BAC Information

Click to search

BAC

Clone NameB6Ng01-088E18
Chromosome4 (Build37)
Map Location 45,471,210 - 45,628,623
singlet/doubletdoublet
Overlap geneShb, LOC100040140
Upstream genePax5, 5730488B01Rik, LOC545618, Zcchc7, D4Wsu132e, Grhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik, Frmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32, Mcart1
Downstream geneLOC100040557, Gm829, LOC100040567, LOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik, Tdrd7, Tmod1, BC057893, AU014645, Xpa, LOC624430, LOC666379, LOC666389, Foxe1, 5830415F09Rik, Hemgn, LOC100040643, Anp32b, Nans, Trim14, Coro2a, Tbc1d2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088E18.bB6Ng01-088E18.g
ACCDH901190DH901191
length1,2151,121
definitionDH901190|Mus musculus domesticus DNA, BAC clone: B6Ng01-088E18, 5' end.DH901191|Mus musculus domesticus DNA, BAC clone: B6Ng01-088E18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,471,210 - 45,472,441)(45,627,498 - 45,628,623)
sequence
gaattctgcaggcaaacaggagggaaggagacaagttgtggatgtgcaaa
gaggacgtcttcctactcctggctgccctgcagagtgctttctcagctct
ctgactgtaacgtttaacgtcactctctcactgtcatcatatctgtcttc
agagattgggccagctgtgagcagcaagtggcaaatgtgttctggttctg
aacagccctcgtacctgacccatcttaccaaccgatgccgtctttgaatc
ccttttgcacagagccacattgggccaagtgaccctcctgttcccacctg
gctcagagattaactttaaagagccaacatacaagactctcctggagagg
tcctgccgggctactcttcaaccctgtggagctgagtgatgcttcctggt
accctgcagcccagagcccactcacccacgagagtgtaacacgccaggat
ttggagctgtgggaagaggagttggcttcttttaggaaggatggcaggag
cgacctcatcagtcatccctgacagcagacagacatttcagttgctattt
ctaggagctaacacacctacatcgacatgacagtgacttgagggtaggga
agccaggcacaggagctggggaggggcaggacagagcagagggccagcac
tggagctgactgctctggcaagtggaagcagaggggaatggcttctcctg
tggctcaccagtgtgagccaaggccccatcacatacagaataagctcaca
acttgcttgcctttcttttccagggtctcacaatgcagcccatggagcat
ccatgtgactagccttgaactcatgaactgtattaaagggtcccgactcc
tctgcctcaacctccccagggctaggattacaggcaagggtcactcactc
gtaggtaacaattgtccattctcttgtatagacaaaaccagcatccatct
ctaaaactctctcatcttctcaaactaaaactctatacttgttagacact
ggctcccactctagaagtccctaccataccggcccccccccccccttttc
cctttctccttcccctcctctcctgagaactactactctgcagcactttc
tataaggaaatccagcatttgtctgcactgctttactgccccgcggagtt
gggtttcaggtggatcacgggcgaactcagttttcagctaatatgttggc
aatgtagacattctc
gaattctgatgcagggaccagcccttggagaagaaggatcaggccacctt
tttctccccctggggtcacatcagccaaagctcaaacctacagaatcaat
cataccaaagacagggaaagccctggttcagcgcaggtaccacaaaggga
ccaaactgacttctatgactcagttttcccatctgtatactgagggtgct
aagattttctggctatcatattctgtgactttaaggtctaggcaggggct
ggcaaactagagccttaggactgaatagaacatatcaattatttttctca
ctgttgtgaccaaatgcctgaaaagggtaatggaaggaaggcagggcttg
ttttgggctcgcagtttgaagaggtacagtccatcgtggtggggctggca
gaatgtcagatgtacaaggcaactggatacattgtattgttgtcaggaag
caaaaaggcatgggtactgcggtttggctccaggtctcttgttcagccca
gaacccagtctgtgagataatacatttagggtggatttttctcatctcta
ttaaactaatccaaaaaacacccgagcagataagctgtcaggtttgtttc
catgttggttccagaccacatcaattgacagtcatgttaactattatgct
gaaccaggctctcaggtgacttcatgggcccagaagtcacaaattatttt
tatgttttaagactggtggtgagtctacttccagggaattaaaatctgaa
tgtggcaagccttcttctaataatgggtaaagccaattcacaagggagaa
tcaagtttataaaccatatccatggggaaagtctgcagtcataccagtgg
ccagaaaaaatgctaataaagatatgacatacctttttacagttattaga
atagtaaaagtctatttcaagtcctaacacctatgctcactatgacaacg
gaagggtttctccctctgcccttggttgcagtgtggttgcaaaactgaaa
gaatcttgaagttgattggcaattagtatcaaacatcatgaaaatgcaca
gacaacccactcattccacttcaagaaactgggtccaagaaataacctca
aataagaaaaaaaatgtctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_45471210_45472441
seq2: B6Ng01-088E18.b_45_1259

seq1  GAATTCTGCAGGCAAACAGGAGGGAAGGAGACAAGTTGTGGATGTGCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAGGCAAACAGGAGGGAAGGAGACAAGTTGTGGATGTGCAAA  50

seq1  GAGGACGTCTTCCTACTCCTGGCTGCCCTGCAGAGTGCTTTCTCAGCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACGTCTTCCTACTCCTGGCTGCCCTGCAGAGTGCTTTCTCAGCTCT  100

seq1  CTGACTGTAACGTTTAACGTCACTCTCTCACTGTCATCATATCTGTCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGTAACGTTTAACGTCACTCTCTCACTGTCATCATATCTGTCTTC  150

seq1  AGAGATTGGGCCAGCTGTGAGCAGCAAGTGGCAAATGTGTTCTGGTTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTGGGCCAGCTGTGAGCAGCAAGTGGCAAATGTGTTCTGGTTCTG  200

seq1  AACAGCCCTCGTACCTGACCCATCTTACCAACCGATGCCGTCTTTGAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCCTCGTACCTGACCCATCTTACCAACCGATGCCGTCTTTGAATC  250

seq1  CCTTTTGCACAGAGCCACATTGGGCCAAGTGACCCTCCTGTTCCCACCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGCACAGAGCCACATTGGGCCAAGTGACCCTCCTGTTCCCACCTG  300

seq1  GCTCAGAGATTAACTTTAAAGAGCCAACATACAAGACTCTCCTGGAGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGAGATTAACTTTAAAGAGCCAACATACAAGACTCTCCTGGAGAGG  350

seq1  TCCTGCCGGGCTACTCTTCAACCCTGTGGAGCTGAGTGATGCTTCCTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCGGGCTACTCTTCAACCCTGTGGAGCTGAGTGATGCTTCCTGGT  400

seq1  ACCCTGCAGCCCAGAGCCCACTCACCCACGAGAGTGTAACACGCCAGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGCAGCCCAGAGCCCACTCACCCACGAGAGTGTAACACGCCAGGAT  450

seq1  TTGGAGCTGTGGGAAGAGGAGTTGGCTTCTTTTAGGAAGGATGGCAGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGCTGTGGGAAGAGGAGTTGGCTTCTTTTAGGAAGGATGGCAGGAG  500

seq1  CGACCTCATCAGTCATCCCTGACAGCAGACAGACATTTCAGTTGCTATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCTCATCAGTCATCCCTGACAGCAGACAGACATTTCAGTTGCTATTT  550

seq1  CTAGGAGCTAACACACCTACATCGACATGACAGTGACTTGAGGGTAGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAGCTAACACACCTACATCGACATGACAGTGACTTGAGGGTAGGGA  600

seq1  AGCCAGGCACAGGAGCTGGGGAGGGGCAGGACAGAGCAGAGGGCCAGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGCACAGGAGCTGGGGAGGGGCAGGACAGAGCAGAGGGCCAGCAC  650

seq1  TGGAGCTGACTGCTCTGGCAAGTGGAAGCAGAGGGGAATGGCTTCTCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTGACTGCTCTGGCAAGTGGAAGCAGAGGGGAATGGCTTCTCCTG  700

seq1  TGGCTCACCAGTGTGAGCCAAGGCCCCATCACATACAGAATAAGCTCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCACCAGTGTGAGCCAAGGCCCCATCACATACAGAATAAGCTCACA  750

seq1  ACTTGCTTGCCTTTCTTTTCCAGGGTCTCACAATGCAGCCCATGGAGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTTGCCTTTCTTTTCCAGGGTCTCACAATGCAGCCCATGGAGCAT  800

seq1  CCATGTGACTAGCCTTGAACTCATGAACTGTATTAAAGGGTCCCGACTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGACTAGCCTTGAACTCATGAACTGTATTAAAGGGTCCCGACTCC  850

seq1  TCTGCCTCAACCTCCCCAGGGCTAGGATTACAGGCAAGGGTCACTCACTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCAACCTCCCCAGGGCTAGGATTACAGGCAAGGGTCACTCACTC  900

seq1  GTAGGTAACAATTGTCCATTCTCTTGTATAGACAAAACCAGCATCCATCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTAACAATTGTCCATTCTCTTGTATAGACAAAACCAGCATCCATCT  950

seq1  CTAAAACTCTCTCATCTTCTCAAACTAAAACTCTATACTTGTTAGACACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACTCTCTCATCTTCTCAAACTAAAACTCTATACTTGTTAGACACT  1000

seq1  GGCTCCCCACCTCTTAGAAAGTCCCTACCATACCGCCCCCCCCCCCCCTT  1050
      |||||||   ||| ||| ||||||||||||||||| |||||||||||| |
seq2  GGCTCCC--ACTC-TAG-AAGTCCCTACCATACCGGCCCCCCCCCCCCCT  1046

seq1  TTTCCCTTTCTCCTTCCCCT-CTCT-CTGAGACTAACTACTCTGGCCAGC  1098
      |||||||||||||||||||| |||| ||||||   |||||||||  ||||
seq2  TTTCCCTTTCTCCTTCCCCTCCTCTCCTGAGAACTACTACTCTG--CAGC  1094

seq1  ACTTTCTATAA-GTAATCCAGCATTTGTCCTGCAGCTGGCTTACTG-CAC  1146
      ||||||||||| | |||||||||||||| ||||| |||  |||||| | |
seq2  ACTTTCTATAAGGAAATCCAGCATTTGT-CTGCA-CTGCTTTACTGCCCC  1142

seq1  GCGGAGTTGTGTTTCCAAAGTGGGATCACGTGGCAGAACTTCACGTGTTT  1196
      ||||||||| |||||   ||  |||||||| ||| |||| |||   ||||
seq2  GCGGAGTTGGGTTTC---AGGTGGATCACG-GGC-GAAC-TCA---GTTT  1183

seq1  TCAGGCTGAGTAATGT-TTTGCGATGTAGACATTCTC  1232
      ||||      |||| | || || ||||||||||||||
seq2  TCAG-----CTAATATGTTGGCAATGTAGACATTCTC  1215

seq1: chr4_45627498_45628623
seq2: B6Ng01-088E18.g_68_1188 (reverse)

seq1  GCAGACACTTTTTTTCTTATATTGAGTTATTTTCTTTGGACCAGTTCTTT  50
      ||||||| |||||||||||| ||||| |  |||||| |  ||||||  ||
seq2  GCAGACATTTTTTTTCTTAT-TTGAGGTTATTTCTTGGACCCAGTTTCTT  49

seq1  GGAGTGGAATGAGTGGGTTGTCTGTGCATTTTCATGATGTTTGATACT-A  99
      | |||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GAAGTGGAATGAGTGGGTTGTCTGTGCATTTTCATGATGTTTGATACTAA  99

seq1  TTGCCAAATCAACTTCAAAGATTCTTTTCAGTTTTGCAACCACACTGCA-  148
      ||||| |||||||||| ||||||| |||||||||||||||||||||||| 
seq2  TTGCC-AATCAACTTC-AAGATTC-TTTCAGTTTTGCAACCACACTGCAA  146

seq1  -CCAGGGCAGAGGGAGAGACCCTTCCGTTGTCATAGTGAGCATAGGTGTT  197
       | |||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCAAGGGCAGAGGGAGAAACCCTTCCGTTGTCATAGTGAGCATAGGTGTT  196

seq1  AGGACTTGAAATAGACTTTTTACTATTCTAATAACTGTAAAAAGGTATGT  247
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGGACTTGAAATAGAC-TTTTACTATTCTAATAACTGTAAAAAGGTATGT  245

seq1  CATAATCTTTATTAGCATTTTTTTCTGGCCACTGGTATGACTGCAGACTT  297
      ||| ||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CAT-ATCTTTATTAGCA-TTTTTTCTGGCCACTGGTATGACTGCAGACTT  293

seq1  T-CCCATGGATATGGTTTATAAACTTGATTCTCCCTTGTGAATTGGCTTT  346
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATGGATATGGTTTATAAACTTGATTCTCCCTTGTGAATTGGCTTT  343

seq1  ACCCATTTATTAGAAGAAGGCTTGCCACATTCAGATTTTAATTCCCTGGA  396
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCA-TTATTAGAAGAAGGCTTGCCACATTCAGATTTTAATTCCCTGGA  392

seq1  AGTAGACTCACCACCAGTCTTTAAAACATAAAAATAATTTGTGACTTCTG  446
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGTAGACTCACCACCAGTC-TTAAAACATAAAAATAATTTGTGACTTCTG  441

seq1  GGCCCATGAAGTCACCTGAGAGCCTGGTTCAGCATAATAGTTAACATGAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCATGAAGTCACCTGAGAGCCTGGTTCAGCATAATAGTTAACATGAC  491

seq1  TGTCAATTGATGTGGTCTGGAACCAACATGGAAACAAACCTGACAGCTTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAATTGATGTGGTCTGGAACCAACATGGAAACAAACCTGACAGCTTA  541

seq1  TCTGCTCGGGTGTTTTTTGGATTAGTTTAATAGAGATGAGAAAAATCCAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCGGGTGTTTTTTGGATTAGTTTAATAGAGATGAGAAAAATCCAC  591

seq1  CCTAAATGTATTATCTCACAGACTGGGTTCTGGGCTGAACAAGAGACCTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAATGTATTATCTCACAGACTGGGTTCTGGGCTGAACAAGAGACCTG  641

seq1  GAGCCAAACCGCAGTACCCATGCCTTTTTGCTTCCTGACAACAATACAAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAAACCGCAGTACCCATGCCTTTTTGCTTCCTGACAACAATACAAT  691

seq1  GTATCCAGTTGCCTTGTACATCTGACATTCTGCCAGCCCCACCACGATGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCAGTTGCCTTGTACATCTGACATTCTGCCAGCCCCACCACGATGG  741

seq1  ACTGTACCTCTTCAAACTGCGAGCCCAAAACAAGCCCTGCCTTCCTTCCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTACCTCTTCAAACTGCGAGCCCAAAACAAGCCCTGCCTTCCTTCCA  791

seq1  TTACCCTTTTCAGGCATTTGGTCACAACAGTGAGAAAAATAATTGATATG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCTTTTCAGGCATTTGGTCACAACAGTGAGAAAAATAATTGATATG  841

seq1  TTCTATTCAGTCCTAAGGCTCTAGTTTGCCAGCCCCTGCCTAGACCTTAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTCAGTCCTAAGGCTCTAGTTTGCCAGCCCCTGCCTAGACCTTAA  891

seq1  AGTCACAGAATATGATAGCCAGAAAATCTTAGCACCCTCAGTATACAGAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACAGAATATGATAGCCAGAAAATCTTAGCACCCTCAGTATACAGAT  941

seq1  GGGAAAACTGAGTCATAGAAGTCAGTTTGGTCCCTTTGTGGTACCTGCGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAACTGAGTCATAGAAGTCAGTTTGGTCCCTTTGTGGTACCTGCGC  991

seq1  TGAACCAGGGCTTTCCCTGTCTTTGGTATGATTGATTCTGTAGGTTTGAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCAGGGCTTTCCCTGTCTTTGGTATGATTGATTCTGTAGGTTTGAG  1041

seq1  CTTTGGCTGATGTGACCCCAGGGGGAGAAAAAGGTGGCCTGATCCTTCTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGCTGATGTGACCCCAGGGGGAGAAAAAGGTGGCCTGATCCTTCTT  1091

seq1  CTCCAAGGGCTGGTCCCTGCATCAGAATTC  1126
      ||||||||||||||||||||||||||||||
seq2  CTCCAAGGGCTGGTCCCTGCATCAGAATTC  1121