BAC Information

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BAC

Clone NameB6Ng01-089L02
Chromosome4 (Build37)
Map Location 91,719,480 - 91,836,236
singlet/doubletdoublet
Overlap geneLOC664886, 1700011H22Rik
Upstream geneLOC664848, LOC100042274, Elavl2, LOC664864, LOC620016, LOC654475, 4930577H14Rik
Downstream geneLOC68280, LOC620269
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089L02.bB6Ng01-089L02.g
ACCDH902206DH902207
length5471,020
definitionDH902206|Mus musculus domesticus DNA, BAC clone: B6Ng01-089L02, 5' end.DH902207|Mus musculus domesticus DNA, BAC clone: B6Ng01-089L02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,719,480 - 91,720,033)(91,835,205 - 91,836,236)
sequence
aatagtatttctgtcgacttttaatctcattctgctttttttggctgtgt
gtgtgtgagcgtgtgtgtgtgtgtgtgtacttgcgagggtgcatgcacac
aggtgtgtgtttcttattggtctttcacttgtatactttgctttatattt
ttgtgggttttatcttgctgacattgtttgtgtttctagtttttgttttg
aaacaaaaaagaaaatgcatgagcttgggtgggtagggaggtgagggata
tcaaagggattacacagaaaaaagtgtgattagaacatattgcataaaaa
attcaattaggattttaaaaaaggaaaaagatgaaccggatttttttatg
cagtcattgtgaccagattctttccccttccccaaattctccttgatgtt
tttttctccctttctcccttcttctctccttctgtctcactcaaaaagaa
taaaaacaagcataaagaacttgatgatagatttcattttataaatgtaa
ggaaggcaaaatgaactgcaaactttaaattagttaatttaaatgat
gaattccatagttttgtcatccttaatgacataataaggataaacttaaa
tattataagaacaccaagtggatttcttttttttttttttttggtccaag
ccttgatacccactctcaccataaactactattgaaaaagttaacaaatg
gcatgatttctgtctctattagcagttattcctggaaaatattgcatata
aaacaactcgaaattattggtgcaatctctgaaatatacaaaattaagtc
ccatctattatagtcagatagttatttctaaccagttatttttaacatgt
tatgtaacttaaagattggtaaatactaagtagtaattcaccaaagagga
gattcatttaaatataaatgccattcctcaatgtgaacttactgtaaatt
tttgtgttaaagattttttcttttaagcagactaattgaaagttggaaac
aaaaatatcaaatttattacaaagatacccttatttcttcaatataattc
acacaagaggtagctgaaatctaataagctattttgcaacaaggtgacat
gaacagttatctttgttgctgaatatatattccctatgttatatacccag
taatagtatatactcagactgtattatatggtagataagcttctaatttt
taaagagacttcagattcatctccaagctggcttcactagtttacattcc
caccagcagtataaaagagttctcttttctcctacatcaatgccaacatt
tcttattatttatcttctccctggtggcttctctggccagggtcaggtag
aaacttaaagtaattttcatctgtttgaagaacactattcccagctatgt
aaccactggaaagcccaccagatttgatgattacttctaaactcaggatt
acaagaagctctgattaaatttggtgaactcttaatacaccaaatgacaa
tagaaaaagagagctatagtactgttataggcagagggatagaagaggtg
gaaagcagagaagaactaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_91719480_91720033
seq2: B6Ng01-089L02.b_46_598

seq1  GAATTCAATAGTATTTCTGTCGACTTTTAATCTCATTCTGCTTTTTTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAGTATTTCTGTCGACTTTTAATCTCATTCTGCTTTTTTTGG  50

seq1  CTGTGTGTGTGTGAGCGTGTGTGTGTGTGTGTGTACTTGCGAGGGTGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTGTGTGAGCGTGTGTGTGTGTGTGTGTACTTGCGAGGGTGCAT  100

seq1  GCACACAGGTGTGTGTTTCTTATTGGTCTTTCACTTGTATACTTTGCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACAGGTGTGTGTTTCTTATTGGTCTTTCACTTGTATACTTTGCTTT  150

seq1  ATATTTTTGTGGGTTTTATCTTGCTGACATTGTTTGTGTTTCTAGTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTGTGGGTTTTATCTTGCTGACATTGTTTGTGTTTCTAGTTTTT  200

seq1  GTTTTGAAACAAAAAAGAAAATGCATGAGCTTGGGTGGGTAGGGAGGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAAACAAAAAAGAAAATGCATGAGCTTGGGTGGGTAGGGAGGTGA  250

seq1  GGGATATCAAAGGGATTACACAGAAAAAAGTGTGATTAGAACATATTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATATCAAAGGGATTACACAGAAAAAAGTGTGATTAGAACATATTGCA  300

seq1  TAAAAAATTCAATTAGGATTTTAAAAAAGGAAAAAGATGAACCGGATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATTCAATTAGGATTTTAAAAAAGGAAAAAGATGAACCGGATTTT  350

seq1  TTTATGCAGTCATTGTGACCAGATTCTTTCCCCTTCCCCAAATTCTCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCAGTCATTGTGACCAGATTCTTTCCCCTTCCCCAAATTCTCCTT  400

seq1  GATGTTTTTTTCTCCCTTTCTCCCTTCTTCTCTCCTTCTGTCTCACTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTTTTTCTCCCTTTCTCCCTTCTTCTCTCCTTCTGTCTCACTCAA  450

seq1  AAAGAATAAAAACAAGCATAAAGAACTTGATGATAGATTTCATTTAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAAGAATAAAAACAAGCATAAAGAACTTGATGATAGATTTCATTTTATAA  500

seq1  ATGTAAGGAAGGCAAAATGAACTGCAAACTTTAAATTAGTTAATTATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATGTAAGGAAGGCAAAATGAACTGCAAACTTTAAATTAGTTAATT-TAAA  549

seq1  TGAT  554
      ||||
seq2  TGAT  553

seq1: chr4_91835205_91836236
seq2: B6Ng01-089L02.g_70_1089 (reverse)

seq1  TTTATGTTC-TCTCTGCTTTCCACCTTCTTCTATTTCCCTCCTGCCTATA  49
      |||| |||| ||||||||||||||| |||||||  ||||| |||||||||
seq2  TTTA-GTTCTTCTCTGCTTTCCACC-TCTTCTA--TCCCT-CTGCCTATA  45

seq1  ACAGTACCTTATAGCTCTCTTTTTCTATTTGTCATTTTGGGTTGTATTAA  99
      |||||||  |||||||||||||||||| |||||||||   | ||||||||
seq2  ACAGTAC--TATAGCTCTCTTTTTCTA-TTGTCATTT---GGTGTATTAA  89

seq1  GAGTTCACCAAATTTAATCAGAGCTTCCTTGTAATCCTGAGTTTAGAAGT  149
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAGTTCACCAAATTTAATCAGAGCTT-CTTGTAATCCTGAGTTTAGAAGT  138

seq1  AATCATCAAATCTGGTGGGCTTTCCAGTGGTTACATAGCTGGGAATAGTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATCAAATCTGGTGGGCTTTCCAGTGGTTACATAGCTGGGAATAGTG  188

seq1  TTTCTTCAAACAGATGAAAATTACTTTAAGTTTCTACCTGACCCTGGCCA  249
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTCTTCAAACAGATGAAAATTACTTTAAGTTTCTACCTGACCCTGGCCA  237

seq1  GAGAAGCCACCAGGGAGAAGATAAATAATAAGAAATGTTGGCATTGATGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCCACCAGGGAGAAGATAAATAATAAGAAATGTTGGCATTGATGT  287

seq1  AGGAGAAAAGAGAACTCTTTTATACTGCTGGTGGGAATGTAAACTAGTGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAAAGAGAACTCTTTTATACTGCTGGTGGGAATGTAAACTAGTGA  337

seq1  AGCCAGCTTGGAGATGAATCTGAAGTCTCTTTAAAAATTAGAAGCTTATC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCTTGGAGATGAATCTGAAGTCTCTTTAAAAATTAGAAGCTTATC  387

seq1  TACCATATAATACAGTCTGAGTATATACTATTACTGGGTATATAACATAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATATAATACAGTCTGAGTATATACTATTACTGGGTATATAACATAG  437

seq1  GGAATATATATTCAGCAACAAAGATAACTGTTCATGTCACCTTGTTGCAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATATATTCAGCAACAAAGATAACTGTTCATGTCACCTTGTTGCAA  487

seq1  AATAGCTTATTAGATTTCAGCTACCTCTTGTGTGAATTATATTGAAGAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCTTATTAGATTTCAGCTACCTCTTGTGTGAATTATATTGAAGAAA  537

seq1  TAAGGGTATCTTTGTAATAAATTTGATATTTTTGTTTCCAACTTTCAATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGTATCTTTGTAATAAATTTGATATTTTTGTTTCCAACTTTCAATT  587

seq1  AGTCTGCTTAAAAGAAAAAATCTTTAACACAAAAATTTACAGTAAGTTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGCTTAAAAGAAAAAATCTTTAACACAAAAATTTACAGTAAGTTCA  637

seq1  CATTGAGGAATGGCATTTATATTTAAATGAATCTCCTCTTTGGTGAATTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGGAATGGCATTTATATTTAAATGAATCTCCTCTTTGGTGAATTA  687

seq1  CTACTTAGTATTTACCAATCTTTAAGTTACATAACATGTTAAAAATAACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTAGTATTTACCAATCTTTAAGTTACATAACATGTTAAAAATAACT  737

seq1  GGTTAGAAATAACTATCTGACTATAATAGATGGGACTTAATTTTGTATAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGAAATAACTATCTGACTATAATAGATGGGACTTAATTTTGTATAT  787

seq1  TTCAGAGATTGCACCAATAATTTCGAGTTGTTTTATATGCAATATTTTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGATTGCACCAATAATTTCGAGTTGTTTTATATGCAATATTTTCC  837

seq1  AGGAATAACTGCTAATAGAGACAGAAATCATGCCATTTGTTAACTTTTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATAACTGCTAATAGAGACAGAAATCATGCCATTTGTTAACTTTTTC  887

seq1  AATAGTAGTTTATGGTGAGAGTGGGTATCAAGGCTTGGACCAAAAAAAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTAGTTTATGGTGAGAGTGGGTATCAAGGCTTGGACCAAAAAAAAA  937

seq1  AAAAAAAGAAATCCACTTGGTGTTCTTATAATATTTAAGTTTATCCTTAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGAAATCCACTTGGTGTTCTTATAATATTTAAGTTTATCCTTAT  987

seq1  TATGTCATTAAGGATGACAAAACTATGGAATTC  1032
      |||||||||||||||||||||||||||||||||
seq2  TATGTCATTAAGGATGACAAAACTATGGAATTC  1020