BAC Information

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BAC

Clone NameB6Ng01-089I13
Chromosome4 (Build37)
Map Location 80,625,986 - 80,731,119
singlet/doubletdoublet
Overlap genenone
Upstream geneTyrp1, D4Bwg0951e
Downstream geneMpdz, LOC100040131, LOC100040144, EG668895, LOC100040164, EG545641
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089I13.bB6Ng01-089I13.g
ACCDH902088DH902089
length9481,157
definitionDH902088|Mus musculus domesticus DNA, BAC clone: B6Ng01-089I13, 5' end.DH902089|Mus musculus domesticus DNA, BAC clone: B6Ng01-089I13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,730,170 - 80,731,119)(80,625,986 - 80,627,148)
sequence
gaattcatgcaattataacaaataaaaaactgctaaatcaaaacatagtt
gtctttcctgttttctctgtttttctttactctttgttcccctcaacttt
ttatttattgctctaagtcaacagtttttacagttagtttaggaccctgt
gaggatggataccaaactttacagaggctcaagtccctgtgtaaagcagt
atagtattttcatacagcttacccataccttcctgtacactttaatgagt
tatatattttttacaacacctaatatgtcagtactcggtagagaatgtct
atgctacatgctaaggacaaacagcattaaaaggtgtgtgcgttttcagt
acatatcaaaccaggacagatttcacagcccatcacaaggaccagaggca
aggcaaacagtgctccaacacaaagtaaagggcagaggtaggaggcacga
ggggcaggcatctgcagctgggcacttccatcgcacggaatgcatacata
ctgttccatgtttgacaggctcatgatttgatttttttttaatttcaagg
cataaaaaatttgattaacagatggctgaatctgagtaaaaatgcagaac
ctgaagaaatagatggctgaatgttctctttctgtaagtaacagagggtt
gctagtcttgaaatatgtttgctcatttatgtagaaaccaataaagtctc
tattcacacctgaatgtgttctctctctctctctctctctctctctctct
ctctctctctctcaactaatcgtggacagttgtgtatcatctttaataca
gtggaaatttttaaaggttcggtctaaatgttagacgaatactccacttt
tgaattgtgactactgtgatggtaagaatagcacttgggctatgcgattc
tgcatgtgtgtgtgtgtgtgtggggaggatcctctaaggggggacctt
gaattcagcctctttgctataacacagaaaagatagcagcagacaggccc
agaaagtgagccatgctttaattgggcaacacaagcacaaacaagataaa
tggactcttcttatggaactcacacagacccctcagtcaggactgttgaa
ctcacttactttgctgtattatgacccacttgacatttggttgctttgac
aaggctcaccttgcacatatctatggtcctcttctgcgtcttctccctct
tccattttctccttcttctctccctttgaagaggaggaagaagaagaaaa
gcagagcagaaacacatggcctggaaaacccgaaagttttaaggggtctc
atagatgtgggaaatggtagaggagcactaggtctgcccagtctgggtgc
acagcatgtattcatattatttgagttgtgttttcattgccagggcatat
tgggttggagatttactgcaacagtacatacgtttaaatgacaaacaact
ttacatacaaaagtatgcagcagcacaaaatgtaaatattaatgaataat
ataaagggcatgattatttttgtagaacaaagtggtgaggaagaaattga
cactatcaagacttctggaattcttttaagtgtctaacctcttcacaaag
gttatagttacaaaggctttgtttcattttattttgttctgcttttactt
gttttctgttcattgcaatttaaactctgacttaaaagatatatacaatg
aacacaaatgcaaatttgatgaaaagaacgttattatgtgacttttcctg
aggagacacaaacaaatatcaagatatctttacatggctccaacaaaaga
ccaaagaaaaaattctacccaagttgtacttactggttttgtcaacttga
caaaagctggagttatcacagagaaaggagcttcagtaggaggaaatgcc
tacagagatccagctgttgggcattttctcaattagtgatcaagcaggca
ggcccattgtggatgggtgccattttgtagtctgggttctataagaagca
aactgagcaagccaggggaagcaagcagttacatcctccatgacctctgc
atcagctcctgcttcctgaacgtgctgagttcagtcctgcttcccttgtg
gatgaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_80730170_80731119
seq2: B6Ng01-089I13.b_46_993 (reverse)

seq1  AAGGTCCCCACCTTAAAAGTATCC-CCCCACACACACACACACACATGCA  49
      ||||||||| |||| | || |||| |||||||||||||||||||||||||
seq2  AAGGTCCCC-CCTT-AGAGGATCCTCCCCACACACACACACACACATGCA  48

seq1  GAATCGCATAGCCCATGTGCTGTTCTTACCAACACGGTAGTCACAATTCA  99
      ||||||||||||||| ||||| ||||||||| ||| ||||||||||||||
seq2  GAATCGCATAGCCCAAGTGCTATTCTTACCATCACAGTAGTCACAATTCA  98

seq1  AATGTGGAGTATTCGTCAAACATCTAGACCGAACCTTTAAAAATTTCCAC  149
      || |||||||||||||| ||||| ||||||||||||||||||||||||||
seq2  AAAGTGGAGTATTCGTCTAACATTTAGACCGAACCTTTAAAAATTTCCAC  148

seq1  TGTAATTAAAGATGATACATAACTGTCCAGGATTAGTTGAGAGAGAGAGA  199
      ||| ||||||||||||||| ||||||||| ||||||||||||||||||||
seq2  TGT-ATTAAAGATGATACACAACTGTCCACGATTAGTTGAGAGAGAGAGA  197

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACACATTCAGGTGTGAAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACACATTCAGGTGTGAAT  247

seq1  AGAGACTTTATTGGTTTCTACATAAATGAGCAAACATATTTCAAGACTAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTTTATTGGTTTCTACATAAATGAGCAAACATATTTCAAGACTAG  297

seq1  CAACCCTCTGTTACTTACAGAAAGAGAACATTCAGCCATCTATTTCTTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCTCTGTTACTTACAGAAAGAGAACATTCAGCCATCTATTTCTTCA  347

seq1  GGTTCTGCATTTTTACTCAGATTCAGCCATCTGTTAATCAAATTTTTTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGCATTTTTACTCAGATTCAGCCATCTGTTAATCAAATTTTTTAT  397

seq1  GCCTTGAAATTAAAAAAAAATCAAATCATGAGCCTGTCAAACATGGAACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGAAATTAAAAAAAAATCAAATCATGAGCCTGTCAAACATGGAACA  447

seq1  GTATGTATGCATTCCGTGCGATGGAAGTGCCCAGCTGCAGATGCCTGCCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTATGCATTCCGTGCGATGGAAGTGCCCAGCTGCAGATGCCTGCCC  497

seq1  CTCGTGCCTCCTACCTCTGCCCTTTACTTTGTGTTGGAGCACTGTTTGCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTGCCTCCTACCTCTGCCCTTTACTTTGTGTTGGAGCACTGTTTGCC  547

seq1  TTGCCTCTGGTCCTTGTGATGGGCTGTGAAATCTGTCCTGGTTTGATATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTCTGGTCCTTGTGATGGGCTGTGAAATCTGTCCTGGTTTGATATG  597

seq1  TACTGAAAACGCACACACCTTTTAATGCTGTTTGTCCTTAGCATGTAGCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAAAACGCACACACCTTTTAATGCTGTTTGTCCTTAGCATGTAGCA  647

seq1  TAGACATTCTCTACCGAGTACTGACATATTAGGTGTTGTAAAAAATATAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACATTCTCTACCGAGTACTGACATATTAGGTGTTGTAAAAAATATAT  697

seq1  AACTCATTAAAGTGTACAGGAAGGTATGGGTAAGCTGTATGAAAATACTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATTAAAGTGTACAGGAAGGTATGGGTAAGCTGTATGAAAATACTA  747

seq1  TACTGCTTTACACAGGGACTTGAGCCTCTGTAAAGTTTGGTATCCATCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTTTACACAGGGACTTGAGCCTCTGTAAAGTTTGGTATCCATCCT  797

seq1  CACAGGGTCCTAAACTAACTGTAAAAACTGTTGACTTAGAGCAATAAATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGTCCTAAACTAACTGTAAAAACTGTTGACTTAGAGCAATAAATA  847

seq1  AAAAGTTGAGGGGAACAAAGAGTAAAGAAAAACAGAGAAAACAGGAAAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTGAGGGGAACAAAGAGTAAAGAAAAACAGAGAAAACAGGAAAGA  897

seq1  CAACTATGTTTTGATTTAGCAGTTTTTTATTTGTTATAATTGCATGAATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTATGTTTTGATTTAGCAGTTTTTTATTTGTTATAATTGCATGAATT  947

seq1  C  950
      |
seq2  C  948

seq1: chr4_80625986_80627148
seq2: B6Ng01-089I13.g_69_1225

seq1  GAATTCAGCCTCTTTGCTATAACACAGAAAAGATAGCAGCAGACAGGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCTCTTTGCTATAACACAGAAAAGATAGCAGCAGACAGGCCC  50

seq1  AGAAAGTGAGCCATGCTTTAATTGGGCAACACAAGCACAAACAAGATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTGAGCCATGCTTTAATTGGGCAACACAAGCACAAACAAGATAAA  100

seq1  TGGACTCTTCTTATGGAACTCACACAGACCCCTCAGTCAGGACTGTTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTCTTCTTATGGAACTCACACAGACCCCTCAGTCAGGACTGTTGAA  150

seq1  CTCACTTACTTTGCTGTATTATGACCCACTTGACATTTGGTTGCTTTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTACTTTGCTGTATTATGACCCACTTGACATTTGGTTGCTTTGAC  200

seq1  AAGGCTCACCTTGCACATATCTATGGTCCTCTTCTGCGTCTTCTCCCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCACCTTGCACATATCTATGGTCCTCTTCTGCGTCTTCTCCCTCT  250

seq1  TCCATTTTCTCCTTCTTCTCTCCCTTTGAAGAGGAGGAAGAAGAAGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTCTCCTTCTTCTCTCCCTTTGAAGAGGAGGAAGAAGAAGAAAA  300

seq1  GCAGAGCAGAAACACATGGCCTGGAAAACCCGAAAGTTTTAAGGGGTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCAGAAACACATGGCCTGGAAAACCCGAAAGTTTTAAGGGGTCTC  350

seq1  ATAGATGTGGGAAATGGTAGAGGAGCACTAGGTCTGCCCAGTCTGGGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGTGGGAAATGGTAGAGGAGCACTAGGTCTGCCCAGTCTGGGTGC  400

seq1  ACAGCATGTATTCATATTATTTGAGTTGTGTTTTCATTGCCAGGGCATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATGTATTCATATTATTTGAGTTGTGTTTTCATTGCCAGGGCATAT  450

seq1  TGGGTTGGAGATTTACTGCAACAGTACATACGTTTAAATGACAAACAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTGGAGATTTACTGCAACAGTACATACGTTTAAATGACAAACAACT  500

seq1  TTACATACAAAAGTATGCAGCAGCACAAAATGTAAATATTAATGAATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATACAAAAGTATGCAGCAGCACAAAATGTAAATATTAATGAATAAT  550

seq1  ATAAAGGGCATGATTATTTTTGTAGAACAAAGTGGTGAGGAAGAAATTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGGCATGATTATTTTTGTAGAACAAAGTGGTGAGGAAGAAATTGA  600

seq1  CACTATCAAGACTTCTGGAATTCTTTTAAGTGTCTAACCTCTTCACAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATCAAGACTTCTGGAATTCTTTTAAGTGTCTAACCTCTTCACAAAG  650

seq1  GTTATAGTTACAAAGGCTTTGTTTCATTTTATTTTGTTCTGCTTTTACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAGTTACAAAGGCTTTGTTTCATTTTATTTTGTTCTGCTTTTACTT  700

seq1  GTTTTCTGTTCATTGCAATTTAAACTCTGACTTAAAAGATATATACAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTGTTCATTGCAATTTAAACTCTGACTTAAAAGATATATACAATG  750

seq1  AACACAAATGCAAATTTGATGAAAAGAACGTTATTATGTGACTTTTCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAAATGCAAATTTGATGAAAAGAACGTTATTATGTGACTTTTCCTG  800

seq1  AGGAGACACAAACAAATATCAAGATATCTTTACATGGCTCCAACAAAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACACAAACAAATATCAAGATATCTTTACATGGCTCCAACAAAAGA  850

seq1  CCAAAGAAAAAATTCTACCCAAGTTGTACTTACTGGTTTTGTCAACTTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGAAAAAATTCTACCCAAGTTGTACTTACTGGTTTTGTCAACTTGA  900

seq1  CAAAAGCTGGAGTTATCACAGAGAAAGGAGCTTCAGTA-GAGGAAATGCC  949
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CAAAAGCTGGAGTTATCACAGAGAAAGGAGCTTCAGTAGGAGGAAATGCC  950

seq1  TACAAGAGATCCAGCTGTTGGGCATTTTCTCAATTAGTGATCAAGCAGGG  999
      ||| ||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TAC-AGAGATCCAGCTGTTGGGCATTTTCTCAATTAGTGATCAAGCA-GG  998

seq1  CAGGGCCCATTGTGGAT-GGTGCCA-TCTGTAGTCTTGGGTTCTATAAGA  1047
      || |||||||||||||| ||||||| | ||||||| ||||||||||||| 
seq2  CA-GGCCCATTGTGGATGGGTGCCATTTTGTAGTC-TGGGTTCTATAAG-  1045

seq1  AAGCAAACTGAGCAAGCCAGGGGAAGCAAGCCAGTAACATCCCTCCATGA  1097
      |||||||||||||||||||||||||||||| |||| |||| |||||||||
seq2  AAGCAAACTGAGCAAGCCAGGGGAAGCAAG-CAGTTACAT-CCTCCATGA  1093

seq1  CCTCTGCATCAGCTCCTGCTTCCTG-ACCTGCTTGAGTTCCAGTCCTGTC  1146
      ||||||||||||||||||||||||| || ||| |||||| |||||||| |
seq2  CCTCTGCATCAGCTCCTGCTTCCTGAACGTGC-TGAGTT-CAGTCCTG-C  1140

seq1  TTCCTTTGGTGATGAAC  1163
      |||| |||  |||||||
seq2  TTCCCTTGTGGATGAAC  1157