BAC Information

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BAC

Clone NameB6Ng01-090J10
Chromosome4 (Build37)
Map Location 45,005,134 - 45,171,566
singlet/doubletdoublet
Overlap geneZbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik
Upstream geneClta, Gne, LOC100040313, OTTMUSG00000007209, Rnf38, Melk, Pax5, 5730488B01Rik, LOC545618, Zcchc7, D4Wsu132e, Grhpr
Downstream geneFrmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32, Mcart1, Shb, LOC100040140, LOC100040557, Gm829, LOC100040567, LOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik, Tdrd7, Tmod1, BC057893, AU014645
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090J10.bB6Ng01-090J10.g
ACCDH902845DH902846
length1,1261,181
definitionDH902845|Mus musculus domesticus DNA, BAC clone: B6Ng01-090J10, 5' end.DH902846|Mus musculus domesticus DNA, BAC clone: B6Ng01-090J10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,170,446 - 45,171,566)(45,005,134 - 45,006,320)
sequence
gaattcactgtgtgaacacagatgagaggaaaatcggtctgatgccaccc
tgaccgggatcatctgcagaccccctgaatctaaagtttcctgatgaatt
gcctgtgctgcagcctgacccatcggtcctaagtggcacatggaccagtt
gtcttctccaggaagcccaagagtactgagcggcaaggctcctgtcccag
agtccttctgcccttccatcagcgcacactgattggggtttggggggtta
tcaggaaaggttccagagttgccatgctctggactcagaacccaatggca
gagtcctaaggggcaggagcaggacatataaagaatgcttcctgtgatgg
tttctgtatgctttgtccagggggtaggactattaggaggtgtggcccta
ttggagtaggtgtgtcactgtggccattggctttaagaccctcatcctag
ctgtctggaagccagtcttccattagcagcctccaggtgaagatatagaa
ctctcagctcaacctatgccatgcctgcctggatgttgccatgctcctgc
cttgatgataatggactgaacctctgaacctgtaagccagccccaattaa
atgttgtcctttataaaacttgcactggtcatggtgtctgttcacagcag
taaagccctaagacacttccttagcgacagcagaaacttcagcaggggga
gcctccctcaccagagccagcgaggccaggctttggttttgttctttggg
tctcagtggtccctcctcctctgtgttctgagccaccatgttggtcctgt
ctgctctgactcccgggcttttccctaccactagctcttccttgcctgtg
agctcttctcggatctggcatttccgatctgggggttgtagtcccatctg
cacaggcctcaggcctagcttggctcacccctgtgaaatttgcactagct
ttagaatgttcctgagagcactcctggatcttaaagggttgtggaacagc
taaagccatctgtaaagtctcttttcaaactcaagactgttcaggcctat
tagaatggctcagctagttaaggcttgctgccaagcctgacaccctacct
gtggtggggcatgataggtagtcacc
gaattctatgctgtaggctgcctgactcttccagagcctgtgaagaactg
aggagacatgaacactcctacagttaagtctgattcaacactgagttaga
ggagggacaccactgaacactgaggtgtagctgtgagagcgtatgcaaca
ggaagaaaactacagcagcgctgctgtggttagtctaactggctacgcca
ggagaggtgttctatggcgcttgggagtgagacgtgacaaggtcaagggc
agctgatcttgggtggccttgggcatccagatggcatgaaaggcaaatgc
gccgtgagaacccatacacaggactccgtatcaccagaggaaagacggac
actagcttcccacttacatcaaacaagtacagtatcagaaatacacgttg
gttaaaaccctgctaacacagcacgaacagaaacacctcactgtcactcc
tacaagtacacactccattacaactttagttcttaaaacaaacagaaaag
ttactaaaaacacctatgccatagagatgtattcgaaagtctatacacct
gttagtccaagggcatatttccctggactcagtgtgagcaccatcagagg
gcagtgcctgtgactgcaactcagatacaaataaaaactccacaggactt
tcagaggcctgggactagctcaggatacactttaagcatctgtgccagac
atgcttgtcctccagggcctttttttttttttttccagatagcaccaagt
cacctggttacacacagtatgttctgcattgctgtacagggatggaatac
tcccatcacagggatacaggacatttaattaaatgcttcacagagcttta
aaatagtgttaaaatgtttttctgcactttcatttttaaatttgatattc
ttaacaacaatgacaatcctactttaggactgcatttcctccaccctaag
gatggtgcaagggtaggtgctacacctaacagtctctgcttactcttggg
ctgaaattcatgagagccactggacagtgagacgagtcagtgacagagct
gcctgctacagcggttttagttcagtgcagactgcctgggcctgtggcga
gaagcgaatcaagcaaggtgctgggggaggttgctgctctggtcaggcag
cagtcgttttccaaggttatagtggctggac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_45170446_45171566
seq2: B6Ng01-090J10.b_45_1170 (reverse)

seq1  GGTGACTACATACCATGCCACA-CACAGGTAGGTTGTCAGGCTTGGCAGC  49
      ||||||||| || |||||| || |||||||||| ||||||||||||||||
seq2  GGTGACTACCTATCATGCCCCACCACAGGTAGGGTGTCAGGCTTGGCAGC  50

seq1  AAGCCTTTACCTGCTGAGCCA-TCTTATAGGCCCTGACAGTC-TGGGTTT  97
      ||||||| ||  ||||||||| ||| |||||||   |||||| || ||||
seq2  AAGCCTTAACTAGCTGAGCCATTCTAATAGGCCTGAACAGTCTTGAGTTT  100

seq1  GAAAAGAGACTTTACCAGATGGCTTTAGCTGTT-CACAACCCTCTAAGGA  146
      |||||||||||||| |||||||||||||||||| ||||||||| ||| ||
seq2  GAAAAGAGACTTTA-CAGATGGCTTTAGCTGTTCCACAACCCTTTAA-GA  148

seq1  TCCAGGAGTGCTCTCAGGAACA-TCTAAAGCTAGTGCAAATATCACAGGG  195
      |||||||||||||||||||||| |||||||||||||||||| ||||||||
seq2  TCCAGGAGTGCTCTCAGGAACATTCTAAAGCTAGTGCAAATTTCACAGGG  198

seq1  GTGAGCCAAGCTAGGCCTGAGGCCTGTGCAGATGGGACTACAAACCCCAG  245
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTGAGCCAAGCTAGGCCTGAGGCCTGTGCAGATGGGACTACAACCCCCAG  248

seq1  ATCGGAAATGCCAGATCCGAGAAGAGCTCACAGGCAAGGAAGAGCTAGTG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGAAATGCCAGATCCGAGAAGAGCTCACAGGCAAGGAAGAGCTAGTG  298

seq1  GTAGGGAAAAGCCCGGGAGTCAGAGCAGACAGGACCAACATGGTGGCTCA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGAAAAGCCCGGGAGTCAGAGCAGACAGGACCAACATGGTGGCTCA  348

seq1  GAACACAGAGG-GGAGGGACCACCTGAGACCC-AAGAAC-AGACCAAAGC  392
      ||||||||||| |||||||||| ||||||||| |||||| | ||||||||
seq2  GAACACAGAGGAGGAGGGACCA-CTGAGACCCAAAGAACAAAACCAAAGC  397

seq1  CTGGCCTCGCTGGCTCTGGTGAGGGAGGCTCCCCCTGCTGAAGTTTCTGC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTCGCTGGCTCTGGTGAGGGAGGCTCCCCCTGCTGAAGTTTCTGC  447

seq1  TGTCGCTAAGGAAGTGTCTTAGGGCTTTACTGCTGTGAACAGACACCATG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGCTAAGGAAGTGTCTTAGGGCTTTACTGCTGTGAACAGACACCATG  497

seq1  ACCAGTGCAAGTTTTATAAAGGACAACATTTAATTGGGGCTGGCTTACAG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGCAAGTTTTATAAAGGACAACATTTAATTGGGGCTGGCTTACAG  547

seq1  GTTCAGAGGTTCAGTCCATTATCATCAAGGCAGGAGCATGGCAACATCCA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGAGGTTCAGTCCATTATCATCAAGGCAGGAGCATGGCAACATCCA  597

seq1  GGCAGGCATGGCATAGGTTGAGCTGAGAGTTCTATATCTTCACCTGGAGG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCATGGCATAGGTTGAGCTGAGAGTTCTATATCTTCACCTGGAGG  647

seq1  CTGCTAATGGAAGACTGGCTTCCAGACAGCTAGGATGAGGGTCTTAAAGC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAATGGAAGACTGGCTTCCAGACAGCTAGGATGAGGGTCTTAAAGC  697

seq1  CAATGGCCACAGTGACACACCTACTCCAATAGGGCCACACCTCCTAATAG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGCCACAGTGACACACCTACTCCAATAGGGCCACACCTCCTAATAG  747

seq1  TCCTACCCCCTGGACAAAGCATACAGAAACCATCACAGGAAGCATTCTTT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACCCCCTGGACAAAGCATACAGAAACCATCACAGGAAGCATTCTTT  797

seq1  ATATGTCCTGCTCCTGCCCCTTAGGACTCTGCCATTGGGTTCTGAGTCCA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTCCTGCTCCTGCCCCTTAGGACTCTGCCATTGGGTTCTGAGTCCA  847

seq1  GAGCATGGCAACTCTGGAACCTTTCCTGATAACCCCCCAAACCCCAATCA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATGGCAACTCTGGAACCTTTCCTGATAACCCCCCAAACCCCAATCA  897

seq1  GTGTGCGCTGATGGAAGGGCAGAAGGACTCTGGGACAGGAGCCTTGCCGC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCGCTGATGGAAGGGCAGAAGGACTCTGGGACAGGAGCCTTGCCGC  947

seq1  TCAGTACTCTTGGGCTTCCTGGAGAAGACAACTGGTCCATGTGCCACTTA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTACTCTTGGGCTTCCTGGAGAAGACAACTGGTCCATGTGCCACTTA  997

seq1  GGACCGATGGGTCAGGCTGCAGCACAGGCAATTCATCAGGAAACTTTAGA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCGATGGGTCAGGCTGCAGCACAGGCAATTCATCAGGAAACTTTAGA  1047

seq1  TTCAGGGGGTCTGCAGATGATCCCGGTCAGGGTGGCATCAGACCGATTTT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGGGTCTGCAGATGATCCCGGTCAGGGTGGCATCAGACCGATTTT  1097

seq1  CCTCTCATCTGTGTTCACACAGTGAATTC  1121
      |||||||||||||||||||||||||||||
seq2  CCTCTCATCTGTGTTCACACAGTGAATTC  1126

seq1: chr4_45005134_45006320
seq2: B6Ng01-090J10.g_70_1250

seq1  GAATTCTATGCTGTAGGCTGCCTGACTCTTCCAGAGCCTGTGAAGAACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGCTGTAGGCTGCCTGACTCTTCCAGAGCCTGTGAAGAACTG  50

seq1  AGGAGACATGAACACTCCTACAGTTAAGTCTGATTCAACACTGAGTTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACATGAACACTCCTACAGTTAAGTCTGATTCAACACTGAGTTAGA  100

seq1  GGAGGGACACCACTGAACACTGAGGTGTAGCTGTGAGAGCGTATGCAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGACACCACTGAACACTGAGGTGTAGCTGTGAGAGCGTATGCAACA  150

seq1  GGAAGAAAACTACAGCAGCGCTGCTGTGGTTAGTCTAACTGGCTACGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAAACTACAGCAGCGCTGCTGTGGTTAGTCTAACTGGCTACGCCA  200

seq1  GGAGAGGTGTTCTATGGCGCTTGGGAGTGAGACGTGACAAGGTCAAGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGTGTTCTATGGCGCTTGGGAGTGAGACGTGACAAGGTCAAGGGC  250

seq1  AGCTGATCTTGGGTGGCCTTGGGCATCCAGATGGCATGAAAGGCAAATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATCTTGGGTGGCCTTGGGCATCCAGATGGCATGAAAGGCAAATGC  300

seq1  GCCGTGAGAACCCATACACAGGACTCCGTATCACCAGAGGAAAGACGGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTGAGAACCCATACACAGGACTCCGTATCACCAGAGGAAAGACGGAC  350

seq1  ACTAGCTTCCCACTTACATCAAACAAGTACAGTATCAGAAATACACGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCTTCCCACTTACATCAAACAAGTACAGTATCAGAAATACACGTTG  400

seq1  GTTAAAACCCTGCTAACACAGCACGAACAGAAACACCTCACTGTCACTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAACCCTGCTAACACAGCACGAACAGAAACACCTCACTGTCACTCC  450

seq1  TACAAGTACACACTCCATTACAACTTTAGTTCTTAAAACAAACAGAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGTACACACTCCATTACAACTTTAGTTCTTAAAACAAACAGAAAAG  500

seq1  TTACTAAAAACACCTATGCCATAGAGATGTATTCGAAAGTCTATACACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAAAAACACCTATGCCATAGAGATGTATTCGAAAGTCTATACACCT  550

seq1  GTTAGTCCAAGGGCATATTTCCCTGGACTCAGTGTGAGCACCATCAGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTCCAAGGGCATATTTCCCTGGACTCAGTGTGAGCACCATCAGAGG  600

seq1  GCAGTGCCTGTGACTGCAACTCAGATACAAATAAAAACTCCACAGGACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGCCTGTGACTGCAACTCAGATACAAATAAAAACTCCACAGGACTT  650

seq1  TCAGAGGCCTGGGACTAGCTCAGGATACACTTTAAGCATCTGTGCCAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGCCTGGGACTAGCTCAGGATACACTTTAAGCATCTGTGCCAGAC  700

seq1  ATGCTTGTCCTCCAGGGCC-TTTTTTTTTTTTTTCCAGATAGCACCAAGT  749
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATGCTTGTCCTCCAGGGCCTTTTTTTTTTTTTTTCCAGATAGCACCAAGT  750

seq1  CACCTGGTTACACACAGTATGTTCTGCATTGCTGTACAGGGATGGAATAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGGTTACACACAGTATGTTCTGCATTGCTGTACAGGGATGGAATAC  800

seq1  TCCCATCACA-GGATACAGGACATTTAATTAAATGCTTCACAGAGCTTTA  848
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCCCATCACAGGGATACAGGACATTTAATTAAATGCTTCACAGAGCTTTA  850

seq1  AAATAGTGTTAAAATG-TTTTCTGCACTTTCATTTTTAAATTTGATATTC  897
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAATAGTGTTAAAATGTTTTTCTGCACTTTCATTTTTAAATTTGATATTC  900

seq1  TTAACAACAATGACAA-CCTACTTTAGGACTGCA-TTCCTCCACCCTAAG  945
      |||||||||||||||| ||||||||||||||||| |||||||||||||||
seq2  TTAACAACAATGACAATCCTACTTTAGGACTGCATTTCCTCCACCCTAAG  950

seq1  AAATGTGC-AGGGTAAGTGCTACACCTAACAGTTCTCTGCTTACTCTT-G  993
       |  |||| |||||| |||||||||||||||| ||||||||||||||| |
seq2  GATGGTGCAAGGGTAGGTGCTACACCTAACAG-TCTCTGCTTACTCTTGG  999

seq1  GCTGAAATTCATGAGAGCCACTGGACAGTGAGACCGAGTCCAGTGACAAG  1043
      ||||||||||||||||||||||||||||||||| ||||| ||||||| ||
seq2  GCTGAAATTCATGAGAGCCACTGGACAGTGAGA-CGAGT-CAGTGAC-AG  1046

seq1  AGCTGCCTGCCTACAGCGGTTTTAGTTTCAGTGCAGACTGGCCTGTGCGC  1093
      ||||||||| ||||||||||||||| ||||||||||||| ||||| || |
seq2  AGCTGCCTG-CTACAGCGGTTTTAG-TTCAGTGCAGACT-GCCTGGGC-C  1092

seq1  TGTGGCGAGAAGCG-ATCAGAGCAGGGTGCT-GGGGAGGTTGCTGCTCTG  1141
      |||||||||||||| |||| |||| |||||| ||||||||||||||||| 
seq2  TGTGGCGAGAAGCGAATCA-AGCAAGGTGCTGGGGGAGGTTGCTGCTCT-  1140

seq1  CCAGCGCAGGCAG--GTCGTTTTCGAGTGTTTATATAGGTGGCTGGAC  1187
         |  |||||||  ||||||||| |  ||   |||| ||||||||||
seq2  ---GGTCAGGCAGCAGTCGTTTTCCAAGGT---TATA-GTGGCTGGAC  1181