BAC Information

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BAC

Clone NameB6Ng01-092K07
Chromosome4 (Build37)4 (Build37)
Map Location 145,540,544 - 145,541,031146,958,111 - 146,958,636
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneVps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084
Downstream geneLOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092K07.bB6Ng01-092K07.g
ACCDH904348DH904349
length1,0781,142
definitionDH904348|Mus musculus domesticus DNA, BAC clone: B6Ng01-092K07, 5' end.DH904349|Mus musculus domesticus DNA, BAC clone: B6Ng01-092K07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(145,540,544 - 145,541,031)(146,958,111 - 146,958,636)
sequence
gaattctctgatgcattctcagtttgcctttttctgtaaaacatttctca
cattcactacatttgtaaggcttctctcctgtatgaagtctctgatgatt
attaagatggtatttttgtataaagcatttgtcacattcactacatttgt
aaggtttctctcctatatgaattctctgatgagtattaagatgtgatttt
tggttaaagcatttgtcacattcactacatttgtaaggtttctctcctgt
atgaattctctgatgaatactaagatgtgatttttggttaaagcatttgt
cacagtcactacatttgtaaggtttctctcctttatgaattcttggatga
atactaagatgggatttttggggaaagcacttgtcacattcatgatattt
gaaagatttctctcctgaatgaattatctgatgaattctcatactgcctt
tttcattaaagcatttttcacattcactgcatttgtaaggtttctctcct
gtatgaattttatgatgaatactaagatgggatttttgggaaaagcattt
gacccattcactacatttgtgaggtacataatggggggattcaagaataa
cattgctaagcttgttccattttgaagacttctcttgaatattcatgtgt
tcaagaacaatgtactggctgtcttcatccaaggccttcccatactttgc
acatatgaaatgattttctgaaaaaaaaggggggagggattagaggtgac
atgaattacttatataagaagtaagagattcaataatcagtgaactcagg
gattcgtactctcaagagaagtttttctcctttttttttttttttgaatc
attacatgtattctcagaagaacctcaaatatggtttatatcaaaagatg
ggaaatgataatacggtgctaattttattttcaaattggacatcatacca
cttcaaatatataacccagaattgctctgtcttaagaaaagagggacaag
aatggaaagaagctgaaggaagcatcagagactggacaagagatgccgat
tcttgcatccaacatggactgagcaagg
gaattcatataggagagaaaccttgcaaatgcagtgaatgtgacaaatgc
tttactggaataggcaatctgagaattcatcagagaattcatacaggaga
gaaaccttacaaatgtagtgaatgtgacaaatgctttacccacaaatccc
atcttaatattcatcagagaattcataaaggagagaaaccttacaaatgc
agtgaatgtgacaaatgctttactgaaaaaggcagtctgacaattcatca
gagaattcatacaggagagaaaacttacaaatgcagtgaatgtgacaaat
gctttatccacaaatcccatcttaataatcatcagaaaattcatacagga
gagaaatcttacaaatgcagtgaatgtgacaagtgctttactgaaaaagg
cagtctgagaactcatcagagaattcatacaggagagaaaccttacaaat
gcagtgaatgtgacaaatgctttacccgaaaattcgatcttggtattcat
cagagaattcatacaggagagaaaccgtacaaatgcagtgaatgtggcaa
atgctttactgacaaacgcactctcagaaggcatcagagaattcatacag
gagagaaaccttacaaatgcagtgaatgtgacaaatgctttactgaaaaa
ggcagtctgagaactcatcagagaattcatacaggagagaaaccttataa
atgcagtgaatgtgacaaatgctttactgaaaaaggcagtctaggaactc
atcagagaattcgtacaggagagaaaccttacaaatgcagtgaatgtgat
aaatgctttaccaacaaaccccatcttaaatatcagaaaattcatagagg
agagaaaccttacaaatagtttctatgtgacaaatacaatactcacaata
tcagtctgagaaatcatgaattatgtcatacagaagagatatttataaat
gaagtgaacgagacatcctttaccaagatatatcatctaaaattcattag
agaatacttagagaagacaacttttcaatatattgtagtatgaatccttt
ctttggcctattttctagaatgtacagtggaatactacagctagaaacta
acctcatgcatttatgaagaaatatctttgacttcatttcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145540544_145541031
seq2: B6Ng01-092K07.b_644_1122

seq1  ACATTGCTAAGTTTGTCCCATTTAGAAGACTTCTCTTGAATATTCATGTG  50
      ||||||||||| |||| |||||| ||||||||||||||||||||||||||
seq2  ACATTGCTAAGCTTGTTCCATTTTGAAGACTTCTCTTGAATATTCATGTG  50

seq1  TTCATGGACAATGTACTGGCTGTCTTGATCCAAGACCTTCTCATACTTTC  100
      |||| | ||||||||||||||||||| ||||||| ||||| |||||||| 
seq2  TTCAAGAACAATGTACTGGCTGTCTTCATCCAAGGCCTTCCCATACTTTG  100

seq1  CACATATGCAATGATTTTCTGAAAAAAAGTAGGGAGGGGCAATTAGAGGT  150
      |||||||| |||||||||||||||||||  |||| || |  |||||||||
seq2  CACATATGAAATGATTTTCTGAAAAAAA--AGGGGGGAGGGATTAGAGGT  148

seq1  GACATGAATTACTTATATAAGGAGTAAGTGATTCAATAATCAGTGATCTC  200
      ||||||||||||||||||||| |||||| ||||||||||||||||| |||
seq2  GACATGAATTACTTATATAAGAAGTAAGAGATTCAATAATCAGTGAACTC  198

seq1  ATGGATTCGTACTCTCAAGAGAGGTTTTTCTCC--------TTTTTTTGA  242
      | |||||||||||||||||||| ||||||||||        |||||||||
seq2  AGGGATTCGTACTCTCAAGAGAAGTTTTTCTCCTTTTTTTTTTTTTTTGA  248

seq1  ATCATTACATGTATCCTCAAAAGAACTTCAAATATGGTCTATATCAAATG  292
      |||||||||||||| |||| |||||| ||||||||||| ||||||||| |
seq2  ATCATTACATGTATTCTCAGAAGAACCTCAAATATGGTTTATATCAAAAG  298

seq1  ATTGGAAATGATAGTAACCTGCTAAATTTCAGTTTCAAATTGGACATCAT  342
      || |||||||||| ||   |||| ||||| | ||||||||||||||||||
seq2  ATGGGAAATGATAATACGGTGCT-AATTTTATTTTCAAATTGGACATCAT  347

seq1  ACCCACCTCAAATATAATAACCCAGAATTGCTCCCGTGTTAAGGAAAAAG  392
      | |||| |||||||| |||||||||||||||| | || |||||  |||||
seq2  A-CCACTTCAAATAT-ATAACCCAGAATTGCT-CTGTCTTAAG--AAAAG  392

seq1  AGGGAAAAAAATGGAAAAGAGGCTGAAGGTAAGGCCATCCAGAGACTGGA  442
      ||||| || ||||| ||||| |||||||| |||  ||| |||||||||||
seq2  AGGGACAAGAATGG-AAAGAAGCTGAAGG-AAG--CAT-CAGAGACTGGA  437

seq1  CCAAAGAGATGCAGATCCCTGCAGCCAACCATTAGACTGAGCAGGG  488
      |  ||||||||| ||| | |||| |||||   | ||||||||| ||
seq2  C--AAGAGATGCCGATTCTTGCATCCAAC--ATGGACTGAGCAAGG  479

seq1: chr4_146958111_146958636
seq2: B6Ng01-092K07.g_707_1211

seq1  CTTTACTGGAAAAGGCAGTCTGAGAATTCATCAGAGAATGCATACAGGAG  50
      |||||||| ||||||||||||||||| |||||||||||| ||||||||||
seq2  CTTTACTGAAAAAGGCAGTCTGAGAACTCATCAGAGAATTCATACAGGAG  50

seq1  AGAAACCTTACAAGTGTAGTGAATGTGACAAATGCTTTACCCAAAAATCC  100
      |||||||||| || || |||||||||||||||||||||||  |||||  |
seq2  AGAAACCTTATAAATGCAGTGAATGTGACAAATGCTTTACTGAAAAAGGC  100

seq1  CATCTTAATATTCATCAGGGAATTCATACAGGAGAGAAACCTTACAAATG  150
        |||    | ||||||| |||||| ||||||||||||||||||||||||
seq2  AGTCTAGGAACTCATCAGAGAATTCGTACAGGAGAGAAACCTTACAAATG  150

seq1  CAGTGAATGTGACAAATGCTTTACCCACAAATCCCATCTTATTAATCATC  200
      |||||||||||| |||||||||||| ||||| |||||||||  ||| |||
seq2  CAGTGAATGTGATAAATGCTTTACCAACAAACCCCATCTTA--AAT-ATC  197

seq1  AGAAAATTCATACAGGAGAGAAACCTTACAAATAGTTTACATGTGACAAA  250
      |||||||||||| |||||||||||||||||||||||||  ||||||||||
seq2  AGAAAATTCATAGAGGAGAGAAACCTTACAAATAGTTTCTATGTGACAAA  247

seq1  TACAATACTCACAATGTCAGTCTGAGAAATCATGAATTTTTTCATACAGT  300
      ||||||||||||||| |||||||||||||||||||||| | |||||||| 
seq2  TACAATACTCACAATATCAGTCTGAGAAATCATGAATTATGTCATACAGA  297

seq1  AGAGAATATTTATAAATGAAGTGAACGAGACAATCCTTTACCAAGATATA  350
      |||| |||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGAG-ATATTTATAAATGAAGTGAACGAGAC-ATCCTTTACCAAGATATA  345

seq1  TCATCTTAAAATTCATTAGAGAATAGTTAGAGAAGACAAACTTTTCAAAT  400
      ||||| ||||||||||||||||||| ||||||||||| |||||||| |||
seq2  TCATC-TAAAATTCATTAGAGAATACTTAGAGAAGAC-AACTTTTC-AAT  392

seq1  ATATTGTAGGTATGAATCCTTTTTTTTTTTTTTTTGGCCTATTTCCTAGA  450
      |||||||| ||||||||||         ||| |||||||||||| |||||
seq2  ATATTGTA-GTATGAATCC---------TTTCTTTGGCCTATTTTCTAGA  432

seq1  CTGTAACAGT-GAATACTTACAGGCTAGAAACTTAACTCATGCATTGTAT  499
       ||| ||||| |||||| |||| |||||||||| | |||||||||| |||
seq2  ATGT-ACAGTGGAATAC-TACA-GCTAGAAACTAACCTCATGCATT-TAT  478

seq1  GAAGAAATATCTTTGACTTCACTTCAG  526
      ||||||||||||||||||||| |||||
seq2  GAAGAAATATCTTTGACTTCATTTCAG  505