BAC Information

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BAC

Clone NameB6Ng01-090M23
Chromosome9 (Build37)4 (Build37)
Map Location 66,556,658 - 66,557,66585,740,597 - 85,740,673
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfp609, LOC100041180, Trip4, 2810417H13Rik, Csnk1g1, Ppib, Snx22, Snx1, 5730536A07Rik, Dapk2, Herc1, Fbxl22, Usp3
Downstream geneCar12, Aph1b, LOC623488, Aph1c, Rab8b, Rps27l, Lactb, Tpm1, Tln2, LOC100041390, LOC100040253, EG640799
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090M23.bB6Ng01-090M23.g
ACCDH903013DH903014
length981146
definitionDH903013|Mus musculus domesticus DNA, BAC clone: B6Ng01-090M23, 5' end.DH903014|Mus musculus domesticus DNA, BAC clone: B6Ng01-090M23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(66,556,658 - 66,557,665)(85,740,597 - 85,740,673)
sequence
gaattctcctttgtatggagccgaagaaagggctgtgtggagggaaacta
acatcgattgattgtctgctgtttgcgtgacagtgtgtggctctttgttc
ttaaaatcaccggtggggtaggtagcattaggttttgggaatctgaggct
tgaagatcaatcctttcttaacacagattcacaagactatattcttgatc
cagataattctatctcaagaccaaggcaggcttttctatgtctatcccac
caatgcttcaaatggagttgttttagtttcggattcctcagagatgtgat
ttttctgattttctagatggtgtagttctgtattttctgataagaggcaa
ggtgtgtccatcccaacgatctattctcagtagaggacgaggttgtgcct
ccctcgccaagccccataggcagagatgtagacggagtgcccctcgatga
acacagcgttggatggaatgcgatagagggaacttgagacctcagggctc
tgactccacagttctccagcgaagggggagaacatgagctctctgcacag
ctacttgttctgttaatgagctgtgcttcaaccagaaaagaaggtgggga
ggaagacaaaggagagggatggggcaggaagaaagaagaaggaaaaaaga
ctaagctggctctcactgggcagacttctatgtccaaacttgtgcaggct
cattgatggggatgtgaaaacgcagcgagttttacagctttcttcatgcc
atgcagcgagggcatggattcataacctctgtgtgaactgcagctctact
ctgctcagtttcagcaggatcagtaagaggacagtgtgaccggaggaaac
agtgccaaactctggctctgcaggacagccctagactcacagctctcacc
tgtgtatgctctgtttctgactctagtgaccagatgtctacccctacagt
tgggccatatgtgtgaaagtgcttgaaaaaa
catcaaaaaacactaaactggaagccatgctatacaggcaaaagacctac
agaagagagaagagaggagagaggagagagtagagaggagagaggagaga
ggagagaggaaagagaggagagagagaggagagagagaggagagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_66556658_66557665
seq2: B6Ng01-090M23.b_47_1027 (reverse)

seq1  TTTTTTCCAAAGCACTTTCACACATATGGGCCCAAACCTGTAGGGGGTTA  50
      |||||||  |||||||||||||||||| |||||||  |||||||||  ||
seq2  TTTTTTC--AAGCACTTTCACACATAT-GGCCCAA--CTGTAGGGG--TA  43

seq1  GACATTCTTGTTCCAACTAAGAGGTCAGAAAACAGAGGCATACACAGGGT  100
      |||| ||| ||    ||| ||| ||||| ||||||| ||||||||| |||
seq2  GACA-TCTGGT---CACT-AGA-GTCAG-AAACAGA-GCATACACA-GGT  84

seq1  GAGAGGCTTGTGAAGGTTCTAGGGCTGGTTCCTGGCAGAGCCAGGAGTTT  150
      |||||   |||||    ||||||||||  |||| ||||||||| ||||||
seq2  GAGAG--CTGTGA---GTCTAGGGCTG--TCCT-GCAGAGCCA-GAGTTT  125

seq1  GGCACTGTTTCCTCCGGGTCACACTGTCCTCTTACTGATCCTGCCTGAAA  200
      ||||||||||||||| ||||||||||||||||||||||||||| ||||||
seq2  GGCACTGTTTCCTCC-GGTCACACTGTCCTCTTACTGATCCTG-CTGAAA  173

seq1  CTGAGCAGAGTAGAGCTGCAGTTCACACAGAGGTTATGAATCCATGCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCAGAGTAGAGCTGCAGTTCACACAGAGGTTATGAATCCATGCCCT  223

seq1  CGCTGCATGGCATGAAGAAAGCTGTAAAACTCGCTGCGTTTTCACATCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGCATGGCATGAAGAAAGCTGTAAAACTCGCTGCGTTTTCACATCCC  273

seq1  CATCAATGAGCCTGCACAAGTTTGGACATAGAAGTCTGCCCAGTGAGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATGAGCCTGCACAAGTTTGGACATAGAAGTCTGCCCAGTGAGAGC  323

seq1  CAGCTTAGTCTTTTTTCCTTCTTCTTTCTTCCTGCCCCATCCCTCTCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTAGTCTTTTTTCCTTCTTCTTTCTTCCTGCCCCATCCCTCTCCTT  373

seq1  TGTCTTCCTCCCCACCTTCTTTTCTGGTTGAAGCACAGCTCATTAACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCCTCCCCACCTTCTTTTCTGGTTGAAGCACAGCTCATTAACAGA  423

seq1  ACAAGTAGCTGTGCAGAGAGCTCATGTTCTCCCCCTTCGCTGGAGAACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTAGCTGTGCAGAGAGCTCATGTTCTCCCCCTTCGCTGGAGAACTG  473

seq1  TGGAGTCAGAGCCCTGAGGTCTCAAGTTCCCTCTATCGCATTCCATCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCAGAGCCCTGAGGTCTCAAGTTCCCTCTATCGCATTCCATCCAA  523

seq1  CGCTGTGTTCATCGAGGGGCACTCCGTCTACATCTCTGCCTATGGGGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGTGTTCATCGAGGGGCACTCCGTCTACATCTCTGCCTATGGGGCTT  573

seq1  GGCGAGGGAGGCACAACCTCGTCCTCTACTGAGAATAGATCGTTGGGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAGGGAGGCACAACCTCGTCCTCTACTGAGAATAGATCGTTGGGATG  623

seq1  GACACACCTTGCCTCTTATCAGAAAATACAGAACTACACCATCTAGAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACCTTGCCTCTTATCAGAAAATACAGAACTACACCATCTAGAAAA  673

seq1  TCAGAAAAATCACATCTCTGAGGAATCCGAAACTAAAACAACTCCATTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAAATCACATCTCTGAGGAATCCGAAACTAAAACAACTCCATTTG  723

seq1  AAGCATTGGTGGGATAGACATAGAAAAGCCTGCCTTGGTCTTGAGATAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTGGTGGGATAGACATAGAAAAGCCTGCCTTGGTCTTGAGATAGA  773

seq1  ATTATCTGGATCAAGAATATAGTCTTGTGAATCTGTGTTAAGAAAGGATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTGGATCAAGAATATAGTCTTGTGAATCTGTGTTAAGAAAGGATT  823

seq1  GATCTTCAAGCCTCAGATTCCCAAAACCTAATGCTACCTACCCCACCGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTCAAGCCTCAGATTCCCAAAACCTAATGCTACCTACCCCACCGGT  873

seq1  GATTTTAAGAACAAAGAGCCACACACTGTCACGCAAACAGCAGACAATCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTAAGAACAAAGAGCCACACACTGTCACGCAAACAGCAGACAATCA  923

seq1  ATCGATGTTAGTTTCCCTCCACACAGCCCTTTCTTCGGCTCCATACAAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGATGTTAGTTTCCCTCCACACAGCCCTTTCTTCGGCTCCATACAAAG  973

seq1  GAGAATTC  1008
      ||||||||
seq2  GAGAATTC  981

seq1: chr4_85740597_85740673
seq2: B6Ng01-090M23.g_161_218 (reverse)

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTTGCGCGCACGCGCCTG  50
      ||||||| ||||||||||| ||||||||||||                  
seq2  CTCTCTC-CTCTCTCTCTC-CTCTCTCTCTCC------------------  30

seq1  CTTTTCTTTCCTCTCTCCTC---CCTCTCT  77
        | ||||||||||||||||   |||||||
seq2  --TCTCTTTCCTCTCTCCTCTCTCCTCTCT  58