BAC Information

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BAC

Clone NameB6Ng01-091A19
Chromosome4 (Build37)
Map Location 92,780,763 - 92,845,278
singlet/doubletdoublet
Overlap genenone
Upstream gene1700011H22Rik, LOC68280, LOC620269
Downstream geneLOC384125, Tusc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091A19.bB6Ng01-091A19.g
ACCDH903187DH903188
length1,2101,015
definitionDH903187|Mus musculus domesticus DNA, BAC clone: B6Ng01-091A19, 5' end.DH903188|Mus musculus domesticus DNA, BAC clone: B6Ng01-091A19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,780,763 - 92,781,982)(92,844,238 - 92,845,278)
sequence
gaattctcaccactgaattattaactcaagtaactaagaataaaatgtaa
aattagggactggtgagatggcttagtaggtaagagcacccgactgctct
tctgaaggtccagagttcaaatcccagcaaccacacggtggctcacaacc
atccgtaacaagatctgactccctcttctggtgtatctgaagacagctac
agtgtacttacatataataaataaataaatctttaaaaaatgtaaaatta
actaaattaaatcttctagtttcttttatatggtacaaactgaaatataa
aggtgaataaagaggatgggagtgggaggcagaggcaggcggatttctga
gttcaaggccagcctggccaacaaagtgagttccaggacagccaaggtta
tacagagaaaccctgtctcaaaaaaacaaaaacaaaaacaaacaaaaaca
aaatttaaaaaagtgaataaagaagagaaattctattttttgaaagatca
taaatcaagatgagggaagtgtttagtcggttgaaagagataatttttaa
attaaaaaaaaacaatccaaaaattatttgataataatttagttcacaaa
catggttatttctcaaaatccaagagtttaaaggattttatagcctgaga
aaaaagcaaataatttgtagagattgtctaaaataacagattgaattgta
gtaagtacatatccaagtgtagttctctctcactttctctctctctcttg
ttccctctttctctccctctctttctctccctctttttctgtccatatat
atatacatatgtatacacatacatatatatatgaaatacatatatattta
tgcatcatatacttatatacacatatatgatatcacaactttgtattatt
taatttatattttctattttctcattacatgaacaaaattgttcagagta
tataaggcaaaatgttttggttatattttgagagtagttaggacataaac
ttacaggtgctttgtaatttaagtatataacaaaaagctgcactcaagat
acactccaatgcttgctctggtttcttttagcctttgtttcttttttcta
taatttttcatagtttctgaaaagcattttcacttcattaatatgctaag
ggagatttcaactagccaatgcctggcttatatttttttcagtttggaaa
ctgtatctag
gaattcagtgtatgttttgagctttagttaattttcttttataaaggtag
atgcccttgtatttggggcatggatgttcagaattggaacttcatttttg
tgtgttttttcattgatgtgtatgaaatgtcttttgattacctttggttg
aaggtctattttattagatattagaatggcgacttcagcttgttgcttgg
gactgtttgcttggaaaatctttttccagccctgtagtctaaggtagtat
ctatgtctgttgctgagctgtgttgctttatgcagcagaatgatgaatcc
tgtttatgtatccagtctgttaacttgtgtcattttattgttgaatagag
tccattgatgttgagggataataatgacaagtgattattaattgatgttt
actcatttgtttaataaatctccataaagtctgtttttaatgtgatattt
tagaaatttcctcttaatgtaaattttacaaagtatttcatatagtaagg
taagttaaatgatactctacttcacaaaatgaaagggaaagatggattct
gacattagttgtatttggcaattttcttttgtattgtagcctcaaggatt
tcatgaaatcaccattctagaggctcgagaccacctaccaagtctacaga
agagctgacccagcctcttcctcttggccaagagaaggggacctctgctg
attgttccccatgggcactggccactgactcttctagcttggtgactcct
actcactcagacattctgcaattacaaacaaaaatcaccacttcaaaatt
ctccacaattttcctatagttgaatcagcatataaataccatttttcttt
catgtttctcagaaaggtattcaaattttactattaattttaatcagact
ataatttaatttgattactgtatctacaaaaattagatgtcatcattatt
aaaagacaatgccatgattttagtatcaaaatttaaatgttcaaactacg
ttgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_92780763_92781982
seq2: B6Ng01-091A19.b_44_1253

seq1  GAATTCTCACCACTGAATTATTAACTCAAGTAACTAAGAATAAAATGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCACTGAATTATTAACTCAAGTAACTAAGAATAAAATGTAA  50

seq1  AATTAGGGACTGGTGAGATGGCTTAGTAGGTAAGAGCACCCGACTGCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGGGACTGGTGAGATGGCTTAGTAGGTAAGAGCACCCGACTGCTCT  100

seq1  TCTGAAGGTCCAGAGTTCAAATCCCAGCAACCACACGGTGGCTCACAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGGTCCAGAGTTCAAATCCCAGCAACCACACGGTGGCTCACAACC  150

seq1  ATCCGTAACAAGATCTGACTCCCTCTTCTGGTGTATCTGAAGACAGCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGTAACAAGATCTGACTCCCTCTTCTGGTGTATCTGAAGACAGCTAC  200

seq1  AGTGTACTTACATATAATAAATAAATAAATCTTTAAAAAATGTAAAATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTACTTACATATAATAAATAAATAAATCTTTAAAAAATGTAAAATTA  250

seq1  ACTAAATTAAATCTTCTAGTTTCTTTTATATGGTACAAACTGAAATATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATTAAATCTTCTAGTTTCTTTTATATGGTACAAACTGAAATATAA  300

seq1  AGGTGAATAAAGAGGATGGGAGTGGGAGGCAGAGGCAGGCGGATTTCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAATAAAGAGGATGGGAGTGGGAGGCAGAGGCAGGCGGATTTCTGA  350

seq1  GTTCAAGGCCAGCCTGGCCAACAAAGTGAGTTCCAGGACAGCCAAGGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAGGCCAGCCTGGCCAACAAAGTGAGTTCCAGGACAGCCAAGGTTA  400

seq1  TACAGAGAAACCCTGTCTCAAAAAAACAAAAACAAAAACAAACAAAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGAAACCCTGTCTCAAAAAAACAAAAACAAAAACAAACAAAAACA  450

seq1  AAATTTAAAAAAGTGAATAAAGAAGAGAAATTCTATTTTTTGAAAGATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAAAAAAGTGAATAAAGAAGAGAAATTCTATTTTTTGAAAGATCA  500

seq1  TAAATCAAGATGAGGGAAGTGTTTAGTCGGTTGAAAGAGATAATTTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCAAGATGAGGGAAGTGTTTAGTCGGTTGAAAGAGATAATTTTTAA  550

seq1  ATTAAAAAAAAACAATCCAAAAATTATTTGATAATAATTTAGTTCACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAAAAACAATCCAAAAATTATTTGATAATAATTTAGTTCACAAA  600

seq1  CATGGTTATTTCTCAAAATCCAAGAGTTTAAAGGATTTTATAGCCTGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTATTTCTCAAAATCCAAGAGTTTAAAGGATTTTATAGCCTGAGA  650

seq1  AAAAAGCAAATAATTTGTAGAGATTGTCTAAAATAACAGATTGAATTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCAAATAATTTGTAGAGATTGTCTAAAATAACAGATTGAATTGTA  700

seq1  GTAAGTACATATCCAAGTGTAGTTCTCTCTCACTTTCTCTCTCTCTCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTACATATCCAAGTGTAGTTCTCTCTCACTTTCTCTCTCTCTCTTG  750

seq1  TTCCCTCTTTCTCTCCCTCTCTTTCTCTCCCTCTTTTTCTGTCCATATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCTTTCTCTCCCTCTCTTTCTCTCCCTCTTTTTCTGTCCATATAT  800

seq1  ATATACATATGTATACACATACATATATATATGAAATACATATATATTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACATATGTATACACATACATATATATATGAAATACATATATATTTA  850

seq1  TGCATCATATACTTATATACACATATATGATATCACAACTTTGTATTATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCATATACTTATATACACATATATGATATCACAACTTTGTATTATT  900

seq1  TAATTTATATTTTCTATTTTCTCATTACATGAACAAAATTGTTCAGAGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTATATTTTCTATTTTCTCATTACATGAACAAAATTGTTCAGAGTA  950

seq1  TATAAGGCAAAATGTTTTGGTTATATTTTGAGAGTAGTTAGGACATAAAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGGCAAAATGTTTTGGTTATATTTTGAGAGTAGTTAGGACATAAAC  1000

seq1  TTACAGGTGCTTTGTAATTTAAGGTATATAACAAAAAGCTGCACTCAAAG  1050
      |||||||||||||||||||||| ||||||||||||||||||||||| |||
seq2  TTACAGGTGCTTTGTAATTTAA-GTATATAACAAAAAGCTGCACTC-AAG  1048

seq1  ATACACTCCAAATGCTTGCTCTGGTTTCTTTTAGCCTTTTGTTTCTTTTT  1100
      ||||||||| |||||||||||||||||||||||||| |||||||||||||
seq2  ATACACTCC-AATGCTTGCTCTGGTTTCTTTTAGCC-TTTGTTTCTTTTT  1096

seq1  CTCATTATTTTTCAATAATTTCTGAAAAAGCAATTTTCACTTCATAATAA  1150
         || ||||||| ||| |||||| |||||| ||||||||||||| |  |
seq2  TCTATAATTTTTC-ATAGTTTCTG-AAAAGC-ATTTTCACTTCATTAATA  1143

seq1  GGCTAAGGGAGTATTACAACATAAGCAAAATGCTTTGCT--TATTTTTTT  1198
       |||||||||| ||| ||||   |||  ||||| | |||  |||||||||
seq2  TGCTAAGGGAG-ATTTCAAC--TAGC-CAATGCCTGGCTTATATTTTTTT  1189

seq1  CAGTGTTGGAGACTGTACCTAG  1220
      |||| ||||| |||||| ||||
seq2  CAGT-TTGGAAACTGTATCTAG  1210

seq1: chr4_92844238_92845278
seq2: B6Ng01-091A19.g_67_1081 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACACACGTAGTTTGA  50
                              |||||||||||||| |||||||||||
seq2  ------------------------CACACACACACACA-ACGTAGTTTGA  25

seq1  ACATTTAAATTTTGATAACTAAAATCATGGCATTGTCTTTTAATAATGAT  100
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACATTTAAATTTTGAT-ACTAAAATCATGGCATTGTCTTTTAATAATGAT  74

seq1  GACATCTAATTTTTGTAGATACAGTAATCAAATTAAATTATAGTCTGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCTAATTTTTGTAGATACAGTAATCAAATTAAATTATAGTCTGATT  124

seq1  AAAATTAATAGTAAAATTTGAATACCTTTCTGAGAAACATGAAAGAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAATAGTAAAATTTGAATACCTTTCTGAGAAACATGAAAGAAAAA  174

seq1  TGGTATTTATATGCTGATTCAACTATAGGAAAATTGTGGAGAATTTTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTTATATGCTGATTCAACTATAGGAAAATTGTGGAGAATTTTGAA  224

seq1  GTGGTGATTTTTGTTTGTAATTGCAGAATGTCTGAGTGAGTAGGAGTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGATTTTTGTTTGTAATTGCAGAATGTCTGAGTGAGTAGGAGTCAC  274

seq1  CAAGCTAGAAGAGTCAGTGGCCAGTGCCCATGGGGAACAATCAGCAGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTAGAAGAGTCAGTGGCCAGTGCCCATGGGGAACAATCAGCAGAGG  324

seq1  TCCCCTTCTCTTGGCCAAGAGGAAGAGGCTGGGTCAGCTCTTCTGTAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTCTCTTGGCCAAGAGGAAGAGGCTGGGTCAGCTCTTCTGTAGAC  374

seq1  TTGGTAGGTGGTCTCGAGCCTCTAGAATGGTGATTTCATGAAATCCTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAGGTGGTCTCGAGCCTCTAGAATGGTGATTTCATGAAATCCTTGA  424

seq1  GGCTACAATACAAAAGAAAATTGCCAAATACAACTAATGTCAGAATCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACAATACAAAAGAAAATTGCCAAATACAACTAATGTCAGAATCCAT  474

seq1  CTTTCCCTTTCATTTTGTGAAGTAGAGTATCATTTAACTTACCTTACTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCTTTCATTTTGTGAAGTAGAGTATCATTTAACTTACCTTACTAT  524

seq1  ATGAAATACTTTGTAAAATTTACATTAAGAGGAAATTTCTAAAATATCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATACTTTGTAAAATTTACATTAAGAGGAAATTTCTAAAATATCAC  574

seq1  ATTAAAAACAGACTTTATGGAGATTTATTAAACAAATGAGTAAACATCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAACAGACTTTATGGAGATTTATTAAACAAATGAGTAAACATCAA  624

seq1  TTAATAATCACTTGTCATTATTATCCCTCAACATCAATGGACTCTATTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAATCACTTGTCATTATTATCCCTCAACATCAATGGACTCTATTCA  674

seq1  ACAATAAAATGACACAAGTTAACAGACTGGATACATAAACAGGATTCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAAAATGACACAAGTTAACAGACTGGATACATAAACAGGATTCATC  724

seq1  ATTCTGCTGCATAAAGCAACACAGCTCAGCAACAGACATAGATACTACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCTGCATAAAGCAACACAGCTCAGCAACAGACATAGATACTACCT  774

seq1  TAGACTACAGGGCTGGAAAAAGATTTTCCAAGCAAACAGTCCCAAGCAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTACAGGGCTGGAAAAAGATTTTCCAAGCAAACAGTCCCAAGCAAC  824

seq1  AAGCTGAAGTCGCCATTCTAATATCTAATAAAATAGACCTTCAACCAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGAAGTCGCCATTCTAATATCTAATAAAATAGACCTTCAACCAAAG  874

seq1  GTAATCAAAAGACATTTCATACACATCAATGAAAAAACACACAAAAATGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCAAAAGACATTTCATACACATCAATGAAAAAACACACAAAAATGA  924

seq1  AGTTCCAATTCTGAACATCCATGCCCCAAATACAAGGGCATCTACCTTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAATTCTGAACATCCATGCCCCAAATACAAGGGCATCTACCTTTA  974

seq1  TAAAAGAAAATTAACTAAAGCTCAAAACATACACTGAATTC  1041
      |||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAAAATTAACTAAAGCTCAAAACATACACTGAATTC  1015