BAC Information

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BAC

Clone NameB6Ng01-089F04
Chromosome4 (Build37)
Map Location 57,270,827 - 57,478,497
singlet/doubletdoublet
Overlap genePtpn3, LOC100041460, 1700042G15Rik, LOC100041342, LOC619973, LOC667049
Upstream geneActl7b, Actl7a, Ikbkap, BC026590, Ctnnal1, D730040F13Rik, 6430704M03Rik, Epb4.1l4b
Downstream genePalm2, LOC100041513, Akap2, D630039A03Rik, Txn1, Txndc8, Svep1, Musk, Edg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089F04.bB6Ng01-089F04.g
ACCDH901931DH901932
length1,080967
definitionDH901931|Mus musculus domesticus DNA, BAC clone: B6Ng01-089F04, 5' end.DH901932|Mus musculus domesticus DNA, BAC clone: B6Ng01-089F04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,477,418 - 57,478,497)(57,270,827 - 57,271,798)
sequence
gaattctgattagagtcccaagggaccatactttgaagtcagtctgcatg
cccaacataaagggacagcaattctgccccacccattgttcagcaaacat
gtttattagtttccaggatcttttctcattcttgccacagatcaacaaaa
tgcctcattgactaaaaaaagttacaatatataattgaaagttacgagtc
aaagaaaaagtaattaacgctgctgtggtttgtatatgaagtgtccccca
gtgttgaaagattccagtgttgaaagctggattcccaagtgacaggttta
ggggcagtgaatagatcgtgaaccttcagaagctgatgtcctggggaaac
taatgaacagcattaataatctaaggctaataaaatagaaaacaataaca
tatgaagactaaaacacaagctatccctgtagatccttaaagcattaaaa
agataaagggctatcataagaaactttgtcagttaacataacaacctaaa
ttatgtggaaattttccttcgaaaaagtgatttgctcaccctagcacaaa
atcagaatacgtagcattgaaaatcttttatcaatcaaggcaatctggac
catgtcactagtgagctctgctgagcattttgtcagaaaccatgatgccc
tctcttaaaccctccaggaaatagggagcactcacacttctacctgagag
cactgagaccatcattgctctctcaccaaagcctgataagagtatttcaa
aaacaacccatcacagaccacctctctcgtgagcataatcaaaacataac
tcaacaacctattagtacagaagaccatattgtaaggttctagaaaaata
catttaacagatgtaatacttacttgaaatttataaaaacaaaaaacccc
atcagcaaacaaaacaagaagaaaacatcttgaatttgagccttttaaag
aaacttatgtgtgggcaggtatttatccaattggtgaaccctgaaatcat
gaaatggaaaaggcttatttcttgttggagtggggcttcagccctagcac
ataccttaacccaagtgctttctggaaatg
gaattcaaaattctcattaccttccttcgcaaacatccatcttcagttgt
aagaaatatagatgcctgggaaacaaacgtgttcgttaacaagtgctcag
aatgtggtaagtgagcaagaacaacaaagcacacatttgaaaaacagagt
agatgcaaaaaccattttgcctatttgcaaactgcctaggtgctctgtgc
tagggaggactgaggggatatatggggtaagagccaagggtgcctcccta
cccacagcttgctgcatgggctttcaactaggcacagggacccacagcac
tctgtacaagctgcccgcgcacgcacatgcacacacacacacacacattg
ctctgtgaaactgctaagaggggagtgtgggtctgtgaagatcacagctt
ggctggagtgcgacacgcagctgggctttttcctggagtctaagaaccac
tgggggctgaagggaaagtattggtagcctagttaccaggcaagcagcag
agtcagctttgaaagcatggagctgtcctgggggggtaaactattccagg
cccctgagccctgcaggctgcatctctgtctgtcctgggaaagagagaag
aaaaggaggccagcatgagcagccctggtggggccaggaagcgccatggg
gtggcatcagcaaccttggtgaggccaggaagcaccatggagtggcatca
gcagccctggtgaggccaggaagtgccatggaggcatttatatttaggga
tgcggcacacatgtgacgcttggctcctacctcccactcttttttaaacc
ccagattcaagcgtgattgacattccagggtctggccaaagatgacaaaa
gggaagccttcttgaaagctattcctacgatgcagaagttgcggggcggg
ggaaagatcactctgtcatttaactacctatctcttgttccctgggttga
caaggtcacggggctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_57477418_57478497
seq2: B6Ng01-089F04.b_51_1130 (reverse)

seq1  CATTTCCAGAAAGCACTTGGGTTAAAGGTGTGTGCTAGGGCTG-AGCCAC  49
      ||||||||||||||||||||||| ||||| ||||||||||||| |||| |
seq2  CATTTCCAGAAAGCACTTGGGTT-AAGGTATGTGCTAGGGCTGAAGCCCC  49

seq1  ACTACAACAAGAAAT-AGCTTTTTCCATTTCATGATGTCAGGGTTCACAA  98
      ||| ||||||||||| ||| |||||||||||||||| ||||||||||| |
seq2  ACTCCAACAAGAAATAAGCCTTTTCCATTTCATGATTTCAGGGTTCACCA  99

seq1  TGTGATTAAATATCCTG-CCACACATAGATGTCTTTAAAAAGGCTCAAAT  147
        ||  |||||| |||| |||||||||  | ||||| |||||||||||||
seq2  ATTGGATAAATA-CCTGCCCACACATAAGTTTCTTT-AAAAGGCTCAAAT  147

seq1  TCAAGATGTTTTCTTCTTGTTATGTTTGCTGATGGGGGTTTTTGTTTTTA  197
      ||||||||||||||||||||| ||||||||||||||| ||||||||||||
seq2  TCAAGATGTTTTCTTCTTGTTTTGTTTGCTGATGGGGTTTTTTGTTTTTA  197

seq1  TAAATTTCAAGTAAGTATTACATCTGTTAAATGTATTTTTCTAG-ACCTT  246
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TAAATTTCAAGTAAGTATTACATCTGTTAAATGTATTTTTCTAGAACCTT  247

seq1  ACAATATGGTCTTCTGTACTAATAGGTTGTTGAGTTATGTTTTTGATTAT  296
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ACAATATGGTCTTCTGTACTAATAGGTTGTTGAGTTATG-TTTTGATTAT  296

seq1  GCTCACGAGAGAGGTGGTCTGTGATGGGTTGTTTTTGAAATACTCTTATC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACGAGAGAGGTGGTCTGTGATGGGTTGTTTTTGAAATACTCTTATC  346

seq1  AGGCTTTGGTGAGAGAGCAATGATGGTCTCAGTGCTCTCAGGTAGAAGTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTGGTGAGAGAGCAATGATGGTCTCAGTGCTCTCAGGTAGAAGTG  396

seq1  TGAGTGCTCCCTATTTCCTGGAGGGTTTAAGAGAGGGCATCATGGTTTCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGCTCCCTATTTCCTGGAGGGTTTAAGAGAGGGCATCATGGTTTCT  446

seq1  GACAAAATGCTCAGCAGAGCTCACTAGTGACATGGTCCAGATTGCCTTGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAATGCTCAGCAGAGCTCACTAGTGACATGGTCCAGATTGCCTTGA  496

seq1  TTGATAAAAGATTTTCAATGCTACGTATTCTGATTTTGTGCTAGGGTGAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAAAAGATTTTCAATGCTACGTATTCTGATTTTGTGCTAGGGTGAG  546

seq1  CAAATCACTTTTTCGAAGGAAAATTTCCACATAATTTAGGTTGTTATGTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCACTTTTTCGAAGGAAAATTTCCACATAATTTAGGTTGTTATGTT  596

seq1  AACTGACAAAGTTTCTTATGATAGCCCTTTATCTTTTTAATGCTTTAAGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGACAAAGTTTCTTATGATAGCCCTTTATCTTTTTAATGCTTTAAGG  646

seq1  ATCTACAGGGATAGCTTGTGTTTTAGTCTTCATATGTTATTGTTTTCTAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACAGGGATAGCTTGTGTTTTAGTCTTCATATGTTATTGTTTTCTAT  696

seq1  TTTATTAGCCTTAGATTATTAATGCTGTTCATTAGTTTCCCCAGGACATC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAGCCTTAGATTATTAATGCTGTTCATTAGTTTCCCCAGGACATC  746

seq1  AGCTTCTGAAGGTTCACGATCTATTCACTGCCCCTAAACCTGTCACTTGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTGAAGGTTCACGATCTATTCACTGCCCCTAAACCTGTCACTTGG  796

seq1  GAATCCAGCTTTCAACACTGGAATCTTTCAACACTGGGGGACACTTCATA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCAGCTTTCAACACTGGAATCTTTCAACACTGGGGGACACTTCATA  846

seq1  TACAAACCACAGCAGCGTTAATTACTTTTTCTTTGACTCGTAACTTTCAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACCACAGCAGCGTTAATTACTTTTTCTTTGACTCGTAACTTTCAA  896

seq1  TTATATATTGTAACTTTTTTTAGTCAATGAGGCATTTTGTTGATCTGTGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATATTGTAACTTTTTTTAGTCAATGAGGCATTTTGTTGATCTGTGG  946

seq1  CAAGAATGAGAAAAGATCCTGGAAACTAATAAACATGTTTGCTGAACAAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATGAGAAAAGATCCTGGAAACTAATAAACATGTTTGCTGAACAAT  996

seq1  GGGTGGGGCAGAATTGCTGTCCCTTTATGTTGGGCATGCAGACTGACTTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGGCAGAATTGCTGTCCCTTTATGTTGGGCATGCAGACTGACTTC  1046

seq1  AAAGTATGGTCCCTTGGGACTCTAATCAGAATTC  1080
      ||||||||||||||||||||||||||||||||||
seq2  AAAGTATGGTCCCTTGGGACTCTAATCAGAATTC  1080

seq1: chr4_57270827_57271798
seq2: B6Ng01-089F04.g_70_1036

seq1  GAATTCAAAATTCTCATTACCTTCCTTCGCAAACATCCATCTTCAGTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATTCTCATTACCTTCCTTCGCAAACATCCATCTTCAGTTGT  50

seq1  AAGAAATATAGATGCCTGGGAAACAAACGTGTTCGTTAACAAGTGCTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATATAGATGCCTGGGAAACAAACGTGTTCGTTAACAAGTGCTCAG  100

seq1  AATGTGGTAAGTGAGCAAGAACAACAAAGCACACATTTGAAAAACAGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGTAAGTGAGCAAGAACAACAAAGCACACATTTGAAAAACAGAGT  150

seq1  AGATGCAAAAACCATTTTGCCTATTTGCAAACTGCCTAGGTGCTCTGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCAAAAACCATTTTGCCTATTTGCAAACTGCCTAGGTGCTCTGTGC  200

seq1  TAGGGAGGACTGAGGGGATATATGGGGTAAGAGCCAAGGGTGCCTCCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAGGACTGAGGGGATATATGGGGTAAGAGCCAAGGGTGCCTCCCTA  250

seq1  CCCACAGCTTGCTGCATGGGCTTTCAACTAGGCACAGGGACCCACAGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGCTTGCTGCATGGGCTTTCAACTAGGCACAGGGACCCACAGCAC  300

seq1  TCTGTACAAGCTGCCCGCGCACGCACATGCACACACACACACACACATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTACAAGCTGCCCGCGCACGCACATGCACACACACACACACACATTG  350

seq1  CTCTGTGAAACTGCTAAGAGGGGAGTGTGGGTCTGTGAAGATCACAGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGAAACTGCTAAGAGGGGAGTGTGGGTCTGTGAAGATCACAGCTT  400

seq1  GGCTGGAGTGCGACACGCAGCTGGGCTTTTTCCTGGAGTCTAAGAACCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGAGTGCGACACGCAGCTGGGCTTTTTCCTGGAGTCTAAGAACCAC  450

seq1  TGGGGGCTGAAGGGAAAGTATTGGTAGCCTAGTTACCAGGCAAGCAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGCTGAAGGGAAAGTATTGGTAGCCTAGTTACCAGGCAAGCAGCAG  500

seq1  AGTCAGCTTTGAAAGCATGGAGCTGTCCTGGGGGGGTAAACTATTCCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGCTTTGAAAGCATGGAGCTGTCCTGGGGGGGTAAACTATTCCAGG  550

seq1  CCCCTGAGCCCTGCAGGCTGCATCTCTGTCTGTCCTGGGAAAGAGAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGAGCCCTGCAGGCTGCATCTCTGTCTGTCCTGGGAAAGAGAGAAG  600

seq1  AAAAGGAGGCCAGCATGAGCAGCCCTGGTGGGGCCAGGAAGCGCCATGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAGGCCAGCATGAGCAGCCCTGGTGGGGCCAGGAAGCGCCATGGG  650

seq1  GTGGCATCAGCAACCTTGGTGAGGCCAGGAAGCACCATGGAGTGGCATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCATCAGCAACCTTGGTGAGGCCAGGAAGCACCATGGAGTGGCATCA  700

seq1  GCAGCCCTGGTGAGGCCAGGAAGTGCCATGGAGGCATTTATATTTAGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCCTGGTGAGGCCAGGAAGTGCCATGGAGGCATTTATATTTAGGGA  750

seq1  TGCGGCACACATGTGACGCTTGGCTCCTACCTCCCACTCTTTTTTAAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGCACACATGTGACGCTTGGCTCCTACCTCCCACTCTTTTTTAAACC  800

seq1  CCAGATTCAAGCGGGATTGACATTCCAGGGTCTGGCCAAAGATGACAAAA  850
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCAGATTCAAGCGTGATTGACATTCCAGGGTCTGGCCAAAGATGACAAAA  850

seq1  GGGAAGCC-TCCTGAAAGCTAATACCGACGATGCAGAAGTGCCGGGGCGG  899
      |||||||| || |||||||| || || |||||||||||||  ||||||||
seq2  GGGAAGCCTTCTTGAAAGCT-ATTCCTACGATGCAGAAGTTGCGGGGCGG  899

seq1  GGGAGAGATCACTCTGTCAATTTAAACAAACCAGTCTCATGTTCCTTGGG  949
      |||| ||||||||||||| ||||||    |||  |||| |||||| | ||
seq2  GGGAAAGATCACTCTGTC-ATTTAA--CTACCTATCTCTTGTTCCCT-GG  945

seq1  GTTGACAAAGGTCACGGGGCTGG  972
      |||||| ||||||||||||||||
seq2  GTTGAC-AAGGTCACGGGGCTGG  967