BAC Information

Click to search

BAC

Clone NameB6Ng01-089G13
Chromosome13 (Build37)4 (Build37)
Map Location 35,325,597 - 35,326,770151,310,857 - 151,311,411
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene3110004L20Rik, LOC620132, EG666666, 1300014I06Rik, D0H6S2654E, EG432746, LOC666677, Prpf4b, 4933417A18Rik, LOC666697, 1810022C23Rik, Peci
Downstream geneCdyl, Rpp40, LOC100041568, Ppp1r3g, Lyrm4, LOC100042773, Fars2, LOC100041590
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089G13.bB6Ng01-089G13.g
ACCDH901994DH901995
length1,152814
definitionDH901994|Mus musculus domesticus DNA, BAC clone: B6Ng01-089G13, 5' end.DH901995|Mus musculus domesticus DNA, BAC clone: B6Ng01-089G13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(35,325,597 - 35,326,770)(151,310,857 - 151,311,411)
sequence
gaattctctctggccacctgctcatcccacctgggcagcatgcaaagctg
tcattgagatggagtgtcatcaaatagtgtctgccacctacttaatttaa
cagcctcctgctttcagtgcagattttattttggctgaattcaggggctg
cgctgcagatggctcaccaggagtgactattcatgccagctgttggcctc
caggagactgaacagagccccatcctgtgagctgtgacccagcttctctg
ctcttcagaaatcttccagtgtcatctgtacaatgtttcccagacctctc
taaacatgggctagcctgtcaccagcaggcactcatagaattaccgtgac
aagctaaggacgctgccaatacctctgaagctttgtgaccaccatcttat
ccttctgtccagccacattcagtccttggtcacctcttcttattgatcat
ttccctcggggacctcaaacttccccttcatcttcagttactgtgatgtg
acactcctcagcccccacttgcatcctctcttggggtgctcatggcccgt
ctctggctacttacaacaagaagtcatacacatcccacacagccagtaga
ctcccacagaagctcttgagtttcaagccatccaagccttgctcatctga
gacaagatgccagagttcctagctctcccctcttaggctccctcactgcc
atctagccatcaactcccactgaatgtacccagtattttggctcttctta
ttccagtttccattgccttcaggagtctttcttttgcacttaaaagagta
cagttacattcaatggcaatcctctgtctggccttggctcctatattact
tacttttcttactactgtgactaatacctgacaaacaactcatgggggaa
aagggttcttttgctccatggttgagacttagcccatggagggaatggag
gaatttgtggcaatgggagtgcatggttcagactccttacatctcagtga
ccaaaagcagagacgggacacgtagctcatcgtttctccttttctccctt
atttctgtctagacctgtactggctagttggtcaactgaccagctggagt
acacagagagaaggagcctcaatgagcatgcctcatgagatcacctgtaa
gg
gaattcatttatttccttggttaatttattaccagaaaatcttatagcca
ttgacaataggattttttttcttaatttctcagtgattttattctttagt
agaaaaaaatacacttcagggtttcatgtgagggtaggggtgtgcatttg
tttgtgtgtgtgtttgtttgtttgtgtgtgtgtgttgattctgtatcctg
caactttgctaaattcacctataattataatgatttttagtgaagtcttt
gtatttttctatatgtaattcacatcatgtataagtgtgtttcaggacag
ccagggctatacagagaaaccctgtcttggaaaaaaaataaaaaagatta
tttgaacaccccctttttcctgttttgggtgtcttttatttcttcagcat
ggattattgttcaggctgagacttccaaaatattacataagaatggtaaa
agtgaacttgttcctattcttagaacaaatggtttcagattctcaccagt
tgacatcatatagcttatttgctgtataaaggtaaatccttagatagtta
attttctagtggtttttaatgttgaatgtaagcatttttattaattgaag
tattgtttttacccctaactctagtgacagactttgttacagttattaat
ttgtgtcccctggattaaataccacttgatcatgacctgccattttaatt
ttttatttgctttaattttattgagaactttttacatctaaggttcctcg
ggaaattggtctatatatccttttattgtgtccttgatagttttagaatc
catgtgacctggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_35325597_35326770
seq2: B6Ng01-089G13.b_45_1196

seq1  GAATTCTCTCTGGCCACCTGCTCATCCCACCTGGGCAGCATGCAAAGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTGGCCACCTGCTCATCCCACCTGGGCAGCATGCAAAGCTG  50

seq1  TCATTGAGATGGAGTGTCATCAAATAGTGTCTGCCACCTACTTAATTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGAGATGGAGTGTCATCAAATAGTGTCTGCCACCTACTTAATTTAA  100

seq1  CAGCCTCCTGCTTTCAGTGCAGATTTTATTTTGGCTGAATTCAGGGGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCCTGCTTTCAGTGCAGATTTTATTTTGGCTGAATTCAGGGGCTG  150

seq1  CGCTGCAGATGGCTCACCAGGAGTGACTATTCATGCCAGCTGTTGGCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGCAGATGGCTCACCAGGAGTGACTATTCATGCCAGCTGTTGGCCTC  200

seq1  CAGGAGACTGAACAGAGCCCCATCCTGTGAGCTGTGACCCAGCTTCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGACTGAACAGAGCCCCATCCTGTGAGCTGTGACCCAGCTTCTCTG  250

seq1  CTCTTCAGAAATCTTCCAGTGTCATCTGTACAATGTTTCCCAGACCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCAGAAATCTTCCAGTGTCATCTGTACAATGTTTCCCAGACCTCTC  300

seq1  TAAACATGGGCTAGCCTGTCACCAGCAGGCACTCATAGAATTACCGTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATGGGCTAGCCTGTCACCAGCAGGCACTCATAGAATTACCGTGAC  350

seq1  AAGCTAAGGACGCTGCCAATACCTCTGAAGCTTTGTGACCACCATCTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAAGGACGCTGCCAATACCTCTGAAGCTTTGTGACCACCATCTTAT  400

seq1  CCTTCTGTCCAGCCACATTCAGTCCTTGGTCACCTCTTCTTATTGATCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGTCCAGCCACATTCAGTCCTTGGTCACCTCTTCTTATTGATCAT  450

seq1  TTCCCTCGGGGACCTCAAACTTCCCCTTCATCTTCAGTTACTGTGATGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCGGGGACCTCAAACTTCCCCTTCATCTTCAGTTACTGTGATGTG  500

seq1  ACACTCCTCAGCCCCCACTTGCATCCTCTCTTGGGGTGCTCATGGCCCGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCTCAGCCCCCACTTGCATCCTCTCTTGGGGTGCTCATGGCCCGT  550

seq1  CTCTGGCTACTTACAACAAGAAGTCATACACATCCCACACAGCCAGTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCTACTTACAACAAGAAGTCATACACATCCCACACAGCCAGTAGA  600

seq1  CTCCCACAGAAGCTCTTGAGTTTCAAGCCATCCAAGCCTTGCTCATCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACAGAAGCTCTTGAGTTTCAAGCCATCCAAGCCTTGCTCATCTGA  650

seq1  GACAAGATGCCAGAGTTCCTAGCTCTCCCCTCTTAGGCTCCCTCACTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGATGCCAGAGTTCCTAGCTCTCCCCTCTTAGGCTCCCTCACTGCC  700

seq1  ATCTAGCCATCAACTCCCACTGAATGTACCCAGTATTTTGGCTCTTCTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGCCATCAACTCCCACTGAATGTACCCAGTATTTTGGCTCTTCTTA  750

seq1  TTCCAGTTTCCATTGCCTTCAGGAGTCTTTCTTTTGCACTTAAAAGAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTTTCCATTGCCTTCAGGAGTCTTTCTTTTGCACTTAAAAGAGTA  800

seq1  CAGTTACATTCAATGGCAATCCTCTGTCTGGCCTTGGCTCCTATATTACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTACATTCAATGGCAATCCTCTGTCTGGCCTTGGCTCCTATATTACT  850

seq1  TACTTTTCTTACTACTGTGACTAATACCTGACAAAACAACTCATGGGGGA  900
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TACTTTTCTTACTACTGTGACTAATACCTGAC-AAACAACTCATGGGGGA  899

seq1  AAAGGGTTCTTTTGCTCCATGGTTGAGACTTAGCCCATGGAGGGAATGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGTTCTTTTGCTCCATGGTTGAGACTTAGCCCATGGAGGGAATGGA  949

seq1  GGAATTTGTGGCAATGGGAGTGCATGGTTCAGACTCCTTACATCTCAGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGAATTTGTGGCAATGGGAGTGCATGGTTCAGACTCCTTACATCTCAGT-  998

seq1  GACCAAAAGGCAGAGGAAGGGGAACAACGTAGCTCATTCGGTTTTCTCCT  1050
      |||||||| ||||||  | ||||   |||||||||| |||  ||||||||
seq2  GACCAAAA-GCAGAG--ACGGGA--CACGTAGCTCA-TCG--TTTCTCCT  1040

seq1  TTTCTCCCTTA-TTCTGTCTAGACCCCTGTACTGGCTAGTTTTGTGTCAA  1099
      ||||||||||| |||||||||||  ||||||||||||||||    |||||
seq2  TTTCTCCCTTATTTCTGTCTAGA--CCTGTACTGGCTAGTT---GGTCAA  1085

seq1  CTTGACACAGCTGGAGTTATCACAGAGA-AAGGAGCTTCAATTGAGGAAA  1148
      | |||| ||||||||||   |||||||| ||||||| |||| ||||   |
seq2  C-TGAC-CAGCTGGAGT--ACACAGAGAGAAGGAGCCTCAA-TGAG--CA  1128

seq1  TGCCTCCATGAGATCCAACTGTAAGG  1174
      ||||| |||||||| || ||||||||
seq2  TGCCT-CATGAGAT-CACCTGTAAGG  1152

seq1: chr4_151310857_151311411
seq2: B6Ng01-089G13.g_156_403 (reverse)

seq1  ATTTTTTTTCCAAACTATTTGAAGAAAGAATTCCTTGACAACAAATTAGC  50
                                                        
seq2  --------------------------------------------------  0

seq1  ATTAGATTTATTGATTGTTGTCTTTTTATAGATTTTTTTTTCTTTTAGAC  100
                                                        
seq2  --------------------------------------------------  0

seq1  TTGTTTGAGTGCTATGCATGAATGCAAATATATGCGCTGTATGCATTCCT  150
                                                        
seq2  --------------------------------------------------  0

seq1  ATGAATAGTTGTGAGCTATTGGGAGGCGAGGAACTGAACCTCAGTCATGT  200
                                                        
seq2  --------------------------------------------------  0

seq1  GCAAGAACAGCAAGTGTGCTCAACTACTGAGCTATTTCTAAGGCCCTTTT  250
                                                        
seq2  --------------------------------------------------  0

seq1  TATAGAATTCTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTC  300
                             ||||  |||| | ||||||||||||||
seq2  ----------------------ATTTT--TTTTCCAAGACAGGGTTTCTC  26

seq1  TGTGTAGCCCTGGCTGTCCTAGAACTCACTTTGTAAACCAGGCTG-GCCT  349
      ||| ||||||||||||||||  ||| |||||    |  || | || |  |
seq2  TGTATAGCCCTGGCTGTCCTGAAACACACTT----ATACATGATGTGAAT  72

seq1  CGAATTCAGAAATCTGCCTGCCTCTGCCTCCCGAGTGCTAGGA-TTC-CT  397
         ||  |||||                     | | | | || ||| ||
seq2  TACATATAGAAA---------------------AATACAAAGACTTCACT  101

seq1  AAATAATATGGTCTGGTTTCTTCTTTATCACTCTCATGTTACACCCTAAA  447
      ||| |                || |||| | | | | ||           
seq2  AAAAA----------------TCATTATAATTAT-AGGT-----------  123

seq1  GAATTTCTTTTAGC--AGT----GCATTCTGAAGCAGTAAACTTATCATG  491
      |||     ||||||  |||    | || | ||| ||  | ||  | ||  
seq2  GAA-----TTTAGCAAAGTTGCAGGATACAGAATCAACACACACA-CA--  165

seq1  AGTTCAAGACCAGCCAGGTCTACATTAAAACAAA---ACA----AACAAA  534
          ||| || | | |   | |||   |||||||   |||     ||   
seq2  ----CAA-ACAAACAAACAC-ACACACAAACAAATGCACACCCCTACCCT  209

seq1  CACA--AAACCCTG----------------TCTAAAGAA  555
      ||||  ||||||||                 ||||||||
seq2  CACATGAAACCCTGAAGTGTATTTTTTTCTACTAAAGAA  248