BAC Information

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BAC

Clone NameB6Ng01-092G19
Chromosome4 (Build37)
Map Location 38,576,748 - 38,689,226
singlet/doubletdoublet
Overlap geneLOC665520
Upstream geneLOC277771, LOC100039448
Downstream geneLOC100039487, 1700009N14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092G19.bB6Ng01-092G19.g
ACCDH904190DH904191
length1,1311,179
definitionDH904190|Mus musculus domesticus DNA, BAC clone: B6Ng01-092G19, 5' end.DH904191|Mus musculus domesticus DNA, BAC clone: B6Ng01-092G19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,688,069 - 38,689,226)(38,576,748 - 38,577,936)
sequence
gaattcctgcctaaactgaaaaccagcctcatgtactgaacttggagcat
cttggagcatcaggacataggcagccattattagaacacctggaccacaa
cctataacatattctaataacaaacagccacagaaacacacagcccccac
cacacacacacacacacacacacacacacagagagagagagagagagaga
gagagagagagagagaggttgagagagaaagttttgtgtgtggtttacta
gataataaactaagtcagagacagaggtttgttctataatttctgttact
ctagagaacccttctaatacagcaaaaattctgggaggggacacttgcag
ggccaatatttgaaatgtaaataaatataataattaattaaaatttaaaa
gcaaataagctgggcatggtggcacatgcctttaatcccagcactgagga
ggcagaggcaggcagatttctgagttcaaggccagcctggtctacaaagt
gagttccaggacagccagggctacaaagagaaaccctgtctcgaaaaaaa
aaaaaaaaaaaaacccaaaaaaccaaaacaaacaaaaaacaacaaccaac
caaacaaccaaccaatgaagcaagggtacctactttatcctttcttattc
gaaatcagctacatttaaagaaaagaaccatgtttaaaagcactaagaat
aggaaggaaggaggtaaaactaatttctgatgtacagctggtatgattat
tcactataaagactctatgtgtctccaagaaaactcttagacataataaa
cacagagaaaaatacatatattccaggacccattattcataccaaacctc
tactctcttaagaaaactagttatcacatttatgaatgtatcaaatgaga
gaagtgaaaggccagtaaaatgaagatttgaagatttttgtaaaagaata
acagagaaaagtatagaaaatataccaagttctagaaaggcaagttctaa
aaagagctatattatcaaataaatttgcagataatgaaatgctgtaatat
tccagtacattcctcagttattcctcaagaactttactaatattaatttt
tacactgtactttttagcttattttttttat
gaattcagcctcaaaatgagaaccttgcagatgccacaaaagaatgttgc
actgcctaaacacatactatattatgtcacatataatttaattcagagtt
tcctatttaaaatattgatgtttttgtagaattaatgataaaaatgttgt
tgttgttgttgttgtttgtaaaaaacaaagactctaatgaagctaggctt
aagttactttgttccctaagtttttcagtagcatgccgctgagacttctt
gttcaaacattagatcgcagcatgcatttcccaagggagtgcttggcctt
tcctttcctccatatgaatgcttcctgcaatgttggcatgtacctgaaaa
tttccttataacccacatgaagctattcgacggactctgtgatgaaatat
gtcacattcattttcacacaccacatataccaatagcttaatgccactct
agacaactgaaacaccattgacctttctttttaaacctatatttttaatc
ttagaaacacattaaaatgtatacaaagtaataggtcgtacacttgagtt
gttattcaaaaacattattagagatgtgttcattttgtattatgcctaat
gcatttttttacttttaattatccaagctatttttaacttgctccctgaa
agttgcttcactctttatcattaccttcatatgttctaaaaatgtaatat
gaagaaacacaaagattaaaagactattggaaaatggacattaagttgat
gtgatggtaaactttcattttcaacaacacaactgaaaattttctggata
gagtgtgaatgttgtgctttctatatcacgttgacctgaggacatgtctg
tgggagatggtcttgctgtcttacttgtggaaagactcacccaaataagg
ctggtaccttcatctatgccccagatataatagctggaggaacaacggct
ttgttgtgtgaccacttggccttcacttctttatgctaattactttgcta
atataaaaacaagtttcttgagaacccatgtgattgaaacaagcagcaat
ccaggaatcttccagacattagcatcctttggagcctcttggaggtggtg
actcaagacttgcaactatcaaatttttggcttttccagatagggaactg
tcatgttaggagtccctacacatacttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_38688069_38689226
seq2: B6Ng01-092G19.b_45_1175 (reverse)

seq1  ATAAAAAAAATAAAAAACTAAAAAAATGTACAGTGTAAAAAATAAATTAA  50
      |||||||||||   || |||||||   |||||||||||||| |||    |
seq2  ATAAAAAAAAT---AAGCTAAAAA---GTACAGTGTAAAAATTAA---TA  41

seq1  TTAGTAAAAAGTTTCCTGAGGAATAAACCTGAGGAATGTAACTGGGAATA  100
      ||||||||    ||| ||||||||||  ||||||||||| ||| ||||||
seq2  TTAGTAAA---GTTCTTGAGGAATAA--CTGAGGAATGT-ACT-GGAATA  84

seq1  TTTACAGGCATTTCATTTATTCTGCAAATTTATTTTGATAATATAGCTCT  150
       ||||| ||||||||||   |||||||||||| |||||||||||||||||
seq2  -TTACA-GCATTTCATT--ATCTGCAAATTTA-TTTGATAATATAGCTCT  129

seq1  TTTTCTAGAACTTGCCTTTCTAGGAACATGGTATATTTTTCTATACTTTT  200
      |||  ||||||||||||||||| |||| ||||||| ||||||||||||||
seq2  TTT--TAGAACTTGCCTTTCTA-GAACTTGGTATA-TTTTCTATACTTTT  175

seq1  TCTTCTGTTATTTCTTTTACAAAAATCTTCAAATCTTCATTTTACTGGCC  250
         ||||||| |||||||||||||||||||||||||||||||||||||||
seq2  --CTCTGTTA-TTCTTTTACAAAAATCTTCAAATCTTCATTTTACTGGCC  222

seq1  TTTCACTTCTCTCATTTGATACATTCATAAATGTGATAACTAGTTTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTTCTCTCATTTGATACATTCATAAATGTGATAACTAGTTTTCTT  272

seq1  AAGAGAGTAGAGGTTTGGTATGAATAATGGGTCCTGGAATATATGTATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGTAGAGGTTTGGTATGAATAATGGGTCCTGGAATATATGTATTT  322

seq1  TTCTCTTGTGTTTATTATGTCTAAGAGTTTTCTTGGAGACACATAGAGTC  400
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTC-TGTGTTTATTATGTCTAAGAGTTTTCTTGGAGACACATAGAGTC  371

seq1  TTTATAGTGAATAATCATACCAGCTGTACATCAG-AATTAGTTTTACCTC  449
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTTATAGTGAATAATCATACCAGCTGTACATCAGAAATTAGTTTTACCTC  421

seq1  CTTCCTTCCTATTCTTAGTGCTTTTAAACATGGTTCTTTTCTTTAAATGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCCTATTCTTAGTGCTTTTAAACATGGTTCTTTTCTTTAAATGT  471

seq1  AGCTGATTTCGAATAAGAAAGGATAAAGTAGGTACCCTTGCTTCATTGGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATTTCGAATAAGAAAGGATAAAGTAGGTACCCTTGCTTCATTGGT  521

seq1  TGGTTGTTTGGTTGGTTGTTGTTTTTTGTTTGTTTTGGTTTTTTGGG-TT  598
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGGTTGTTTGGTTGGTTGTTGTTTTTTGTTTGTTTTGGTTTTTTGGGTTT  571

seq1  TTTTTTTTTTTTTTTTTCGAGACAGGGTTTCTCTTTGTAGCCCTGGCTGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTCGAGACAGGGTTTCTCTTTGTAGCCCTGGCTGT  621

seq1  CCTGGAACTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAAATCTGCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAACTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAAATCTGCC  671

seq1  TGCCTCTGCCTCCTCAGTGCTGGGATTAAAGGCATGTGCCACCATGCCCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGCCTCCTCAGTGCTGGGATTAAAGGCATGTGCCACCATGCCCA  721

seq1  GCTTATTTGCTTTTAAATTTTAATTAATTATTATATTTATTTACATTTCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATTTGCTTTTAAATTTTAATTAATTATTATATTTATTTACATTTCA  771

seq1  AATATTGGCCCTGCAAGTGTCCCCTCCCAGAATTTTTGCTGTATTAGAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGGCCCTGCAAGTGTCCCCTCCCAGAATTTTTGCTGTATTAGAAG  821

seq1  GGTTCTCTAGAGTAACAGAAATTATAGAACAAACCTCTGTCTCTGACTTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTCTAGAGTAACAGAAATTATAGAACAAACCTCTGTCTCTGACTTA  871

seq1  GTTTATTATCTAGTAAACCACACACAAAACTTTCTCTCTCAACCTCTCTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTATCTAGTAAACCACACACAAAACTTTCTCTCTCAACCTCTCTC  921

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTG  971

seq1  TGTGTGTGTGGTGGGGGCTGTGTGTTTCTGTGGCTGTTTGTTATTAGAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGGTGGGGGCTGTGTGTTTCTGTGGCTGTTTGTTATTAGAAT  1021

seq1  ATGTTATAGGTTGTGGTCCAGGTGTTCTAATAATGGCTGCCTATGTCCTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATAGGTTGTGGTCCAGGTGTTCTAATAATGGCTGCCTATGTCCTG  1071

seq1  ATGCTCCAAGATGCTCCAAGTTCAGTACATGAGGCTGGTTTTCAGTTTAG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCCAAGATGCTCCAAGTTCAGTACATGAGGCTGGTTTTCAGTTTAG  1121

seq1  GCAGGAATTC  1158
      ||||||||||
seq2  GCAGGAATTC  1131

seq1: chr4_38576748_38577936
seq2: B6Ng01-092G19.g_67_1245

seq1  GAATTCAGCCTCAAAATGAGAACCTTGCAGATGCCACAAAAGAATGTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCTCAAAATGAGAACCTTGCAGATGCCACAAAAGAATGTTGC  50

seq1  ACTGCCTAAACACATACTATATTATGTCACATATAATTTAATTCAGAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTAAACACATACTATATTATGTCACATATAATTTAATTCAGAGTT  100

seq1  TCCTATTTAAAATATTGATGTTTTTGTAGAATTAATGATAAAAATGTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTTAAAATATTGATGTTTTTGTAGAATTAATGATAAAAATGTTGT  150

seq1  TGTTGTTGTTGTTGTTTGTAAAAAACAAAGACTCTAATGAAGCTAGGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTGTTGTTGTTTGTAAAAAACAAAGACTCTAATGAAGCTAGGCTT  200

seq1  AAGTTACTTTGTTCCCTAAGTTTTTCAGTAGCATGCCGCTGAGACTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACTTTGTTCCCTAAGTTTTTCAGTAGCATGCCGCTGAGACTTCTT  250

seq1  GTTCAAACATTAGATCGCAGCATGCATTTCCCAAGGGAGTGCTTGGCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAACATTAGATCGCAGCATGCATTTCCCAAGGGAGTGCTTGGCCTT  300

seq1  TCCTTTCCTCCATATGAATGCTTCCTGCAATGTTGGCATGTACCTGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCCTCCATATGAATGCTTCCTGCAATGTTGGCATGTACCTGAAAA  350

seq1  TTTCCTTATAACCCACATGAAGCTATTCGACGGACTCTGTGATGAAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTATAACCCACATGAAGCTATTCGACGGACTCTGTGATGAAATAT  400

seq1  GTCACATTCATTTTCACACACCACATATACCAATAGCTTAATGCCACTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACATTCATTTTCACACACCACATATACCAATAGCTTAATGCCACTCT  450

seq1  AGACAACTGAAACACCATTGACCTTTCTTTTTAAACCTATATTTTTAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACTGAAACACCATTGACCTTTCTTTTTAAACCTATATTTTTAATC  500

seq1  TTAGAAACACATTAAAATGTATACAAAGTAATAGGTCGTACACTTGAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAACACATTAAAATGTATACAAAGTAATAGGTCGTACACTTGAGTT  550

seq1  GTTATTCAAAAACATTATTAGAGATGTGTTCATTTTGTATTATGCCTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTCAAAAACATTATTAGAGATGTGTTCATTTTGTATTATGCCTAAT  600

seq1  GCATTTTTTTACTTTTAATTATCCAAGCTATTTTTAACTTGCTCCCTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTTTTACTTTTAATTATCCAAGCTATTTTTAACTTGCTCCCTGAA  650

seq1  AGTTGCTTCACTCTTTATCATTACCTTCATATGTTCTAAAAATGTAATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCTTCACTCTTTATCATTACCTTCATATGTTCTAAAAATGTAATAT  700

seq1  GAAGAAACACAAAGATTAAAAGACTATTGGAAAATGGACATTAAGTTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAACACAAAGATTAAAAGACTATTGGAAAATGGACATTAAGTTGAT  750

seq1  GTGATGGTAAACTTTCATTTTCAACAACACAACTGAAAATTTTCTGGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGGTAAACTTTCATTTTCAACAACACAACTGAAAATTTTCTGGATA  800

seq1  GAGTGTGAATGTTGTGCTTTCTATATCACGTTGACCTGAGGACATGTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGAATGTTGTGCTTTCTATATCACGTTGACCTGAGGACATGTCTG  850

seq1  TGGGAGATGGTCTTGCTGTCTTACTTGTGGAAAGACTCACCCAAATAAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGATGGTCTTGCTGTCTTACTTGTGGAAAGACTCACCCAAATAAGG  900

seq1  CTGGTACCTTCATCTATGCCCCAGATATAAATAGCTGGAGGAACAACGGC  950
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTGGTACCTTCATCTATGCCCCAGATAT-AATAGCTGGAGGAACAACGGC  949

seq1  TTTGTTGTGTTGACCACTTGGCCTTCACTTCTTTATGCTAATTACTTTGC  1000
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGTG-TGACCACTTGGCCTTCACTTCTTTATGCTAATTACTTTGC  998

seq1  TAATATAAAAACAAGTTTCTTTGAGAACCCAATGTGGATTGAAAACAAGC  1050
      ||||||||||||||||||| |||||||||| |||| ||||| ||||||||
seq2  TAATATAAAAACAAGTTTC-TTGAGAACCC-ATGT-GATTG-AAACAAGC  1044

seq1  AGCAATCCAGGAATCTTCCAGGACATTAGCATCACTTTGAAG-CTCTT-G  1098
      |||||||||||||||||||| |||||||||||| ||||| || ||||| |
seq2  AGCAATCCAGGAATCTTCCA-GACATTAGCATC-CTTTGGAGCCTCTTGG  1092

seq1  AGGTGGTTGGACTCAAGGACTTTGCAACTATCAGATTTTTGGCCTTTCCA  1148
      |||||||  ||||||| ||| |||||||||||| ||||||||| ||||||
seq2  AGGTGGT--GACTCAA-GAC-TTGCAACTATCAAATTTTTGGCTTTTCCA  1138

seq1  G-TAGGAGACTGTCATTGTTAGAATTCTCTCACCATACTTGA  1189
      | ||||  ||||||| |||||| | || ||   |||||||||
seq2  GATAGGGAACTGTCA-TGTTAGGAGTCCCTACACATACTTGA  1179