BAC Information

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BAC

Clone NameB6Ng01-088G10
Chromosome4 (Build37)X (Build37)
Map Location 50,023,276 - 50,024,455105,552,234 - 105,552,769
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneE130309F12Rik, LOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2
Downstream geneLOC666663, LOC100040979
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088G10.bB6Ng01-088G10.g
ACCDH901261DH901262
length1,1801,015
definitionDH901261|Mus musculus domesticus DNA, BAC clone: B6Ng01-088G10, 5' end.DH901262|Mus musculus domesticus DNA, BAC clone: B6Ng01-088G10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(50,023,276 - 50,024,455)(105,552,234 - 105,552,769)
sequence
gaattccttattcaatgggacattggacagatgagatatttcaaatcaag
aagtgcaatattaaaaatgttctttgcacagtggcaaaggctgagacatc
ttttgctatgttggctgtccttctgaatgaactttacagatcatcaagtg
taatcaaatacttgcatggtaaacaaacagaaagcatttcctttctaggg
aggatcctgatggagaggtacaagaagattttctagttgctgggagccat
ttggcaaagaaataatacaagcagacatcattttgagtaaatactccctt
tacaatagtcactgaaaagccattaaacaggccttcagatcaaaatttac
ggcagaacccacagataagattcacagttctttggtttagaaggggcctc
ccgtggttgcacgggggatgtttagggagcttttcttctgcagcactatg
tgttatttaagtgatattatgcatgctaaggattgctctgaaatggaaaa
gaaataaagcataagggtaatacaataaaattcaaataaactgaactaac
atgccagctttgagactcaccggagcctcttggagtcacactggcaaaat
aacatgtccagattaggcaattaagacagggtcctcattagaaaatgtga
aaatgtctgaagggtgtagcaagactgaatgctattaagttgctagtgcc
tgttgtgagtttgtgggatcaccaactagaaaaaaatgtagtagagcaaa
tagcccctgtaagagggtagaagtggagatggcctactgctgacacttgg
aaggtggcatgaaagaggagtaaaggcagctgacagaacctgaagaatct
ggttcttgtctcccttctgctgattctgagcaccactgtttttaagaggg
taggaaacctttgctctgctctggaaagtggagcttgtaacacctgactg
cttggcaaaccctgctagaggcaaataaaacaatggctttgaaaacattc
ttcaaagattaaagtctcaagaattcaggattcccaaagataagcttaaa
agtaaacctctagagccttcccatggtaggtgggctacatttctatttcc
ataaaataaagaatgagagtgggctgcttatttgctataagggaataata
tggagagaaggcattgaccggcgggggagg
gaattctgtaggctttttgtatgtttatgggcatctctttctttatgtta
gggaagttttcttctataattttgttgaagatatttgctggccctttaag
ttgaaaatcttcattctcatctatacgtattatcctattggtcttctcat
tgtgtcctgaacttcctggatgtttgagttaggatctttttgcattttgt
attttcttttattgttgtgtccatgttctctgtgtaatcttctgcaccta
agattctctcttccatctcttgcattctattggtgatgcttgcatctatg
gttcctcttcccaccccacccccctaggatttctacgtccagagttgtct
ccctttgggttttcattattgtttctacttacatttttagatcttggatg
gttttgttcaaatccatcacctatttggttgtgttttcctgtaattcttt
gagggacttttgtgctttctctttaaggacttctacctgtttagcagtgt
tctcctttatttctttaagtgagttattaatgcccttcttaaaatactct
accagcaacatgagatataattttaaatccaaatcttgctttttgggtgt
gttgggggtatccaggactcactgtggtgggagtactggaatctgatgat
acctagtggtcttggtttgtgttagtatgtttacatttcaccatctggtt
atctctggtgttagatattctagctgtctcttgttggagcttgttcctcc
tgtgattctgttagcctgtcagcactcctgggagtccaactctctcctga
gtcccagtggtcagagcagtctctgcattcaagctctggtcttgtaggga
atgtgcaccgaggtctggagctcagttccacctcctggctgaaattgaga
ctcgaagtgaccttgtccagagctttgtgttctgttgcccgtgtgtgctc
tctgtgtgggctggttccctgagagactcgagattcaagatctagcattt
ttttattatctagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_50023276_50024455
seq2: B6Ng01-088G10.b_48_1227

seq1  GAATTCCTTATTCAATGGGACATTGGACAGATGAGATATTTCAAATCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTATTCAATGGGACATTGGACAGATGAGATATTTCAAATCAAG  50

seq1  AAGTGCAATATTAAAAATGTTCTTTGCACAGTGGCAAAGGCTGAGACATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCAATATTAAAAATGTTCTTTGCACAGTGGCAAAGGCTGAGACATC  100

seq1  TTTTGCTATGTTGGCTGTCCTTCTGAATGAACTTTACAGATCATCAAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTATGTTGGCTGTCCTTCTGAATGAACTTTACAGATCATCAAGTG  150

seq1  TAATCAAATACTTGCATGGTAAACAAACAGAAAGCATTTCCTTTCTAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAAATACTTGCATGGTAAACAAACAGAAAGCATTTCCTTTCTAGGG  200

seq1  AGGATCCTGATGGAGAGGTACAAGAAGATTTTCTAGTTGCTGGGAGCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCCTGATGGAGAGGTACAAGAAGATTTTCTAGTTGCTGGGAGCCAT  250

seq1  TTGGCAAAGAAATAATACAAGCAGACATCATTTTGAGTAAATACTCCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAAAGAAATAATACAAGCAGACATCATTTTGAGTAAATACTCCCTT  300

seq1  TACAATAGTCACTGAAAAGCCATTAAACAGGCCTTCAGATCAAAATTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATAGTCACTGAAAAGCCATTAAACAGGCCTTCAGATCAAAATTTAC  350

seq1  GGCAGAACCCACAGATAAGATTCACAGTTCTTTGGTTTAGAAGGGGCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAACCCACAGATAAGATTCACAGTTCTTTGGTTTAGAAGGGGCCTC  400

seq1  CCGTGGTTGCACGGGGGATGTTTAGGGAGCTTTTCTTCTGCAGCACTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGGTTGCACGGGGGATGTTTAGGGAGCTTTTCTTCTGCAGCACTATG  450

seq1  TGTTATTTAAGTGATATTATGCATGCTAAGGATTGCTCTGAAATGGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTTAAGTGATATTATGCATGCTAAGGATTGCTCTGAAATGGAAAA  500

seq1  GAAATAAAGCATAAGGGTAATACAATAAAATTCAAATAAACTGAACTAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAAGCATAAGGGTAATACAATAAAATTCAAATAAACTGAACTAAC  550

seq1  ATGCCAGCTTTGAGACTCACCGGAGCCTCTTGGAGTCACACTGGCAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGCTTTGAGACTCACCGGAGCCTCTTGGAGTCACACTGGCAAAAT  600

seq1  AACATGTCCAGATTAGGCAATTAAGACAGGGTCCTCATTAGAAAATGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTCCAGATTAGGCAATTAAGACAGGGTCCTCATTAGAAAATGTGA  650

seq1  AAATGTCTGAAGGGTGTAGCAAGACTGAATGCTATTAAGTTGCTAGTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCTGAAGGGTGTAGCAAGACTGAATGCTATTAAGTTGCTAGTGCC  700

seq1  TGTTGTGAGTTTGTGGGATCACCAACTAGAAAAAAATGTAGTAGAGCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGAGTTTGTGGGATCACCAACTAGAAAAAAATGTAGTAGAGCAAA  750

seq1  TAGCCCCTGTAAGAGGGTAGAAGTGGAGATGGCCTACTGCTGACACTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCCTGTAAGAGGGTAGAAGTGGAGATGGCCTACTGCTGACACTTGG  800

seq1  AAGGTGGCATGAAAGAGGAGTAAAGGCAGCTGACAGAACCTGAAGAATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGCATGAAAGAGGAGTAAAGGCAGCTGACAGAACCTGAAGAATCT  850

seq1  GGTTCTTGTCTCCCTTCTGCTGATTCTGAGCACCACTGTTTTTAAGAGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTGTCTCCCTTCTGCTGATTCTGAGCACCACTGTTTTTAAGAGGG  900

seq1  TAGGAAACCTTTGCTCTGCTCTGGAAAGTGGAGCTTGTAACACCTGACTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAACCTTTGCTCTGCTCTGGAAAGTGGAGCTTGTAACACCTGACTG  950

seq1  CTTGGCAAACCCTGCTAAGAGGCAAATAAAACAATGGCTTTGAAAACATT  1000
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTTGGCAAACCCTGCT-AGAGGCAAATAAAACAATGGCTTTGAAAACATT  999

seq1  CTTCAAAGATTAAAGTCTCAAAGAATTCAAGGATTCCCAAAGATAAGCTT  1050
      ||||||||||||||||||| |||||||| |||||||||||||||||||||
seq2  CTTCAAAGATTAAAGTCTC-AAGAATTC-AGGATTCCCAAAGATAAGCTT  1047

seq1  AAAAGTAAA-CTCTAGAGCCTTTCCCAT-GTAGGTGGGCTACATTTCTTA  1098
      ||||||||| |||||||||| ||||||| |||||||||||||||||| ||
seq2  AAAAGTAAACCTCTAGAGCC-TTCCCATGGTAGGTGGGCTACATTTC-TA  1095

seq1  TTTCCATAAAATAAAGAATGAGAGTGGGCTGCTTATTTGCATAAAGGGGA  1148
      ||||||||||||||||||||||||||||||||||||||||   ||||| |
seq2  TTTCCATAAAATAAAGAATGAGAGTGGGCTGCTTATTTGCTATAAGGGAA  1145

seq1  TAATA-GGAGAGAAGGCAATGGAGCGGGGGGGG---  1180
      ||||| ||||||||||| || || ||| |||||   
seq2  TAATATGGAGAGAAGGC-ATTGACCGGCGGGGGAGG  1180

seq1: chrX_105552234_105552769
seq2: B6Ng01-088G10.g_71_594 (reverse)

seq1  ATAACTCACTTAAAGAAATACAGGAGAACACTGCTAAAGAGTTACAAGTC  50
      |||||||||||||||||||| ||||||||||||||||| || || |||||
seq2  ATAACTCACTTAAAGAAATAAAGGAGAACACTGCTAAACAGGTAGAAGTC  50

seq1  CTTAAAGAAAAACAGGAAAACACAACCAGTTAGAAGT-CCTTAAAGAAAA  99
      ||||||||       |||| |||||        |||| ||| ||||||  
seq2  CTTAAAGA-------GAAAGCACAA--------AAGTCCCTCAAAGAATT  85

seq1  ACAGGAAAACACATCGAAACAGGTGATGGAAATGAACAAAACCATACTAG  149
      ||||||||||||| | ||| ||||||||||  ||||||||||||| | ||
seq2  ACAGGAAAACACAACCAAATAGGTGATGGATTTGAACAAAACCATCCAAG  135

seq1  AACTAAAAAGGGAAGTAGACACAATAAAGAAAACCAAAAGTGAGGCAACA  199
      | ||||||| | ||||||| ||||||| ||||||| |||| ||| |||| 
seq2  ATCTAAAAATGTAAGTAGAAACAATAATGAAAACCCAAAGGGAGACAACT  185

seq1  CTGGAGATAGAAACACTA-------GGAAAGAGATCTGAAAACATAGATG  242
      |||||  ||||||  |||       ||   | ||   | || ||||||||
seq2  CTGGACGTAGAAATCCTAGGGGGGTGGGGTGGGAAGAGGAACCATAGATG  235

seq1  CGAGCATCAGCAACAGAATACAAGAAATGGAAGAGAGAATCTCAGGTGCA  292
      | ||||||| ||| ||||| ||||| |||||||||||||||| |||||||
seq2  CAAGCATCACCAATAGAATGCAAGAGATGGAAGAGAGAATCTTAGGTGCA  285

seq1  GAAGATTCCATAGAGAACATCCGCACAACAATCAAAGAAAATACAAAATG  342
      ||||||| || |||||||||   ||||||||| |||||||||||||||||
seq2  GAAGATTACACAGAGAACATGGACACAACAATAAAAGAAAATACAAAATG  335

seq1  CAAAAGGATCCTAACTCAAAACATCCAGGAAATCCAGGACACAATGAGAA  392
      ||||| ||||||||||| ||||||||||||| | ||||||||||||||||
seq2  CAAAAAGATCCTAACTC-AAACATCCAGGAAGTTCAGGACACAATGAGAA  384

seq1  GACCAAACCTACGGATAACAGGAGTTGATGAGAATGAAGATTTTCAACTT  442
      ||||||   || |||||| | |  | ||||||||||||||||||||||||
seq2  GACCAA---TA-GGATAATACGTATAGATGAGAATGAAGATTTTCAACTT  430

seq1  AAAGGGCCAGCAAATATCTTCAACAAAATAATAGAAGAAAACTTCCCAAA  492
      ||||||||||||||||||||||||||||| ||||||||||||||||| ||
seq2  AAAGGGCCAGCAAATATCTTCAACAAAATTATAGAAGAAAACTTCCCTAA  480

seq1  CATAAAGAAAGAGATGCCCATGATCATACAAGAAGCATACAGAA  536
      ||||||||||||||||||||| | ||||||| |||| |||||||
seq2  CATAAAGAAAGAGATGCCCATAAACATACAAAAAGCCTACAGAA  524