BAC Information

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BAC

Clone NameB6Ng01-090E12
Chromosome4 (Build37)
Map Location 15,647,732 - 15,648,867
singlet/doubletsinglet
Overlap geneLOC100040095
Upstream gene1700034K16Rik, Otud6b, LOC100040047, Tmem55a, OTTMUSG00000004551, Efcbp1, Tmem64
Downstream geneLOC633695, Calb1, Decr1, Nbn, Osgin2, Ripk2, LOC667150, LOC383994
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090E12.bB6Ng01-090E12.g
ACCDH902628DH902629
length1,116528
definitionDH902628|Mus musculus domesticus DNA, BAC clone: B6Ng01-090E12, 5' end.DH902629|Mus musculus domesticus DNA, BAC clone: B6Ng01-090E12, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctgttctgcattgatgaattaacagcctgagttctgcccacgga
ggtttgtcatagggctgcaactctgtagtgatttctaccttcaaataatc
tttccaaacactgagaagttaatttattaacaaatgcaatcaatagtgta
ttatattttaatatttacaccatgctaagagtttctaaaaataaaataga
tattactagtattgaaactctaagactatggctgtgtggagaagtttcca
cacagggccctgaactgttgcactcatactagctttagaacggtgttgtg
gtgggggtgagcaacagttcagagaaggaattcttatgtccttatgaatt
attcattcctgtctccagtgcttagtttttagattcataataaacactca
tctcttcattataacattaagctgatctctggccaccactctgatctcac
cttctatacttgctatgtccttccctggaccaatgttatcttggcttctc
ctggtttgtcagctacccagattggtcttgttttaatgactattcaaatt
atcagtattggtgtcttgcaagtatttgggctcctttaaaaaacccttct
cagaaaggctcatatcgctaacactcctgtttgctggaacaatataagtt
ggttttgcttttgtttttttctattcatgcagtgagttctaccataggaa
actcttgaaagcaaaagactcattactgttacaacttcagaaaccaaatg
atatggagattagagtagatgcgcaataaatatttggtaagaatgttaac
tgaataatcatagcaactgtatactgcatttaattaagcaaaaaggaaaa
actctaaataattgtttccctattgaccaccccaatttagtgtatgaagc
catgattgctatcacattctgaaccccagaatgttgaacatggtgtagca
ggacacttctgctcttgaatattttcagttcttttgtgtggtgttgtcaa
gattttaatgattcattattatttgacaatttataggtattttcctcatt
tacattggaatgctatccgaaggtccccatactcccccactcctacaccc
actccacttcttggcc

aagaagttagactccagagaaccaaataactttattaaaaaatgggggaa
tagagctaaacagagaattctcaactgaggaaactcaaatgtctgagaag
cacctggaaatatgttcaacatccttagtcatcagggaaatgcaaaccaa
aacaaccatgagattccacctcataccaatcaaaatgactaagatcaaaa
actcaggtcacaggatggcaagtatgtgggaaaagaggaacactcctcca
ttgctggtgggattttaaactgctatgaccactctggaaatgaatctgaa
ggctcctaagataattgacctagctataccactcttgggcatatacccag
aagatgccccatcatgctacagggcacatgttctactacatccatagcag
ccttatttgtgatagccagaagctggaaacaatccagatatctctcaaca
gaggaatggatacaaaaaatgtggtacatttacacaatgaaatactacat
ttacacatgaattgcatgtatctggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_15647732_15648867
seq2: B6Ng01-090E12.b_48_1163 (reverse)

seq1  GGCCAAGAAGTGGGAGTGGGTGGGTAGGGGAGTGGGGGAGTATGGGGGAC  50
      ||||||||||| |||||||||  |||  |||||||||||||||||||  |
seq2  GGCCAAGAAGT-GGAGTGGGT--GTA--GGAGTGGGGGAGTATGGGGACC  45

seq1  TTTTGGGATAGCATTTAAAATGTAAATGAAGAAAATACCTAATAAAATTG  100
        || |||||||| ||  ||||||||||| |||||||||||   ||||||
seq2  --TTCGGATAGCA-TTCCAATGTAAATGAGGAAAATACCTA--TAAATTG  90

seq1  TACAAAATAATTAATGAATCATTAAAAATCTTGACAACAACAACAACAAA  150
      |   |||||| |||||||||||| |||||||||||||| || |||   ||
seq2  T--CAAATAA-TAATGAATCATT-AAAATCTTGACAAC-ACCACA--CAA  133

seq1  AAGAACTGAAAATATTCAAAGAGCAGAAGTGTTCCTGCTACACCATGTTC  200
      ||||||||||||||||| ||||||||||||| ||||||||||||||||||
seq2  AAGAACTGAAAATATTC-AAGAGCAGAAGTG-TCCTGCTACACCATGTTC  181

seq1  AACATTCTGGGGTTCAGAATGTGATAGCAATCATGGCTTTCATACACTAA  250
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AACATTCTGGGGTTCAGAATGTGATAGCAATCATGGC-TTCATACACTAA  230

seq1  ATTGGGGTGGTCAATAGGGAAACAATTATTTAGAGTTTTTCCTTTTTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGGTGGTCAATAGGGAAACAATTATTTAGAGTTTTTCCTTTTTGCT  280

seq1  TAATTAAATGCAGTATACAGTTGCTATGATTATTCAGTTAACATTCTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAATGCAGTATACAGTTGCTATGATTATTCAGTTAACATTCTTAC  330

seq1  CAAATATTTATTGCGCATCTACTCTAATCTCCATATCATTTGGTTTCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATTTATTGCGCATCTACTCTAATCTCCATATCATTTGGTTTCTGA  380

seq1  AGTTGTAACAGTAATGAGTCTTTTGCTTTCAAGAGTTTCCTATGGTAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTAACAGTAATGAGTCTTTTGCTTTCAAGAGTTTCCTATGGTAGAA  430

seq1  CTCACTGCATGAATAGAAAAAAACAAAAGCAAAACCAACTTATATTGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGCATGAATAGAAAAAAACAAAAGCAAAACCAACTTATATTGTTC  480

seq1  CAGCAAACAGGAGTGTTAGCGATATGAGCCTTTCTGAGAAGGGTTTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAACAGGAGTGTTAGCGATATGAGCCTTTCTGAGAAGGGTTTTTTA  530

seq1  AAGGAGCCCAAATACTTGCAAGACACCAATACTGATAATTTGAATAGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCCCAAATACTTGCAAGACACCAATACTGATAATTTGAATAGTCA  580

seq1  TTAAAACAAGACCAATCTGGGTAGCTGACAAACCAGGAGAAGCCAAGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACAAGACCAATCTGGGTAGCTGACAAACCAGGAGAAGCCAAGATA  630

seq1  ACATTGGTCCAGGGAAGGACATAGCAAGTATAGAAGGTGAGATCAGAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGGTCCAGGGAAGGACATAGCAAGTATAGAAGGTGAGATCAGAGTG  680

seq1  GTGGCCAGAGATCAGCTTAATGTTATAATGAAGAGATGAGTGTTTATTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCAGAGATCAGCTTAATGTTATAATGAAGAGATGAGTGTTTATTAT  730

seq1  GAATCTAAAAACTAAGCACTGGAGACAGGAATGAATAATTCATAAGGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTAAAAACTAAGCACTGGAGACAGGAATGAATAATTCATAAGGACA  780

seq1  TAAGAATTCCTTCTCTGAACTGTTGCTCACCCCCACCACAACACCGTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATTCCTTCTCTGAACTGTTGCTCACCCCCACCACAACACCGTTCT  830

seq1  AAAGCTAGTATGAGTGCAACAGTTCAGGGCCCTGTGTGGAAACTTCTCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAGTATGAGTGCAACAGTTCAGGGCCCTGTGTGGAAACTTCTCCA  880

seq1  CACAGCCATAGTCTTAGAGTTTCAATACTAGTAATATCTATTTTATTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCATAGTCTTAGAGTTTCAATACTAGTAATATCTATTTTATTTTT  930

seq1  AGAAACTCTTAGCATGGTGTAAATATTAAAATATAATACACTATTGATTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTCTTAGCATGGTGTAAATATTAAAATATAATACACTATTGATTG  980

seq1  CATTTGTTAATAAATTAACTTCTCAGTGTTTGGAAAGATTATTTGAAGGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTTAATAAATTAACTTCTCAGTGTTTGGAAAGATTATTTGAAGGT  1030

seq1  AGAAATCACTACAGAGTTGCAGCCCTATGACAAACCTCCGTGGGCAGAAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCACTACAGAGTTGCAGCCCTATGACAAACCTCCGTGGGCAGAAC  1080

seq1  TCAGGCTGTTAATTCATCAATGCAGAACAGGAATTC  1136
      ||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTGTTAATTCATCAATGCAGAACAGGAATTC  1116


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