BAC Information

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BAC

Clone NameB6Ng01-088L21
Chromosome6 (Build37)4 (Build37)
Map Location 12,516,047 - 12,517,13195,143,172 - 95,144,102
singlet/doubletsingletsinglet
Overlap geneThsd7a
Upstream geneNdufa4, Phf14, LOC100040844, EG625347, LOC435879
Downstream geneLOC667735, LOC384350, Tmem106b, Gm467, Gm725, 1700016P04Rik, LOC100040478
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088L21.bB6Ng01-088L21.g
ACCDH901514DH901515
length1,0761,008
definitionDH901514|Mus musculus domesticus DNA, BAC clone: B6Ng01-088L21, 5' end.DH901515|Mus musculus domesticus DNA, BAC clone: B6Ng01-088L21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(12,516,047 - 12,517,131)(95,143,172 - 95,144,102)
sequence
gaattccagatgctcacgttctcttgagtgaaaaaaaatttttttctagt
gtcaaacctattgtacctgctcttgaaattgctagtccttggtcataatc
gctaaagatgttgacagagaagctctatacacaccagtttcaaacaggct
caaagttggtattcaggttgtagcaattaaagcttcaggacttgtggaca
ataggaagaaccagcttacagatatgctattgccactggtggtgcggtgt
ttggaaaagaggagttgaaattaaatcttgaagatgttcaagctcatgac
ttatgaaaagttggaaagatgattgtcaccaaagatgatgccatgctatt
gagagcaaaatgtgtcgaagctcaaattgaaagatatattccctgagtag
ctagacatcacagctggtgaatatgaaaagaaacggctgaatgagcggct
cgctaaactctcaggagtacctgcgctcaagcatggagggacaagtggtg
tggaattgagtgagaagaacgacagttacagatgctctcagggctacaag
agcagcagtagacgaaggcattgttctaggaggggttgtgtctgcttctg
tgcaccctacccttggattcattaaagcctgataatgaagatcagaaaat
aggtatagaaattattaaaaggatactcaaaatccctgcaatgacaattg
ctaagaatgcaggtgttgaaggacctttcatagttgagaaaattctgcag
agttcctcagaagttggttatgacgccatgcttggagattttgtgaacga
ggtggaaaatggaatcattgagtccactctggctgaaacagttgccgtac
tgagctgggcagtgatggtgcacacctataattcccagcacttggtaggc
agacgcccgctggatgtctgagctcccacgctagcctgctctaccagatg
agctccagggacagccagggctacccagaaaaccttgtctcaacacaaca
acgaccaagctagatatgaacaaccaaaacaaactgccttactggtgctg
ctgagtgactcatgctaattgacagc
gaattcatgttggagactattaatgtgaatgaagaacagggagagggaga
taaggaagagggatggaggagagggaatgctgaggataagaaagggagac
gaatgaataagaagcatttcagctctgcaaaacacacaattgacgcctgc
actttgctttagttttcttgagttttaaaacctgaatggtcccataacca
gctgaagatgtgaattgtgatgtcaagccccccagtctcagggcagagca
gtttgcagagcaggctgccaggtgcctgctcagaaggctgctcagatgtt
acaacacgtggcagttttatacatacacacacattgcttccaaaatacta
agataaatgacatatttcacgtggggctaaagaagatagatgataggaag
atgtctgaaaaaacaaaggaggaattttagatgggatgtagggaaagagg
tgatctttgggatataactgaagaatgcagatgctccagatgtgcaaaga
accaaggcagagcatcctgtacagggagatgggatggcatttgcaaagac
tgagaccaggaaaaggccaggcttgactgtgtgctgtccatgtaggtgca
caaacacagatgtcctcagtggcctctcagaaacctaagctcttctcaaa
tgtagtgtctcttagccttggtagtggactccacatctgttttttgctga
agagtacagcaaggacatggctgtcattacccaggtggcagttggtgatg
cactcctacagcaatactctttttttcaagtctgagattcctagccacaa
tcccacagcgaggagctgcagttgaatcctaaaacccagctttctcccac
gccaaccatcgactgggtgccagggctggaattataacctagcaactgag
gacagaaataattggtcgcattagtgcctggcagctgcgctggggttccc
ctctaaaagaagtcaggaactaaagaactgagaacagtttactttttcta
cccaggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_12516047_12517131
seq2: B6Ng01-088L21.b_46_1121

seq1  GAATTCCAAGATGCTCACGTTCTCTTGAGTGAAAAAAAATTTTTTTCTAG  50
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCC-AGATGCTCACGTTCTCTTGAGTGAAAAAAAATTTTTTTCTAG  49

seq1  TGTCAAACCTATTGTACCTGCTCTTGAAATTGCTAGTCCTTGGTCATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAACCTATTGTACCTGCTCTTGAAATTGCTAGTCCTTGGTCATAAT  99

seq1  CGCTAAAGATGTTGACAGAGAAGCTCTATACACACCAGTTTCAAACAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTAAAGATGTTGACAGAGAAGCTCTATACACACCAGTTTCAAACAGGC  149

seq1  TCAAAGTTGGTATTCAGGTTGTAGCAATTAAAGCTTCAGGACTTGTGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTTGGTATTCAGGTTGTAGCAATTAAAGCTTCAGGACTTGTGGAC  199

seq1  AATAGGAAGAACCAGCTTACAGATATGCTATTGCCACTGGTGGTGCGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGAAGAACCAGCTTACAGATATGCTATTGCCACTGGTGGTGCGGTG  249

seq1  TTTGGAAAAGAGGAGTTGAAATTAAATCTTGAAGATGTTCAAGCTCATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAAAGAGGAGTTGAAATTAAATCTTGAAGATGTTCAAGCTCATGA  299

seq1  CTTATGAAAAGTTGGAAAGATGATTGTCACCAAAGATGATGCCATGCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGAAAAGTTGGAAAGATGATTGTCACCAAAGATGATGCCATGCTAT  349

seq1  TGAGAGCAAAATGTGTCGAAGCTCAAATTGAAAGATATATTCCCTGAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGCAAAATGTGTCGAAGCTCAAATTGAAAGATATATTCCCTGAGTA  399

seq1  GCTAGACATCACAGCTGGTGAATATGAAAAGAAACGGCTGAATGAGCGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGACATCACAGCTGGTGAATATGAAAAGAAACGGCTGAATGAGCGGC  449

seq1  TCGCTAAACTCTCAGGAGTACCTGCGCTCAAGCATGGAGGGACAAGTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTAAACTCTCAGGAGTACCTGCGCTCAAGCATGGAGGGACAAGTGGT  499

seq1  GTGGAATTGAGTGAGAAGAACGACAGTTACAGATGCTCTCAGGGCTACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAATTGAGTGAGAAGAACGACAGTTACAGATGCTCTCAGGGCTACAA  549

seq1  GAGCAGCAGTAGACGAAGGCATTGTTCTAGGAGGGGTTGTGTCTGCTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCAGTAGACGAAGGCATTGTTCTAGGAGGGGTTGTGTCTGCTTCT  599

seq1  GTGCACCCTACCCTTGGATTCATTAAAGCCTGATAATGAAGATCAGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACCCTACCCTTGGATTCATTAAAGCCTGATAATGAAGATCAGAAAA  649

seq1  TAGGTATAGAAATTATTAAAAGGATACTCAAAATCCCTGCAATGACAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATAGAAATTATTAAAAGGATACTCAAAATCCCTGCAATGACAATT  699

seq1  GCTAAGAATGCAGGTGTTGAAGGACCTTTCATAGTTGAGAAAATTCTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGAATGCAGGTGTTGAAGGACCTTTCATAGTTGAGAAAATTCTGCA  749

seq1  GAGTTCCTCAGAAGTTGGTTATGACGCCATGCTTGGAGATTTTGTGAACG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCTCAGAAGTTGGTTATGACGCCATGCTTGGAGATTTTGTGAACG  799

seq1  TGGTGGAAAATGGAATCATTGATTCAACTAAGGTTGTAAGAATTGCCTTA  850
       ||||||||||||||||||||| || |||  || || || | ||||| ||
seq2  AGGTGGAAAATGGAATCATTGAGTCCACTCTGGCTGAAACAGTTGCCGTA  849

seq1  CTGAGCTGGGCAGTGGTGGTGCACACCTTTAA-TCCCAGCACTTGGGAGG  899
      ||||||||||||||| |||||||||||| ||| ||||||||||||| |||
seq2  CTGAGCTGGGCAGTGATGGTGCACACCTATAATTCCCAGCACTTGGTAGG  899

seq1  CAGA-GGCAGGAGGATTTCTGAG-TTCGAGGCTAGCCTGGTCTACAAAGT  947
      |||| | | |  |||| |||||| | | | ||||||||| ||||| |  |
seq2  CAGACGCCCGCTGGATGTCTGAGCTCCCACGCTAGCCTGCTCTACCAGAT  949

seq1  GAGCTCCA-GGACAGCCAGGGCTACACAGAAAAACCTTGTCTCAAAAAAC  996
      |||||||| |||||||||||||||| ||| ||||||||||||||| |   
seq2  GAGCTCCAGGGACAGCCAGGGCTACCCAG-AAAACCTTGTCTCAACA---  995

seq1  AAAAAACAACAAAACAAAAAAACCAAACAAACAAAAAACAAAACTGCCTT  1046
       || ||| || || | | | |    ||||| |||||    ||||||||||
seq2  CAACAACGACCAAGCTAGATA--TGAACAACCAAAA---CAAACTGCCTT  1040

seq1  ACTGGGTGCTGCTGGGGTGGCTTCCTTGCTAATTG-CAGC  1085
      ||| ||||||||| | ||| ||  | ||||||||| ||||
seq2  ACT-GGTGCTGCT-GAGTGACT--CATGCTAATTGACAGC  1076

seq1: chr4_95143172_95144102
seq2: B6Ng01-088L21.g_144_1074 (reverse)

seq1  CACCTGGGCTGAGAAAAGTAAACTTGTCTCAGTTCTTTAGTCCCTGACTC  50
      ||||||||  || |||||||||||  ||||||||||||||| ||||||| 
seq2  CACCTGGGTAGA-AAAAGTAAACTGTTCTCAGTTCTTTAGTTCCTGACT-  48

seq1  CCTTCTAGAGTGGAGCCCCAGCGCAGCTGCCAGGCACTAATGCGACCAAT  100
       ||| ||||| ||| |||||||||||||||||||||||||||||||||||
seq2  TCTTTTAGAGGGGAACCCCAGCGCAGCTGCCAGGCACTAATGCGACCAAT  98

seq1  TATTTCTGTCCTCAGTTACTAGGTAATAAATCCAGCCCTGGCACCAAGTC  150
      ||||||||||||||||| |||||| |||| ||||||||||||||| ||||
seq2  TATTTCTGTCCTCAGTTGCTAGGTTATAATTCCAGCCCTGGCACCCAGTC  148

seq1  GATGGTTTGGCGTGGGAGAAAGCTTGGTTTTAGGA-TCAACTGCAGCTCC  199
      ||||| |||||||||||||||||| |||||||||| ||||||||||||||
seq2  GATGG-TTGGCGTGGGAGAAAGCTGGGTTTTAGGATTCAACTGCAGCTCC  197

seq1  TCGCTGTGGGATTGTGGCTAGGAATCTCAGACTTG-AAAAAAGAGTATTG  248
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCGCTGTGGGATTGTGGCTAGGAATCTCAGACTTGAAAAAAAGAGTATTG  247

seq1  CTGTAGGAGTGCATCACCAACTGCCACCTGGGT-ATGACAGCCATGTCCT  297
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTGTAGGAGTGCATCACCAACTGCCACCTGGGTAATGACAGCCATGTCCT  297

seq1  TGCTGTACTCTTCAGCACAAGACAGATGTGGAGTCCACTACCAAGGCTAA  347
      ||||||||||||||||| || |||||||||||||||||||||||||||||
seq2  TGCTGTACTCTTCAGCAAAAAACAGATGTGGAGTCCACTACCAAGGCTAA  347

seq1  GAGACACTACATTTGAGAAGAGCTTAGGTTTCTGAGAGGCCACTGAGGAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACACTACATTTGAGAAGAGCTTAGGTTTCTGAGAGGCCACTGAGGAC  397

seq1  ATCTGTGTTTGTGCACCTACATGGACAGCACACAGTCAAGCCTGGCCTTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGTTTGTGCACCTACATGGACAGCACACAGTCAAGCCTGGCCTTT  447

seq1  TCCTGGTCTCAGTCTTTGCAAATGCCATCCCATCTCCCTGTACAGGATGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTCTCAGTCTTTGCAAATGCCATCCCATCTCCCTGTACAGGATGC  497

seq1  TCTGCCTTGGTTCTTTGCACATCTGGAGCATCTGCATTCTTCAGTTATAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTTGGTTCTTTGCACATCTGGAGCATCTGCATTCTTCAGTTATAT  547

seq1  CCCAAAGATCACCTCTTTCCCTACATCCCATCTAAAATTCCTCCTTTGTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGATCACCTCTTTCCCTACATCCCATCTAAAATTCCTCCTTTGTT  597

seq1  TTTTCAGACATCTTCCTATCATCTATCTTCTTTAGCCCCACGTGAAATAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGACATCTTCCTATCATCTATCTTCTTTAGCCCCACGTGAAATAT  647

seq1  GTCATTTATCTTAGTATTTTGGAAGCAATGTGTGTGTATGTATAAAACTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTATCTTAGTATTTTGGAAGCAATGTGTGTGTATGTATAAAACTG  697

seq1  CCACGTGTTGTAACATCTGAGCAGCCTTCTGAGCAGGCACCTGGCAGCCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGTGTTGTAACATCTGAGCAGCCTTCTGAGCAGGCACCTGGCAGCCT  747

seq1  GCTCTGCAAACTGCTCTGCCCTGAGACTGGGGGGCTTGACATCACAATTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCAAACTGCTCTGCCCTGAGACTGGGGGGCTTGACATCACAATTC  797

seq1  ACATCTTCAGCTGGTTATGGGACCATTCAGGTTTTAAAACTCAAGAAAAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTCAGCTGGTTATGGGACCATTCAGGTTTTAAAACTCAAGAAAAC  847

seq1  TAAAGCAAAGTGCAGGCGTCAATTGTGTGTTTTGCAGAGCTGAAATGCTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCAAAGTGCAGGCGTCAATTGTGTGTTTTGCAGAGCTGAAATGCTT  897

seq1  CTTATTCATTCGTCTCCCTTTCTTATCCTCAGCA  931
      ||||||||||||||||||||||||||||||||||
seq2  CTTATTCATTCGTCTCCCTTTCTTATCCTCAGCA  931