BAC Information

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BAC

Clone NameB6Ng01-088J02
Chromosome4 (Build37)
Map Location 75,029,626 - 75,030,843
singlet/doubletsinglet
Overlap genenone
Upstream geneJmjd2c, LOC100040258, LOC100039814, LOC636847, 3110001D03Rik, LOC623529, LOC100039833
Downstream geneLOC100039884, LOC667845, Ptprd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088J02.bB6Ng01-088J02.g
ACCDH901385DH901386
length1,2121,153
definitionDH901385|Mus musculus domesticus DNA, BAC clone: B6Ng01-088J02, 5' end.DH901386|Mus musculus domesticus DNA, BAC clone: B6Ng01-088J02, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatcatggtgaatcatagcctaaaagtggatttactcttcaggag
agctttgttaaatttttgagagttcccaacatgtcttgattatgcttcta
ttccttcactcactttttcttccccccaaacaaacaaacaaacaaaagaa
aacaacaacaaaacaaaattgccatccacctattattctagaattataag
ggaaccaaaggaatacatattactgcttccatgttgtctaccaggagaac
acgttttgtagtccatattgtagataacaatctgcaagtatacactgtac
atagatcagcaagatacactgccaacagtggacttgttataaattaaccc
ttcattctatctggttcttggaggaatgctagacctgaagactctaaatg
aacacatcttgagtttaaacagttcatatcctaagagatgacaaagttat
agatcttgcatgtgctcaactggccaggaagaacgacactgcaacaggat
ccttctgcacacgtttattgggagagcattgattgcacaggcgaaagaag
aaccccgaacaaggaaaatgatgctgcttatatacccctccatgtgacgt
gtcagctcctgattagctgctcactcatcaccccactactatgccccagg
atgggcagtgacttggcatgaatttacttttgcacctgcgcacattactt
gtttaccagttaggcacagcggaggctcgtgatggcaattgctcacggct
ctccacatctagacatagatagatatcatggatcacaggatgaggtcagt
catgatcagggacgctcaggaattattaattgcctttgttctattcccta
tgttaccagctctcttgaggtaaatgtactgtaattttatagagtatgat
tctgttgcttcttcctttttcttcttctttttttttgaatagtgcagttc
accctcccagtccaccctccgactgttccgcatcccatacctctgcccta
ctctctgtcttccacagatgttcccccacacaccagaccttctaaactcc
ctggtcttcagtcttcttgagtttagctcatctttcttctgacgagcaca
tacctgccagtctctgctctgaatgtgtttgggggccctctatcagcttg
gtgtatggctctgattgacgattccaatgtctgagaattcagggtccagt
aatgaaactgct
gaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaagcagtctggcggttcctca
tgaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatacagaagatgccccaaccggtaagaacgacatatgctccactat
gttcatagcagccttacttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactattcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaat
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggacctgagatga
aaggatggtccatgtagagacttccttatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgcccgggcctatcaaac
acagaagtggatgctcacagtcagctaatggatggatcacaggctcctat
ggagagctagagaaagtagccaagagctaaagggatctgcaaccctatag
gcgaacaacatatgactaacagtacccgagctctgactctagctgcatat
gtatcaaagatgcctagtcggccatcactgaagaagtcattgaccgcacc
ttaatgccagtacaggaaacctaggacaaatgcaatgatggtagggggaa
tgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_75029626_75030843
seq2: B6Ng01-088J02.b_49_1260

seq1  GAATTCATCATGGTGAATCATAGCCTAAAAGTGGATTTACTCTTCAGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCATGGTGAATCATAGCCTAAAAGTGGATTTACTCTTCAGGAG  50

seq1  AGCTTTGTTAAATTTTTGAGAGTTCCCAACATGTCTTGATTATGCTTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGTTAAATTTTTGAGAGTTCCCAACATGTCTTGATTATGCTTCTA  100

seq1  TTCCTTCACTCACTTTTTCTTCCCCCCAAACAAACAAACAAACAAAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCACTCACTTTTTCTTCCCCCCAAACAAACAAACAAACAAAAGAA  150

seq1  AACAACAACAAAACAAAATTGCCATCCACCTATTATTCTAGAATTATAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAACAAAACAAAATTGCCATCCACCTATTATTCTAGAATTATAAG  200

seq1  GGAACCAAAGGAATACATATTACTGCTTCCATGTTGTCTACCAGGAGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCAAAGGAATACATATTACTGCTTCCATGTTGTCTACCAGGAGAAC  250

seq1  ACGTTTTGTAGTCCATATTGTAGATAACAATCTGCAAGTATACACTGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTTGTAGTCCATATTGTAGATAACAATCTGCAAGTATACACTGTAC  300

seq1  ATAGATCAGCAAGATACACTGCCAACAGTGGACTTGTTATAAATTAACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATCAGCAAGATACACTGCCAACAGTGGACTTGTTATAAATTAACCC  350

seq1  TTCATTCTATCTGGTTCTTGGAGGAATGCTAGACCTGAAGACTCTAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCTATCTGGTTCTTGGAGGAATGCTAGACCTGAAGACTCTAAATG  400

seq1  AACACATCTTGAGTTTAAACAGTTCATATCCTAAGAGATGACAAAGTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATCTTGAGTTTAAACAGTTCATATCCTAAGAGATGACAAAGTTAT  450

seq1  AGATCTTGCATGTGCTCAACTGGCCAGGAAGAACGACACTGCAACAGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTGCATGTGCTCAACTGGCCAGGAAGAACGACACTGCAACAGGAT  500

seq1  CCTTCTGCACACGTTTATTGGGAGAGCATTGATTGCACAGGCGAAAGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGCACACGTTTATTGGGAGAGCATTGATTGCACAGGCGAAAGAAG  550

seq1  AACCCCGAACAAGGAAAATGATGCTGCTTATATACCCCTCCATGTGACGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCGAACAAGGAAAATGATGCTGCTTATATACCCCTCCATGTGACGT  600

seq1  GTCAGCTCCTGATTAGCTGCTCACTCATCACCCCACTACTATGCCCCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCTCCTGATTAGCTGCTCACTCATCACCCCACTACTATGCCCCAGG  650

seq1  ATGGGCAGTGACTTGGCATGAATTTACTTTTGCACCTGCGCACATTACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCAGTGACTTGGCATGAATTTACTTTTGCACCTGCGCACATTACTT  700

seq1  GTTTACCAGTTAGGCACAGCGGAGGCTCGTGATGGCAATTGCTCACGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACCAGTTAGGCACAGCGGAGGCTCGTGATGGCAATTGCTCACGGCT  750

seq1  CTCCACATCTAGACATAGATAGATATCATGGATCACAGGATGAGGTCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACATCTAGACATAGATAGATATCATGGATCACAGGATGAGGTCAGT  800

seq1  CATGATCAGGGACGCTCAGGAATTATTAATTGCCTTTGTTCTATTCCCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATCAGGGACGCTCAGGAATTATTAATTGCCTTTGTTCTATTCCCTA  850

seq1  TGTTACCAGCTCTCTTGAGGTAAATGTACTGTAATTTTATAGAGTATGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACCAGCTCTCTTGAGGTAAATGTACTGTAATTTTATAGAGTATGAT  900

seq1  TCTGTTGCTTCTTCCTTTTTCTTCTTCTTTTTTTTTGAATAGTGCAGTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGCTTCTTCCTTTTTCTTCTTCTTTTTTTTTGAATAGTGCAGTTC  950

seq1  ACCCTCCCAGTCCACCCTCCGACTGTTCCGCATCCCATACCTCTGCCCTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCCCAGTCCACCCTCCGACTGTTCCGCATCCCATACCTCTGCCCTA  1000

seq1  CTCTCCTGTC-TCCACAAGGATG-TCCCCCACACACCAGACC-TCTAAAC  1047
      |||| ||||| ||||||  |||| |||||||||||||||||| |||||||
seq2  CTCT-CTGTCTTCCACA--GATGTTCCCCCACACACCAGACCTTCTAAAC  1047

seq1  TCCCTGGGTCTTCAGTC-TCTTGAGGTTTAGGCTCATCTT--CTCTGAAC  1094
      ||||| ||||||||||| |||||| ||||| |||||||||   |||| ||
seq2  TCCCT-GGTCTTCAGTCTTCTTGA-GTTTA-GCTCATCTTTCTTCTG-AC  1093

seq1  GAGCACATACCTGGCAGTCCTCTGCTCTGTATGTG-TTGGGGGCCTCCTA  1143
      ||||||||||||| |||| |||||||||| ||||| |||||||||  |||
seq2  GAGCACATACCTGCCAGT-CTCTGCTCTGAATGTGTTTGGGGGCCCTCTA  1142

seq1  TCAGC-TGGTGTATGCTTCCTGGTTGACGA-TCCAATGTCTGAGAGATCT  1191
      ||||| |||||||||  | ||| ||||||| |||||||||||||| || |
seq2  TCAGCTTGGTGTATGGCT-CTGATTGACGATTCCAATGTCTGAGA-AT-T  1189

seq1  CAGGGGTCCAGGTTAATTGAAACTGCT  1218
      || ||||||||  ||| ||||||||||
seq2  CA-GGGTCCAG--TAA-TGAAACTGCT  1212