BAC Information

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BAC

Clone NameB6Ng01-092O19
Chromosome4 (Build37)
Map Location 53,374,306 - 53,533,287
singlet/doubletdoublet
Overlap geneSlc44a1
Upstream geneLOC666724, Smc2, LOC100040883, 4930547C10Rik, LOC100040908, LOC666761, Olfr275, Olfr274-ps1, Olfr273, LOC230185, Olfr272, Olfr271-ps1, Olfr270, 1700054F22Rik, Nipsnap3a, Abca1, 4930522O17Rik, AI427809, LOC100041197
Downstream geneFsd1l, LOC666483, Fcmd, Tal2, LOC435784, Tmem38b, LOC670124, LOC100041280
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092O19.bB6Ng01-092O19.g
ACCDH904551DH904552
length1,0101,142
definitionDH904551|Mus musculus domesticus DNA, BAC clone: B6Ng01-092O19, 5' end.DH904552|Mus musculus domesticus DNA, BAC clone: B6Ng01-092O19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,374,306 - 53,375,317)(53,532,132 - 53,533,287)
sequence
gaattcccctggctacctgtctggaaagtagatcggacagaagcacaagt
ggaaatggtccttgtccaagcatcccagatccttgatgaatcctctcctc
cactgccttttgtaagagagaaacattacaggtatctggagaggccaaga
acaagaagccctttgtgttcgtttctgttgctttcagaaaaacataactt
gggtgcttcatacactacaagctttgggacagaaatcccagtagacttat
tcactgaggctggaaacctagtggaaactgctcacactgattgtggttat
tgcttctttccatatgtaaaaccatgacattgcatcatactttttttcct
gagcttgcaatggctggagaaccctgctataaagattgtagtcccccatt
actggaaggatctccgagcttggtgcaaaatctgagccaggcttcccttt
ctctgtctggtttggctgaagagtgtccctgagcacaggtgcctggcttt
atctgaagaatgaccttgtgcaaagctgcttcactcagcacagaagtccc
actctgccttcccaccagaatgatagttacctactgtattatgatcaatt
aaccctttccacccacacccctaaaggccttatataccctataagttggg
tgtataaaggagactcctctcactgctgttgaaactgttggttctcatgg
ccattggaaacctgctctctgcttctgatcccattgtctttacagaccaa
tggctaatgctacccccacccccaactctgcctaggagaagagagaccac
agctactacaacaaggctcaaaaaaaatctagctttccatacccctcaac
cctgtctttccctctatctatcaagcttgcttttattattttcagaagaa
aatcctgggccttgcatatgatgggcagcattctacactgaggtaaaccc
aatctcctctcctcctctccttctcttcttctctctcttctcttcttctt
cttcttcttc
gaattccaattcaggggttgctattaaagcaggtatggctatatataccc
aaagtttcctctcttggaattttaataaagttttatgcttgccaactaaa
gttactgttgtgcccatcttctaccatgtggaagttctcaccattactgc
tgttatgtattaggaaccaggagctcaccatgtagcctaccctgccttgg
aattcaccatccccccgcccttccctctcaagggttgggaatacaggcat
acatcaacatgcccaggttctttcttattctttataccaaccggctccca
agcccaagggtgcttgctatttgctaaaacatttattaattaatacttct
ggaatgaaaagctaccaactccactggaagtgtcttcttagggtagatat
gaataaaccacactcagtatcacatttacttacaaggatactggcctaga
aatgaagcatgccagatcaagacacaggccatgcctcttcaagaaatcac
aagagcaaacaaatcacacagagggcaattttagccttcacttggtactc
ctggagacacgtcaggttcaaggcaccaaaactcacatccagtatgtttg
aaaggatacatcggaagatagtttaagattagacaatagctctgagtgtc
atataaaacatacagacttctaccactgatgagttctgagcaatgggtta
gtgctgactgaaaaccctgaggactgataataactgtttatagcagctgt
atctaaggaactgatagggagactggatgtggagagagtctaacattcca
ctaatagaaagataatggaacaggtggcagctaacaccaactgtcaacaa
catttttaccagttttaaatatttttaaaatatttttcttgtattgattt
gtcgcaaaaaatcccaatgaggtaggtacagaaactgtccatgacagtca
tggggctgagcttcaagaggtcaaatactgttcagaagtcttagactact
aagttgaagatcaacagttgaatctaatatttatctgagagtctatcttt
tatcagcgaactatactgcctatggtgggacacgtggtttaaggacggta
cccatacctagacagtataagaagtacaggtcgacaactgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_53374306_53375317
seq2: B6Ng01-092O19.b_49_1058

seq1  GAATTCCCCTGGCTACCTGTCTGGAAAGTAGATCGGACAGAAGCACAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTGGCTACCTGTCTGGAAAGTAGATCGGACAGAAGCACAAGT  50

seq1  GGAAATGGTCCTTGTCCAAGCATCCCAGATCCTTGATGAATCCTCTCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGGTCCTTGTCCAAGCATCCCAGATCCTTGATGAATCCTCTCCTC  100

seq1  CACTGCCTTTTGTAAGAGAGAAACATTACAGGTATCTGGAGAGGCCAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCTTTTGTAAGAGAGAAACATTACAGGTATCTGGAGAGGCCAAGA  150

seq1  ACAAGAAGCCCTTTGTGTTCGTTTCTGTTGCTTTCAGAAAAACATAACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAGCCCTTTGTGTTCGTTTCTGTTGCTTTCAGAAAAACATAACTT  200

seq1  GGGTGCTTCATACACTACAAGCTTTGGGACAGAAATCCCAGTAGACTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCTTCATACACTACAAGCTTTGGGACAGAAATCCCAGTAGACTTAT  250

seq1  TCACTGAGGCTGGAAACCTAGTGGAAACTGCTCACACTGATTGTGGTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAGGCTGGAAACCTAGTGGAAACTGCTCACACTGATTGTGGTTAT  300

seq1  TGCTTCTTTCCATATGTAAAACCATGACATTGCATCATACTTTTTTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTTTCCATATGTAAAACCATGACATTGCATCATACTTTTTTTCCT  350

seq1  GAGCTTGCAATGGCTGGAGAACCCTGCTATAAAGATTGTAGTCCCCCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTGCAATGGCTGGAGAACCCTGCTATAAAGATTGTAGTCCCCCATT  400

seq1  ACTGGAAGGATCTCCGAGCTTGGTGCAAAATCTGAGCCAGGCTTCCCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAAGGATCTCCGAGCTTGGTGCAAAATCTGAGCCAGGCTTCCCTTT  450

seq1  CTCTGTCTGGTTTGGCTGAAGAGTGTCCCTGAGCACAGGTGCCTGGCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTGGTTTGGCTGAAGAGTGTCCCTGAGCACAGGTGCCTGGCTTT  500

seq1  ATCTGAAGAATGACCTTGTGCAAAGCTGCTTCACTCAGCACAGAAGTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAAGAATGACCTTGTGCAAAGCTGCTTCACTCAGCACAGAAGTCCC  550

seq1  ACTCTGCCTTCCCACCAGAATGATAGTTACCTACTGTATTATGATCAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCCTTCCCACCAGAATGATAGTTACCTACTGTATTATGATCAATT  600

seq1  AACCCTTTCCACCCACACCCCTAAAGGCCTTATATACCCTATAAGTTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTTCCACCCACACCCCTAAAGGCCTTATATACCCTATAAGTTGGG  650

seq1  TGTATAAAGGAGACTCCTCTCACTGCTGTTGAAACTGTTGGTTCTCATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAAAGGAGACTCCTCTCACTGCTGTTGAAACTGTTGGTTCTCATGG  700

seq1  CCATTGGAAACCTGCTCTCTGCTTCTGATCCCATTGTCTTTACAGACCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGGAAACCTGCTCTCTGCTTCTGATCCCATTGTCTTTACAGACCAA  750

seq1  TGGCTAATGCTACCCCCACCCCCAACTCTGCCTAGGAGAAGAGAGACCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAATGCTACCCCCACCCCCAACTCTGCCTAGGAGAAGAGAGACCAC  800

seq1  AGCTACTACAACAAGGCTCAAAAAAAATCTAGCTTTCCATACCCCTCAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACTACAACAAGGCTCAAAAAAAATCTAGCTTTCCATACCCCTCAAC  850

seq1  CCTGTCTTTCCCTCTATCTATCAAGCTTGCTTTTATTATTTTCAGAAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTTTCCCTCTATCTATCAAGCTTGCTTTTATTATTTTCAGAAGAA  900

seq1  AATCCTGGGCCTTGCATATGATGGGCAAGCATTCTACACTGAGGTAAACC  950
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AATCCTGGGCCTTGCATATGATGGGC-AGCATTCTACACTGAGGTAAACC  949

seq1  CAATCTCCTCCTCCTCCTCCTCCTTCTTCTTCTTCT---TCTTCTTCTTC  997
      ||||||||| |||||||| ||||||| |||||||||   ||||| |||||
seq2  CAATCTCCT-CTCCTCCT-CTCCTTC-TCTTCTTCTCTCTCTTC-TCTTC  995

seq1  TTCTTCTTCTTCTTC  1012
      |||||||||||||||
seq2  TTCTTCTTCTTCTTC  1010

seq1: chr4_53532132_53533287
seq2: B6Ng01-092O19.g_72_1213 (reverse)

seq1  CACAGTTGTCAGCCCTGTAACTTCTTATACCCTGTCTTAGGTATGGGGTA  50
      |||||||||| | ||||| ||||||||||  ||||| ||||||| |||||
seq2  CACAGTTGTC-GACCTGT-ACTTCTTATA--CTGTC-TAGGTAT-GGGTA  44

seq1  CGGTTCTTTAGACACGTGTACCA-CATAGGCAGTGTAGTTCGCTGGATAA  99
      | || ||| |  ||||||| ||| |||||||||| ||||||||| |||||
seq2  CCGTCCTTAAACCACGTGTCCCACCATAGGCAGTATAGTTCGCT-GATAA  93

seq1  AAGTATAGGCTCTCAGATAAATTATTTAGATTCAACTGTTGATTCTTCAA  149
      ||| |||| |||||||||||||   ||||||||||||||||| |||||||
seq2  AAG-ATAGACTCTCAGATAAAT--ATTAGATTCAACTGTTGA-TCTTCAA  139

seq1  CTTAGTAGTCTTAAGAC-TCTGAACAAGTTATTTGACCTCTTGAAGCCTC  198
      |||||||||| |||||| ||||||||   ||||||||||||||||| |||
seq2  CTTAGTAGTC-TAAGACTTCTGAACA--GTATTTGACCTCTTGAAG-CTC  185

seq1  AGCCCCATGACTGTCATGGGACAGTTTCTGTACCTACCTCATTGGGATTT  248
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGCCCCATGACTGTCAT-GGACAGTTTCTGTACCTACCTCATTGGGATTT  234

seq1  TTTGCGACAAATCAATACAAGAAAAATATTTTAAAAATATTTAAAACTGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCGACAAATCAATACAAGAAAAATATTTTAAAAATATTTAAAACTGG  284

seq1  TAAAAATGTTGTTGACAGTTGGTGTTAGCTGCCACCTGTTCCATTATCTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGTTGTTGACAGTTGGTGTTAGCTGCCACCTGTTCCATTATCTT  334

seq1  TCTATTAGTGGAATGTTAGACTCTCTCCACATCCAGTCTCCCTATCAGTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTAGTGGAATGTTAGACTCTCTCCACATCCAGTCTCCCTATCAGTT  384

seq1  CCTTAGATACAGCTGCTATAAACAGTTATTATCAGTCCTCAGGGTTTTCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGATACAGCTGCTATAAACAGTTATTATCAGTCCTCAGGGTTTTCA  434

seq1  GTCAGCACTAACCCATTGCTCAGAACTCATCAGTGGTAGAAGTCTGTATG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCACTAACCCATTGCTCAGAACTCATCAGTGGTAGAAGTCTGTATG  484

seq1  TTTTATATGACACTCAGAGCTATTGTCTAATCTTAAACTATCTTCCGATG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATGACACTCAGAGCTATTGTCTAATCTTAAACTATCTTCCGATG  534

seq1  TATCCTTTCAAACATACTGGATGTGAGTTTTGGTGCCTTGAACCTGACGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTTCAAACATACTGGATGTGAGTTTTGGTGCCTTGAACCTGACGT  584

seq1  GTCTCCAGGAGTACCAAGTGAAGGCTAAAATTGCCCTCTGTGTGATTTGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCAGGAGTACCAAGTGAAGGCTAAAATTGCCCTCTGTGTGATTTGT  634

seq1  TTGCTCTTGTGATTTCTTGAAGAGGCATGGCCTGTGTCTTGATCTGGCAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTTGTGATTTCTTGAAGAGGCATGGCCTGTGTCTTGATCTGGCAT  684

seq1  GCTTCATTTCTAGGCCAGTATCCTTGTAAGTAAATGTGATACTGAGTGTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATTTCTAGGCCAGTATCCTTGTAAGTAAATGTGATACTGAGTGTG  734

seq1  GTTTATTCATATCTACCCTAAGAAGACACTTCCAGTGGAGTTGGTAGCTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTCATATCTACCCTAAGAAGACACTTCCAGTGGAGTTGGTAGCTT  784

seq1  TTCATTCCAGAAGTATTAATTAATAAATGTTTTAGCAAATAGCAAGCACC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCCAGAAGTATTAATTAATAAATGTTTTAGCAAATAGCAAGCACC  834

seq1  CTTGGGCTTGGGAGCCGGTTGGTATAAAGAATAAGAAAGAACCTGGGCAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGCTTGGGAGCCGGTTGGTATAAAGAATAAGAAAGAACCTGGGCAT  884

seq1  GTTGATGTATGCCTGTATTCCCAACCCTTGAGAGGGAAGGGCGGGGGGAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATGTATGCCTGTATTCCCAACCCTTGAGAGGGAAGGGCGGGGGGAT  934

seq1  GGTGAATTCCAAGGCAGGGTAGGCTACATGGTGAGCTCCTGGTTCCTAAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATTCCAAGGCAGGGTAGGCTACATGGTGAGCTCCTGGTTCCTAAT  984

seq1  ACATAACAGCAGTAATGGTGAGAACTTCCACATGGTAGAAGATGGGCACA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAACAGCAGTAATGGTGAGAACTTCCACATGGTAGAAGATGGGCACA  1034

seq1  ACAGTAACTTTAGTTGGCAAGCATAAAACTTTATTAAAATTCCAAGAGAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAACTTTAGTTGGCAAGCATAAAACTTTATTAAAATTCCAAGAGAG  1084

seq1  GAAACTTTGGGTATATATAGCCATACCTGCTTTAATAGCAACCCCTGAAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTTGGGTATATATAGCCATACCTGCTTTAATAGCAACCCCTGAAT  1134

seq1  TGGAATTC  1156
      ||||||||
seq2  TGGAATTC  1142