BAC Information

Click to search

BAC

Clone NameB6Ng01-091L18
Chromosome4 (Build37)
Map Location 42,727,824 - 42,863,289
singlet/doubletdoublet
Overlap geneLOC545614, 1700008B15Rik, Ccl19, Ccl21b, LOC100039205, LOC433698
Upstream geneLOC100039789, LOC623085, LOC100042466, LOC100042472, LOC100042493, Ccl19-ps1, LOC621580, LOC545611, LOC100042524, LOC100042519, LOC100039817, LOC100042536, LOC100039824, LOC100042539, LOC100042544, LOC100039848, LOC100039863, LOC100042555, 1700045I11Rik, LOC100039894, LOC100039909, EG545605, LOC674214, LOC100038965, LOC100039053, LOC100039193, LOC100039374, LOC100039930, LOC100038993, LOC100039939, Ccl19-ps3, Ccl21c, LOC100039323, LOC665845, LOC100039973, LOC100039986, 4933409K07Rik, LOC100039344, LOC100039995, EG623054, Ccl19-ps2, LOC100039331, LOC100039131, LOC100040035, LOC100040048, Il11ra2, LOC665962
Downstream geneBC049635, N28178, Dnajb5, 1700022I11Rik, Vcp, Fancg, Pigo, Stoml2, B230312A22Rik, Unc13b, 4930417M19Rik, Rusc2, 4833436C18Rik, Tesk1, Cd72, Sit1, Rmrp, LOC622404, E130306D19Rik, Car9, Tpm2, Tln1, Creb3, Gba2, 1110029E03Rik, LOC100039672, LOC100040179, Npr2, Spag8, Hint2, Serf2-ps, 4930412F15Rik, Olfr70, Olfr71, LOC100039781, 5430416O09Rik, A630077J23Rik, GA_x5J8B7W5BNN-892919-892147, Olfr159, Olfr29-ps1, Olfr156, LOC100040268
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091L18.bB6Ng01-091L18.g
ACCDH903680DH903681
length1,1431,122
definitionDH903680|Mus musculus domesticus DNA, BAC clone: B6Ng01-091L18, 5' end.DH903681|Mus musculus domesticus DNA, BAC clone: B6Ng01-091L18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,727,824 - 42,728,992)(42,862,151 - 42,863,289)
sequence
gaattccagcagccttcctgcgtgctctgggaagatgtccctggtgggat
gtaaaaagggcttccttgccaaggaagtttttactgtcttagcctcactg
ggtgcttcacacagcattcagcgctggttttggaggaggagagctggcag
gccccactgaagcttgctgagttgtttctttaggaggtggcgttccagtg
cttcacactcagccagcgacaggaacgggacagtaatctgtgctccttca
cgctcacagggagtcttgccattcagagaggtcggggaagagggaaaggc
tgacttacatggtgttttgggtaagaaaaggcccgagagtacccctgagg
gctgagcatctgtggagggcttggacatatcccttttcttgcaggtacct
tgagaactcaaggaagtaacatccaaggactcactgtgaagagatggaag
gccacagaataactggctataatattcactctgaagattgtcccctgagt
cattagcttttgccctggggagtggatagaaattccttagatgttcacct
tcatgagagggcaagcaagtatgaatttggtgccagggccttccttgttg
caggtttataacaggccatttggaaacccagaaggtctggacgggctggc
ctgccgaatacaagctgctggtcttgtgggaaacgatcccagttctgtcc
tcaatgaccttagaactgctgctcagagtgcaggaagatggattttctcg
agatcgacgaaataatgttgggtctggcatgagctgcctcagggactcct
ccacacgtctcggaagaccccacttctggaaatgtatgcatttttttacc
tgtagttcaagaagcccacggactttaggactaagtaatggcagatggga
gacagcattgagtccatatgtaagacatagtatgtgtcagcttggtccag
ggtagtaagacacagagggcttcatgtgatgaggtcttgcttctggtcag
ctttgctttgctttgcacttatgtttcctcatcataaaccatagttcctg
gcccttgagaactccacagtctctgagacatgggcatttggcgaatgaat
tgctagctgggaagcgatcagttcagcattctgaactcgaatg
gaattccacctgcagaagcggctgattcaccttcgctgggggctgcccca
gaggatccagcgctccataaatatgctgctctcctcaacagacccgcagt
ccctgccctgcggtggcagtaggctacctaatgtgagcatctcacagcca
gggaaaccagaggcctatgggtctggtgatacgttcttacccacagcggg
caaaggaacaacccccatgccacacttgtttgccaaggcacaggaaatgt
tgaaaagccattttgataccaaatgtgaacagatccgggagggcaaggtc
ccggcctgtgtccaaagcgcctggaaaggcagaattcctggggatttggc
agcagggactttattcccaaacattccacaaggtcagcccctggagcttc
aggcagaaaacaaccctgacctacatcaagaagctgtttcctggaaacca
atggaccttgaccaggaggctcaggccttttcaggtgttttcattgaaca
ctgtaggcgaccccaagccctgtctgaggaaaccattaagaaactggaga
caactctgagacataagtatttggccttcctgtcaggcctgcaggccctt
tactgcatggccccaactaaagcaacatccccaactgttgaccaatctgt
aatcacaactatgccctggtctgtcaaaagcccacagaagcccctatctc
agaagtctccacttgaagccctatgcctgagtgggcttgagccctgtact
caagatgacaaggagacttctgcaaacattgcagaagagttccagcatgg
agctcaggggcatggaaggacagagaagtgcctccagagagacagcctct
cctgaatagaccctactcattagacacagagatcatggagagagtgagtt
tctacctgaaaaggaaggctctggatataagttgggaatttctctaaaag
agagtgtgttccagagccactgcacagacttggagagtgatctgttcagg
agctctcagagtccacggaaagcacactgctacaggaccgccacctttat
gtcacgttctgtagctcggattcagataaggtctgccttaacagcagcta
ctgcatcagtgtggtttcagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_42727824_42728992
seq2: B6Ng01-091L18.b_47_1189

seq1  GAATTCCAGCAGCCTTCCTGCGTGCTCTGGGAAGATGTCCCTGGTGGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCAGCCTTCCTGCGTGCTCTGGGAAGATGTCCCTGGTGGGAT  50

seq1  GTAAAAAGGGCTTCCTTGCCAAGGAAGTTTTTACTGTCTTAGCCTCACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAAGGGCTTCCTTGCCAAGGAAGTTTTTACTGTCTTAGCCTCACTG  100

seq1  GGTGCTTCACACAGCATTCAGCGCTGGTTTTGGAGGAGGAGAGCTGGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTTCACACAGCATTCAGCGCTGGTTTTGGAGGAGGAGAGCTGGCAG  150

seq1  GCCCCACTGAAGCTTGCTGAGTTGTTTCTTTAGGAGGTGGCGTTCCAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCACTGAAGCTTGCTGAGTTGTTTCTTTAGGAGGTGGCGTTCCAGTG  200

seq1  CTTCACACTCAGCCAGCGACAGGAACGGGACAGTAATCTGTGCTCCTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACACTCAGCCAGCGACAGGAACGGGACAGTAATCTGTGCTCCTTCA  250

seq1  CGCTCACAGGGAGTCTTGCCATTCAGAGAGGTCGGGGAAGAGGGAAAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCACAGGGAGTCTTGCCATTCAGAGAGGTCGGGGAAGAGGGAAAGGC  300

seq1  TGACTTACATGGTGTTTTGGGTAAGAAAAGGCCCGAGAGTACCCCTGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTACATGGTGTTTTGGGTAAGAAAAGGCCCGAGAGTACCCCTGAGG  350

seq1  GCTGAGCATCTGTGGAGGGCTTGGACATATCCCTTTTCTTGCAGGTACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCATCTGTGGAGGGCTTGGACATATCCCTTTTCTTGCAGGTACCT  400

seq1  TGAGAACTCAAGGAAGTAACATCCAAGGACTCACTGTGAAGAGATGGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACTCAAGGAAGTAACATCCAAGGACTCACTGTGAAGAGATGGAAG  450

seq1  GCCACAGAATAACTGGCTATAATATTCACTCTGAAGATTGTCCCCTGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGAATAACTGGCTATAATATTCACTCTGAAGATTGTCCCCTGAGT  500

seq1  CATTAGCTTTTGCCCTGGGGAGTGGATAGAAATTCCTTAGATGTTCACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGCTTTTGCCCTGGGGAGTGGATAGAAATTCCTTAGATGTTCACCT  550

seq1  TCATGAGAGGGCAAGCAAGTATGAATTTGGTGCCAGGGCCTTCCTTGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAGAGGGCAAGCAAGTATGAATTTGGTGCCAGGGCCTTCCTTGTTG  600

seq1  CAGGTTTATAACAGGCCATTTGGAAACCCAGAAGGTCTGGACGGGCTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTATAACAGGCCATTTGGAAACCCAGAAGGTCTGGACGGGCTGGC  650

seq1  CTGCCGAATACAAGCTGCTGGTCTTGTGGGAAACGATCCCAGTTCTGTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCGAATACAAGCTGCTGGTCTTGTGGGAAACGATCCCAGTTCTGTCC  700

seq1  TCAATGACCTTAGAACTGCTGCTCAGAGTGCAGGAAGATGGATTTTCTCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGACCTTAGAACTGCTGCTCAGAGTGCAGGAAGATGGATTTTCTCG  750

seq1  AGATCGACGAAATAATGTTGGGTCTGGCATGAGCTGCCTCAGGGACTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCGACGAAATAATGTTGGGTCTGGCATGAGCTGCCTCAGGGACTCCT  800

seq1  CCACACGTCTCGGAAGACCCCACTTCTGGAAATGTATGCATTTTTTTACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACGTCTCGGAAGACCCCACTTCTGGAAATGTATGCATTTTTTTACC  850

seq1  TGTAGTTCAAGAAGCCCACGGACTTTAGGACTAAGTAATGGCAGATGGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGTAGTTCAAGAAGCCCACGGACTTTAGGACTAAGTAATGGCAGATGGG-  899

seq1  AGACAGCATTGAGTCCATATGTAAGGACATAGTATGTGTCAAGCTTGGGT  950
      |||||||||||||||||||||||| ||||||||||||||| ||||| |||
seq2  AGACAGCATTGAGTCCATATGTAA-GACATAGTATGTGTC-AGCTT-GGT  946

seq1  CCAGGGGTAGTAAAGACACAGAGGGCTTCATGTGATGAAGGTCTTGGCTT  1000
      ||| ||||||| ||||||||||||||||||||||||| ||||||| ||||
seq2  CCA-GGGTAGT-AAGACACAGAGGGCTTCATGTGATG-AGGTCTT-GCTT  992

seq1  TCCTGGTCAAGCTTTGCTTTGCTTTGCACTATTGTTTCCTCAATCATTAA  1050
        |||||| |||||||||||||||||||||  ||||||||| |||||  |
seq2  --CTGGTC-AGCTTTGCTTTGCTTTGCACTTATGTTTCCTC-ATCAT--A  1036

seq1  AACCATAGGTTCCTTGAGCCTTGAAGAACT-CACAGTCTCTGAGACCATG  1099
      ||||||| ||||| ||  ||||| |||||| |||||||||||||| ||||
seq2  AACCATA-GTTCC-TGGCCCTTG-AGAACTCCACAGTCTCTGAGA-CATG  1082

seq1  GGCATGTTGGCGAGATGAAAATTTTGGTCTAGCT-GGAGACGATCAGTCC  1148
      ||||| ||||||| |||||    |||  |||||| |||  |||||||| |
seq2  GGCAT-TTGGCGA-ATGAA----TTG--CTAGCTGGGAAGCGATCAGTTC  1124

seq1  AGCATTCTTGAACCCCGAATG  1169
      ||||||| |||| | ||||||
seq2  AGCATTC-TGAA-CTCGAATG  1143

seq1: chr4_42862151_42863289
seq2: B6Ng01-091L18.g_66_1187 (reverse)

seq1  TCCTGAAACACAACCTGCACTGCAGTAGCTGGCTGTTTAAGGCAGACCTT  50
      ||||||||| ||  |||   |||||||||| |||| ||||||||||||||
seq2  TCCTGAAAC-CACACTG--ATGCAGTAGCT-GCTG-TTAAGGCAGACCTT  45

seq1  ATCTGGATCTGGGGCTACAGGAACGTGACATAAGGTGGGCGGTCCCTGTA  100
      ||||| |||  | |||||| ||||||||||||| |  |||||| ||||||
seq2  ATCTGAATC-CGAGCTACA-GAACGTGACATAAAGGTGGCGGT-CCTGTA  92

seq1  GCAGTGTGCTTTCCCGTGGACTCCTGAGAGGCTCCTGAACAGATTCACTC  150
      |||||||||||| ||||||||| |||||| ||||||||||||| ||||||
seq2  GCAGTGTGCTTT-CCGTGGACT-CTGAGA-GCTCCTGAACAGA-TCACTC  138

seq1  TCCAAGTCTGTTGCAGTTGGCTCTTGGAACACACTCTCTTTTAGAGAAAT  200
      |||||||||| ||||| |||||| ||||||||||||||||||||||||||
seq2  TCCAAGTCTG-TGCAG-TGGCTC-TGGAACACACTCTCTTTTAGAGAAAT  185

seq1  TCCCAACTTTATATCCAGAGCCTTCCTTTTCAGGTAGAAACTCACTCTCT  250
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAC-TTATATCCAGAGCCTTCCTTTTCAGGTAGAAACTCACTCTCT  234

seq1  CCATGATCTCTGTGTCTAATGAGTAGGGTCTATTCAGGAGAGGCTGTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGATCTCTGTGTCTAATGAGTAGGGTCTATTCAGGAGAGGCTGTCTC  284

seq1  TCTGGAGGCACCTTCTCTGTCCTTCCATGCCCCTGAGCTCCATGCTGGAA  350
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGGCA-CTTCTCTGTCCTTCCATGCCCCTGAGCTCCATGCTGGAA  333

seq1  CTCTTCTGCAATGTTTGCAGAAGTCTCCTTGTCATCTTGAGTACAGGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTGCAATGTTTGCAGAAGTCTCCTTGTCATCTTGAGTACAGGGCT  383

seq1  CAAGCCCACTCAGGCATAGGGCTTCAAGTGGAGACTTCTGAGATAGGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCCACTCAGGCATAGGGCTTCAAGTGGAGACTTCTGAGATAGGGGC  433

seq1  TTCTGTGGGCTTTTGACAGACCAGGGCATAGTTGTGATTACAGATTGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGGGCTTTTGACAGACCAGGGCATAGTTGTGATTACAGATTGGTC  483

seq1  AACAGTTGGGGATGTTGCTTTAGTTGGGGCCATGCAGTAAAGGGCCTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTGGGGATGTTGCTTTAGTTGGGGCCATGCAGTAAAGGGCCTGCA  533

seq1  GGCCTGACAGGAAGGCCAAATACTTATGTCTCAGAGTTGTCTCCAGTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGACAGGAAGGCCAAATACTTATGTCTCAGAGTTGTCTCCAGTTTC  583

seq1  TTAATGGTTTCCTCAGACAGGGCTTGGGGTCGCCTACAGTGTTCAATGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGGTTTCCTCAGACAGGGCTTGGGGTCGCCTACAGTGTTCAATGAA  633

seq1  AACACCTGAAAAGGCCTGAGCCTCCTGGTCAAGGTCCATTGGTTTCCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCTGAAAAGGCCTGAGCCTCCTGGTCAAGGTCCATTGGTTTCCAGG  683

seq1  AAACAGCTTCTTGATGTAGGTCAGGGTTGTTTTCTGCCTGAAGCTCCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCTTCTTGATGTAGGTCAGGGTTGTTTTCTGCCTGAAGCTCCAGG  733

seq1  GGCTGACCTTGTGGAATGTTTGGGAATAAAGTCCCTGCTGCCAAATCCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGACCTTGTGGAATGTTTGGGAATAAAGTCCCTGCTGCCAAATCCCC  783

seq1  AGGAATTCTGCCTTTCCAGGCGCTTTGGACACAGGCCGGGACCTTGCCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTCTGCCTTTCCAGGCGCTTTGGACACAGGCCGGGACCTTGCCCT  833

seq1  CCCGGATCTGTTCACATTTGGTATCAAAATGGCTTTTCAACATTTCCTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGATCTGTTCACATTTGGTATCAAAATGGCTTTTCAACATTTCCTGT  883

seq1  GCCTTGGCAAACAAGTGTGGCATGGGGGTTGTTCCTTTGCCCGCTGTGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGCAAACAAGTGTGGCATGGGGGTTGTTCCTTTGCCCGCTGTGGG  933

seq1  TAAGAACGTATCACCAGACCCATAGGCCTCTGGTTTCCCTGGCTGTGAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACGTATCACCAGACCCATAGGCCTCTGGTTTCCCTGGCTGTGAGA  983

seq1  TGCTCACATTAGGTAGCCTACTGCCACCGCAGGGCAGGGACTGCGGGTCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACATTAGGTAGCCTACTGCCACCGCAGGGCAGGGACTGCGGGTCT  1033

seq1  GTTGAGGAGAGCAGCATATTTATGGAGCGCTGGATCCTCTGGGGCAGCCC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGGAGAGCAGCATATTTATGGAGCGCTGGATCCTCTGGGGCAGCCC  1083

seq1  CCAGCGAAGGTGAATCAGCCGCTTCTGCAGGTGGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||
seq2  CCAGCGAAGGTGAATCAGCCGCTTCTGCAGGTGGAATTC  1122