TTTTACGCAACTTTTATTGGTTACTTTATTTAGTTACATTTCAAATGTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACGCAACTTTTATTGGTTACTTTATTTAGTTACATTTCAAATGTCA  900

seq1  TCCCCACCTTCCCAGTTTCCCCTCCACAAACCCCTATCTCATCCCCCTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACCTTCCCAGTTTCCCCTCCACAAACCCCTATCTCATCCCCCTCT  950

seq1  CCTGCTTCTATGAGGGTTCTCCCCTACCCACCCATCCACTCCCACCTCAC  999
      ||||||||||||||||||||||||||||||||||| |||| ||| |||||
seq2  CCTGCTTCTATGAGGGTTCTCCCCTACCCACCCATTCACTTCCA-CTCAC  999

seq1  CACCCTAGAATTCCTCTAAGCTGGGGCATCATGC-TTCCACAGGACCAAG  1048
         | ||| ||||||||||||||||||||||||| |||||||||||| ||
seq2  --ACGTAG-ATTCCTCTAAGCTGGGGCATCATGCTTTCCACAGGACC-AG  1045

seq1  AGCCTCCCC--TCCCACTGATG-CCAGATAAGCCATTCTCTTCTACATAT  1095
      |||||||||   |||||||||| |||||| ||||||   |||||||||||
seq2  AGCCTCCCCCTCCCCACTGATGCCCAGAT-AGCCATCTCCTTCTACATAT  1094

seq1  GCAGCT-GGAGTCATGGGTCCCTCCATGTGGACTCATTGGTTGGTTGTTT  1144
      || ||| |||||||| ||||| ||   ||| ||||| ||||  | || ||
seq2  GCCGCTGGGAGTCAT-GGTCCTTCATGGTGAACTCAATGGT--GATG-TT  1140

seq1  CGTCTCTGGGAGCTCT  1160
      ||||||| ||||||||
seq2  CGTCTCTTGGAGCTCT  1156

seq1: chr4_85708034_85709138
seq2: B6Ng01-087O15.g_70_1168 (reverse)

seq1  TTATTT-CAGTTCTGAAGCAAGAAATT-GCGGGAC-TCTAATAG-TTTTG  46
      |||||| |||||||||||||||||||| ||||||| ||||||||  ||||
seq2  TTATTTCCAGTTCTGAAGCAAGAAATTGGCGGGACTTCTAATAGAGTTTG  50

seq1  CCACCTGTGAATTATTTGGGTGCACCTCCTAAGTGGGTTCTCTCTTCTAT  96
      ||||||| ||| |||||||||| ||||| |||| | | |||||| |||||
seq2  CCACCTG-GAAATATTTGGGTGAACCTCATAAG-GAGATCTCTC-TCTAT  97

seq1  TTGTTTAAAGAAGTGAGTGACATGCTCGCCAATTCTACACTACATTAATT  146
      | ||| |||| ||||||||||||||||||||||||||||||||||||| |
seq2  TGGTTAAAAG-AGTGAGTGACATGCTCGCCAATTCTACACTACATTAA-T  145

seq1  TTCACAGACTTTCCATCTTCATCTTCATTGCCTTTTCAGATTTTTTTCCA  196
      ||||||||||||| ||| |||||||||||||| ||||||| |||||||||
seq2  TTCACAGACTTTCAATC-TCATCTTCATTGCC-TTTCAGA-TTTTTTCCA  192

seq1  AAGCTTCTGCCATCCTCCTCCTAGAGTATTTTTTCCTTCATTTTCCCCCC  246
      |||| ||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAGC-TCTGCCATCCTCCTCCTAGAGTATTTTTTCCTTCA-TTTCCCCCC  240

seq1  TAGGGGCTTTC-TTTACATTAGTTTGGTTTACTGGTATAAACGTTAGAAC  295
      ||| ||||||| |||||||||||||||||||||||||| |||||||||||
seq2  TAGAGGCTTTCTTTTACATTAGTTTGGTTTACTGGTAT-AACGTTAGAAC  289

seq1  AAAGGAGTGTGATAACCCAAGACATCCTGACCTAACTTCCAAGAGCATAA  345
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAAGGAGTGTGATAACCCAAGACATCATGACCTAACTTCCAAGAGCATAA  339

seq1  AAGAAATGAGACAGGAAATTGTCAACAACCTATAATAATTTCAAACTGTC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATGAGACAGGAAATTGTCAACAACCTATAATAATTTCAAACTGTC  389

seq1  CAATAAAATAAATATACCTCACTCCAATCTTATAGAGAGGTATGGTCGGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAATAAATATACCTCACTCCAATCTTATAGAGAGGTATGGTCGGG  439

seq1  TATCTGATTTCCCAACCCATTTTGTAGGCTATAATCTCAGCCACCACTTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGATTTCCCAACCCATTTTGTAGGCTATAATCTCAGCCACCACTTG  489

seq1  AAGTCTTTACATGTATTGTTTAAATATTGAACTTTGTCAGCAGAACCAGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTTACATGTATTGTTTAAATATTGAACTTTGTCAGCAGAACCAGA  539

seq1  AATGAAAAGGGGTAATGGAAACCATCAGAGTGCCCATTGTTCCTGGGCTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAAGGGGTAATGGAAACCATCAGAGTGCCCATTGTTCCTGGGCTG  589

seq1  GAGTGAGATTTGGAAAAAGATCTTGGAAGAAATTTCCTGCTCTTTCATAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGATTTGGAAAAAGATCTTGGAAGAAATTTCCTGCTCTTTCATAA  639

seq1  GAGTTGTTCTAGCCATTGGTCATTGAGCCCTTGCTCTGGGGCTTGTAGCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGTTCTAGCCATTGGTCATTGAGCCCTTGCTCTGGGGCTTGTAGCT  689

seq1  TGCCTGAAATGACAAGCTTGCTTTGAATTTACTGTTACAGAAGGATCTTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGAAATGACAAGCTTGCTTTGAATTTACTGTTACAGAAGGATCTTG  739

seq1  ATAGCATGTAGACTGCCAGATCTTGCACCCTGTACAGAATGTAGCCTCTA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCATGTAGACTGCCAGATCTTGCACCCTGTACAGAATGTAGCCTCTA  789

seq1  ATGATGGGGACCCCTTTGGAGGTAAGAATTTGGTGTCATCATATCCAACA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGGGACCCCTTTGGAGGTAAGAATTTGGTGTCATCATATCCAACA  839

seq1  CACACACACACAAACACACACACAATCTGCCTCCTTGATGGCAGGCAGAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACAAACACACACACAATCTGCCTCCTTGATGGCAGGCAGAA  889

seq1  TTTTATTTAAATAGGTACTTATTGTAAGCTTGCTCTGTGAATAAGTGAAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTAAATAGGTACTTATTGTAAGCTTGCTCTGTGAATAAGTGAAG  939

seq1  CAATTGTCCATCATTGCACTTTTGTTTGACAAATAACTGAATTTAAAATG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGTCCATCATTGCACTTTTGTTTGACAAATAACTGAATTTAAAATG  989

seq1  CAAAGTGTTGACTGGGAAATTTGAGTCCCATCTATCAGCAATACCTCTTA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGTTGACTGGGAAATTTGAGTCCCATCTATCAGCAATACCTCTTA  1039

seq1  AGTAGGGTCAACCATACAATCCAGATTCCCTTCCTTTAGGTCACTGTTTT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGGTCAACCATACAATCCAGATTCCCTTCCTTTAGGTCACTGTTTT  1089

seq1  CATTGAATTC  1105
      ||||||||||
seq2  CATTGAATTC  1099