BAC Information

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BAC

Clone NameB6Ng01-090E22
Chromosome4 (Build37)4 (Build37)
Map Location 145,729,801 - 145,730,826146,994,236 - 146,994,869
singlet/doubletsingletsinglet
Overlap geneLOC433791
Upstream geneVps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790
Downstream geneRex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090E22.bB6Ng01-090E22.g
ACCDH902646DH902647
length1,037637
definitionDH902646|Mus musculus domesticus DNA, BAC clone: B6Ng01-090E22, 5' end.DH902647|Mus musculus domesticus DNA, BAC clone: B6Ng01-090E22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(145,729,801 - 145,730,826)(146,994,236 - 146,994,869)
sequence
gaattcatacaggagagaaaccctacaaatgtagtgaatgtgacaaatcc
tttactgaaaatggctgtttgagaattcatcagagaattcatacaggaga
gaaaccttacaaatgcactgaatgtgacaaatgctttactttcaaaggca
gtctgaggattcatcagagaattcatacaggagagaaaccttacaaatgc
actgaatgtgacaaatcctttactgaaaagggcaaactgagaattcatca
gagaattcatacaggagagaaaccttacaaatgtagtgaatgtgacaaat
gctttactgaataaggacatcagagaattcatacaggagagataccttac
aaatagtttgtatgtgacaaatacaatacaatgtcagtctgagaaatcat
cagtttttaatacagtagagaatatttataaatgaagtgaacgagacaat
cctttaccaagatatatcatcttaaaaatcattagagaatacttacagaa
gagaaacttttcaattatattgaaggtatgaatcctttactcttggccta
tttcctagaatgttaacagtgaatacttacaggatacaaacttaactcat
gcattgtatgaagaaatatttttgacttcatttcaggtcaaagagaatat
ctaataactttttaggggaaagtatttctgttggggaaagtgtggcctgt
gttttattcatgttctattcttgtcaattgaggctccacactagagaatt
agtatgattatgaaaatcatgtgaaaactttcatgcaatgttcaaatctt
aaataatgtcaactattttttgcttgaagaaactctgaaaatgtaaaaat
gtagaaagcttttcatgacacctttttacctgttcacccttaaatgttac
agatgaagacagttgggaagtgaggagatattattgtgtaccacattcat
tgagacagaaataatccatttcaaagaaactatttaagtttttatgcagt
ctcaaaatatctaataaactggtacattctgtataat
gaattcactctgtagacctggctggccttgaactcagaaatccgcctgcc
tctgcctcccaagtgctgggattaaaggcatgcaccaccaccgcctgcct
tactatcacttgctatatcaaatatttttaaagtagacaaaggtcaaata
gctatatgtagtagtcagacaaggccataaccttctcatctgtggggaat
tgcaggctggtctccagtcgagctgaggtctaaacccaggtggtcataat
tcacctacatgacacggtaggcattccctcatgctcctggaactcaggcc
cctgcataaggcacaacctcccacagcccccacaagagaagcatggtcag
tagtcaagtaagcaatggcccaagcttctgaccttcaggctaaactcctc
cccagttacctagcaacagtgaagaccataaaaaggtgtgctcagtcccc
accttgctctctcactcctttgtcctctaacctctcacttctctcttctt
ttccctttctctttgtcttctctctcctttatctttgttctctcctctcc
tctactatccttctcctccctcccctcccctcccctcccctcctctctct
ctctctctctctctctctctctctctctctctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145729801_145730826
seq2: B6Ng01-090E22.b_71_1084 (reverse)

seq1  AATATACAGAATGTTACCAGTTTTATTAGATATTTTGAGGACTGCATTAA  50
      | ||||||||||| |||||| ||||||||||||||||| ||||||||  |
seq2  ATTATACAGAATG-TACCAG-TTTATTAGATATTTTGA-GACTGCAT--A  45

seq1  AGACCTTAAATAGTTTCCTTTTGAAATGGATTATTTCTGTCTCAATGAAT  100
      | | |||||||||||||  |||||||||||||||||||||||||||||||
seq2  AAAACTTAAATAGTTTC--TTTGAAATGGATTATTTCTGTCTCAATGAAT  93

seq1  GTGTTACACAATAATATCTCCTCACTTCCCAACTTGTCTTCATCTTGTAA  150
      ||| ||||||||||||||||||||||||||||| |||||||||| |||||
seq2  GTGGTACACAATAATATCTCCTCACTTCCCAAC-TGTCTTCATC-TGTAA  141

seq1  CATTTAAGGGTGAACAAGTAAAAAGGTATCATGAAAAGCTTTCTACATTT  200
      |||||||||||||||| |||||||||| ||||||||||||||||||||||
seq2  CATTTAAGGGTGAACAGGTAAAAAGGTGTCATGAAAAGCTTTCTACATTT  191

seq1  TTACATTTTCAGAGTTTCTTCAAGCAAAAAATAGTTGACATTATTTAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTTCAGAGTTTCTTCAAGCAAAAAATAGTTGACATTATTTAAGA  241

seq1  TTTGAACATTGCATGAAAGTTTTCACATGATTTTCATAATCATACTAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACATTGCATGAAAGTTTTCACATGATTTTCATAATCATACTAATT  291

seq1  CTCTAGTGTGGAGCCTCAATTGTTGTCAAGAATAGAACGTGAATAAAACA  350
      |||||||||||||||||||   ||| |||||||||||| |||||||||||
seq2  CTCTAGTGTGGAGCCTCAA---TTGACAAGAATAGAACATGAATAAAACA  338

seq1  CAGGCCACACTTTCCCCAACAGAAATACTTTCCCCTAAAAAGTTATTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCACACTTTCCCCAACAGAAATACTTTCCCCTAAAAAGTTATTAGA  388

seq1  TATTCTCTTTGACCTGAAATGAAGTCAAAGATATTTCTTGATACAATGCA  450
      ||||||||||||||||||||||||||||| ||||||||| ||||||||||
seq2  TATTCTCTTTGACCTGAAATGAAGTCAAAAATATTTCTTCATACAATGCA  438

seq1  TGAGTTAAGTTTGTATCCTGTAAGTATTCACTGTTAACATTCTAGGAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTAAGTTTGTATCCTGTAAGTATTCACTGTTAACATTCTAGGAAAT  488

seq1  AGGCCAAGAGTAAAGGATTCATACCTTTGATATAATTGAAAAGTTTCTCT  550
      |||||||||||||||||||||||||||  |||||||||||||||||||||
seq2  AGGCCAAGAGTAAAGGATTCATACCTTCAATATAATTGAAAAGTTTCTCT  538

seq1  TCTGTAAGTATTCTCTAATGATTTTTAAGATGATATATCTTGGTAAAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAGTATTCTCTAATGATTTTTAAGATGATATATCTTGGTAAAGGA  588

seq1  TTGTCTCGTTCACTTCATTTATAAATATTCTCTACTGTATTAAAAACTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCGTTCACTTCATTTATAAATATTCTCTACTGTATTAAAAACTGA  638

seq1  TGATTTCTCAGACTGACATTGTATTGTATTTGTCACATACAAACTATTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCTCAGACTGACATTGTATTGTATTTGTCACATACAAACTATTTG  688

seq1  TAAGGTATCTCTCCTGTATGAATTCTCTGATGGCCTTTTTCAGTAAAGCA  750
      |||||||||||||||||||||||||||||||| |||| ||||||||||||
seq2  TAAGGTATCTCTCCTGTATGAATTCTCTGATGTCCTTATTCAGTAAAGCA  738

seq1  TTTGTCACATTCACTACATTTGTAAGGTTTCTCTCCTGTATGAATTCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCACATTCACTACATTTGTAAGGTTTCTCTCCTGTATGAATTCTCT  788

seq1  GATGAATTCTCAGTTTGCCCTTTTCAGTAAAGGATTTGTCACATTCAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATTCTCAGTTTGCCCTTTTCAGTAAAGGATTTGTCACATTCAGTG  838

seq1  CATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGAATCCTCAGACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGAATCCTCAGACT  888

seq1  GCCTTTGAAAGTAAAGCATTTGTCACATTCAGTGCATTTGTAAGGTTTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGAAAGTAAAGCATTTGTCACATTCAGTGCATTTGTAAGGTTTCT  938

seq1  CTCCTGTATGAATTCTCTGATGAATTCTCAAACAGCCATTTTCAGTAAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTATGAATTCTCTGATGAATTCTCAAACAGCCATTTTCAGTAAAG  988

seq1  GATTTGTCACATTCACTACATTTGTA  1026
      ||||||||||||||||||||||||||
seq2  GATTTGTCACATTCACTACATTTGTA  1014

seq1: chr4_146994236_146994869
seq2: B6Ng01-090E22.g_68_704

seq1  GAATTCACTCTATAGACCTGGCTGGCCTCGAACTCAGGAATCCGCTTGCC  50
      ||||||||||| |||||||||||||||| |||||||| ||||||| ||||
seq2  GAATTCACTCTGTAGACCTGGCTGGCCTTGAACTCAGAAATCCGCCTGCC  50

seq1  TCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCAACACCACCGCCTGGCT  100
      |||||||||||||||||||||||||||||||||| |||||||||||| ||
seq2  TCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCACCACCACCGCCTGCCT  100

seq1  TACTATCACTTGCTATATCAAATATTTTTAAAGTAGACAAAGGTCAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATCACTTGCTATATCAAATATTTTTAAAGTAGACAAAGGTCAAATA  150

seq1  GCTATATGTATTGGTCAGACAAGGCCATAACCTTCTCATCTGTGGGGAAT  200
      |||||||||| | |||||||||||||||||||||||||||||||||||||
seq2  GCTATATGTAGTAGTCAGACAAGGCCATAACCTTCTCATCTGTGGGGAAT  200

seq1  TGCAGGCTGGTCTCCAGTCGAGCTGAGGTCTGAACCCCGATGGTCATAAT  250
      ||||||||||||||||||||||||||||||| ||||| | ||||||||||
seq2  TGCAGGCTGGTCTCCAGTCGAGCTGAGGTCTAAACCCAGGTGGTCATAAT  250

seq1  TCACCTACATGACACAGTAGGCATTCCCTCATGCTCCTGGAACTCAGGCC  300
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCACCTACATGACACGGTAGGCATTCCCTCATGCTCCTGGAACTCAGGCC  300

seq1  CCTGCATAAGGCACAACCTCCCACAGCCCCCACAAGAGAAGCATGGTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATAAGGCACAACCTCCCACAGCCCCCACAAGAGAAGCATGGTCAG  350

seq1  TAGTCAAGTAAGCAATGGCCCAAGCTTCTGACCTTCAGGCTAAACTCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAAGTAAGCAATGGCCCAAGCTTCTGACCTTCAGGCTAAACTCCTC  400

seq1  CCCAGTTACCTAGCAACAGTGAAGACCATAAAAAGGTGTGCTCAGCCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCCAGTTACCTAGCAACAGTGAAGACCATAAAAAGGTGTGCTCAGTCCCC  450

seq1  ACCTTGCTCTCTCTCACTCCTTTGTCCTCTAACCTCTCACTTCTCTCTTC  500
      ||||||  ||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTG--CTCTCTCACTCCTTTGTCCTCTAACCTCTCACTTCTCTCTTC  498

seq1  TTTTCCCTTTCTCTGTCTTCTCTCTCCTCTCTCCTTTATCTTTGTTCTCT  550
      |||||||||||||     | | ||| ||||||||||||||||||||||||
seq2  TTTTCCCTTTCTC-----TTTGTCTTCTCTCTCCTTTATCTTTGTTCTCT  543

seq1  CCTCTCCTCTACTATCCTTCTCCT----------CCCTCCCCTCCTCTTC  590
      ||||||||||||||||||||||||          ||||||||||| || |
seq2  CCTCTCCTCTACTATCCTTCTCCTCCCTCCCCTCCCCTCCCCTCCCCTCC  593

seq1  TCTCTCTCTCTCTCTCTCCCTCTCTCCCTCTCTCTCTCTCTCTC  634
      |||||||||||||||||| ||||||| |||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  637