BAC Information

Click to search

BAC

Clone NameB6Ng01-090J08
Chromosome4 (Build37)
Map Location 66,006,408 - 66,007,544
singlet/doubletsinglet
Overlap geneAstn2
Upstream genePappa, Trim32
Downstream geneLOC667499, Tlr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090J08.bB6Ng01-090J08.g
ACCDH902841DH902842
length1,1521,119
definitionDH902841|Mus musculus domesticus DNA, BAC clone: B6Ng01-090J08, 5' end.DH902842|Mus musculus domesticus DNA, BAC clone: B6Ng01-090J08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagaaaagcacctgagaaaatg
ttcaacatccttaatcatcagagaaatgcaaatccaaacaaacctgagat
tccatctcacaccagtcagaatggctaagatcaaaaattcaggatacagc
agatgctggcaaggatgtggagaaagaggaacactcctccactgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctcgtggttcctca
gaaaattggacatagtactactggagaatccagcaatacctctcctgggc
ctatatccagaagatgttccaattgattagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaaaaacccagat
gccccacaacagaggaatggatacaaaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcataggcaa
atggttggacctggagggcatcatcctgagtgaggtaacacaatcacaaa
ataactcaaatgatatgtactcaccaataagtggatattaacccagaaac
ttagtatagctagatataaggtacaatttgcaaaacacatgaaactgaag
aagaacgaagaccaaagtctggacactttgccccttcttagaattggaaa
caatcacccatggaaggagctacagagacaaagtttggagctgagacaaa
aggatggaccatccaaagactgccatatccaggatccatcccataattag
cctccaaacgatgacaccattgcatacactagcgagcatttgctgcaagg
accatgatatagctgtctcttgtgagactaggccggggcctagcaaacac
agaagtggatgctcacagtcagctattggatagatcacagggccccaatg
gagaagctagagaaagtatccagaactaagagatctgcaaccctgtaggt
gcaacattatgaactaacagtacccagagctcttgactagctgcatatgt
atcaaagatggctagtgcatcactgatgaaaggccattggacaggcaact
ttatatgctcagtaaggaacacaggcaaaatggaatgtgagatatgaagt
cc
gaattctctgttaactcatcccactctacaaagttgaatcctacacttgg
gaatgtgctatgaaggaggtcacagagcaacatctacacacagcctgaaa
gaggtgggaaacgtctgacaagcagactggagactcctagcccagggcct
ttctgcccaggagcacaagctgtctttttccttgactgagattagatgtt
tgcctggtgtctttgcatcatcagaatgtgccagatgctcctgggagggt
ctgtcagacaaactcttagaaatgttttcttcaatatttgtgatttctat
ttttttttcttttttcttttttttttcttttttctttttttttttttttt
tgagtacatatgaaggttgaactccctaacctatttttcacaggatggtt
tatatgtaggtcagaagcagaaatggtgaatgacattggtgggccaggac
attgacccatcagtgacaactctccagagttcccctttttcctctcccat
gtgatctggccatatttggattgtcattgtcccattcatttgcatcatgg
aaagactgcaatgagttgaggcccacaccagcctcagaatccgattgatt
attgaaagagaaagtatccttgtttaattcctggttttgagttgtgtcag
aagctggctatagctaatgctaacagagacaaagctgagacagaagcagg
gtgattgcagtgactgtggtctgaatgttcgcatacccctagtttatctg
ttataacctaatctccagtgtggttatattaagagatgtgccctttggga
aatgtaaagaatgaatgtataaattattaaccactcaggagtgggataaa
tgcccagtaaaagcatcacattgagggagcttgtttgctctgcccttgct
actacaggagatgcagcagagacactacctatgagattgtgtgtcttaca
gactcaaattggtagctatacactaactatcttcttgagctatgaacaat
aattctacattatttatattttatacagccaaggcattttgtacagtgac
ctactcgaataatacacacccacatttaagggaaaggttatttattttat
tagggtgtttgtgtgtcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_66006408_66007544
seq2: B6Ng01-090J08.g_68_1186 (reverse)

seq1  TGGACACACAAACACCCATAAATATAAATAAATAAATCTTTTCCTTTAAA  50
      |||||||||||||||||   |||| ||||||||||  | ||||| |||||
seq2  TGGACACACAAACACCC--TAATA-AAATAAATAA--CCTTTCCCTTAAA  45

seq1  TGTGGGTGTTGTATTAATCTGAGTAGGTCACTGTAACAAAATGCCTTTGG  100
      |||||||| ||||||| || |||||||||||||| |||||||||| ||||
seq2  TGTGGGTG-TGTATTATTC-GAGTAGGTCACTGT-ACAAAATGCC-TTGG  91

seq1  CTGTATAAAATATAAATAATGTAGAATTATTGTTCATAGCTCAAGAAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATAAAATATAAATAATGTAGAATTATTGTTCATAGCTCAAGAAGAT  141

seq1  AAGTTTAGTGTATAGCTACCAATTTTGAGTCTGGTAAGGACACACAATCT  200
      |   |||||||||||||||||| ||||||||| |||| ||||||||||||
seq2  A--GTTAGTGTATAGCTACCAA-TTTGAGTCT-GTAA-GACACACAATCT  186

seq1  CATAGGTAGTGTCTTCTTGCTGCATCTCCTTGTAGTAGCAAGGGCAGAGC  250
      ||||||||||||||   |||||||||||| ||||||||||||||||||||
seq2  CATAGGTAGTGTCT--CTGCTGCATCTCC-TGTAGTAGCAAGGGCAGAGC  233

seq1  AAACAAGCTCCCTCAATGTGATGCTTTTTACTGGGCATTTATCCCACTCC  300
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAACAAGCTCCCTCAATGTGATGC-TTTTACTGGGCATTTATCCCACTCC  282

seq1  TGAGTGGTTAATAATTTATACATTCATTCTTTACATTTCCCAAAGGGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGGTTAATAATTTATACATTCATTCTTTACATTTCCCAAAGGGCAC  332

seq1  ATCTCTTAATATAACCACACTGGAGATTAGGTTATAACAGATAAACTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTAATATAACCACACTGGAGATTAGGTTATAACAGATAAACTAGG  382

seq1  GGTATGCGAACATTCAGACCACAGTCACTGCAATCACCCTGCTTCTGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGCGAACATTCAGACCACAGTCACTGCAATCACCCTGCTTCTGTCT  432

seq1  CAGCTTTGTCTCTGTTAGCATTAGCTATAGCCAGCTTCTGACACAACTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTGTCTCTGTTAGCATTAGCTATAGCCAGCTTCTGACACAACTCA  482

seq1  AAACCAGGAATTAAACAAGGATACTTTCTCTTTCAATAATCAATCGGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGGAATTAAACAAGGATACTTTCTCTTTCAATAATCAATCGGATT  532

seq1  CTGAGGCTGGTGTGGGCCTCAACTCATTGCAGTCTTTCCATGATGCAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCTGGTGTGGGCCTCAACTCATTGCAGTCTTTCCATGATGCAAAT  582

seq1  GAATGGGACAATGACAATCCAAATATGGCCAGATCACATGGGAGAGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGGACAATGACAATCCAAATATGGCCAGATCACATGGGAGAGGAAA  632

seq1  AAGGGGAACTCTGGAGAGTTGTCACTGATGGGTCAATGTCCTGGCCCACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGAACTCTGGAGAGTTGTCACTGATGGGTCAATGTCCTGGCCCACC  682

seq1  AATGTCATTCACCATTTCTGCTTCTGACCTACATATAAACCATCCTGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCATTCACCATTTCTGCTTCTGACCTACATATAAACCATCCTGTGA  732

seq1  AAAATAGGTTAGGGAGTTCAACCTTCATATGTACTCAAAAAAAAAAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGGTTAGGGAGTTCAACCTTCATATGTACTCAAAAAAAAAAAAAA  782

seq1  AAAGAAAAAAGAAAAAAAAAAGAAAAAAGAAAAAAAAATAGAAATCACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAAAGAAAAAAAAAAGAAAAAAGAAAAAAAAATAGAAATCACAA  832

seq1  ATATTGAAGAAAACATTTCTAAGAGTTTGTCTGACAGACCCTCCCAGGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGAAGAAAACATTTCTAAGAGTTTGTCTGACAGACCCTCCCAGGAG  882

seq1  CATCTGGCACATTCTGATGATGCAAAGACACCAGGCAAACATCTAATCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGCACATTCTGATGATGCAAAGACACCAGGCAAACATCTAATCTC  932

seq1  AGTCAAGGAAAAAGACAGCTTGTGCTCCTGGGCAGAAAGGCCCTGGGCTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGGAAAAAGACAGCTTGTGCTCCTGGGCAGAAAGGCCCTGGGCTA  982

seq1  GGAGTCTCCAGTCTGCTTGTCAGACGTTTCCCACCTCTTTCAGGCTGTGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCTCCAGTCTGCTTGTCAGACGTTTCCCACCTCTTTCAGGCTGTGT  1032

seq1  GTAGATGTTGCTCTGTGACCTCCTTCATAGCACATTCCCAAGTGTAGGAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATGTTGCTCTGTGACCTCCTTCATAGCACATTCCCAAGTGTAGGAT  1082

seq1  TCAACTTTGTAGAGTGGGATGAGTTAACAGAGAATTC  1137
      |||||||||||||||||||||||||||||||||||||
seq2  TCAACTTTGTAGAGTGGGATGAGTTAACAGAGAATTC  1119