BAC Information

Click to search

BAC

Clone NameB6Ng01-093B08
Chromosome4 (Build37)
Map Location 66,028,264 - 66,113,323
singlet/doubletdoublet
Overlap geneAstn2
Upstream geneTrim32
Downstream geneLOC667499, Tlr4, LOC100039379
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093B08.bB6Ng01-093B08.g
ACCDH904666DH904667
length1,169972
definitionDH904666|Mus musculus domesticus DNA, BAC clone: B6Ng01-093B08, 5' end.DH904667|Mus musculus domesticus DNA, BAC clone: B6Ng01-093B08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,028,264 - 66,029,457)(66,112,351 - 66,113,323)
sequence
gaattctttaggttcttcctatttagaataaatacatttaaaaaaaaaac
aaaaaccaagtaggtcttttgttgaaaatatgtcacttgggctacagagt
gctacgagttcctagtctggacgatgttttctggagggaggggataagga
gaaagggaagtacaagacaaggtactgcttggacagaaaagggaacctgg
cttctccaataggcaaggagatgtaccagactgctggctgcaaacagggc
aagaatgatcaccaagtctgtattcaggaggaggccctgataaagtgagg
caatgctgattggctggctccaaaaacatctccccaaacaggttttaaaa
gcctaaaattccaccattaatccttccagttaagcctttgaaggcctctg
ttagcatataaatgtttctctagggaggaataataaaatttaattcaagt
gaacaaacatttactgacagtagtttcaaaacaggcacttgtacaacata
gtagggtatcaaaagatggacaagatattttgctatcctgtgggagctta
catctcacagggaattggaggatgcatgtcagataaccttaaagagggct
gtcaaacacatgacatagcaggatggtagctctttagttgttccctcttc
tgtatattttatcaagagctaaattacagcttcacctcgtgttgaaagag
gtgacatctgtgttccttgcctggaatgtcataggcagccatatgtgttt
tctaagcaaacaaaagaaatggcatgattctggaaaaaaatgcatttttc
aaagatcaatccaactggttcagaaaaagacagggtaaatgccagagaga
cagatgaggaaccaacaggaaaagttttagagagcaagaggcagagcttg
tgagtaaagggcaaaagagaagggcggggggagctctggagaattacggg
acagtacttacagtggagttcagaacacagtagaactcaaccccacccca
cccccaccccccgggcaactcaacctgtgggcttaagttgagtgtggagt
acagcatctaataaaatgaattacatgatagaaagcatgaagttctttag
agaagtggtcatgtcactagcaagaatctaggtttctgtgaagggattta
tggatatttttgggggggg
gaattcagttgaagtccccatggagacatgatgataggaatagaagaaca
ttcattggtagctaagaatgctataggctagtggtaacacagtgcttaaa
atcatgctcattaaaactctaattgaacactggtgggtacaccaggatgt
attttggacaattccatggtcgctcagtgacctgattaaaactcagcaaa
acaaagcaaagagagaagacactgggaatgggaccaaagggagtaggtga
gggtacaggggtgagaggggaacaagagacagtgtaggtgagaataacca
cactgacatatataagtgtattaacttgccaaagaataagcttaataaaa
gaatataccaaagcccaattattgctccatatactcttattataggttta
acattctgagcaaccttaatagatgttgaaaaaaaaagagcttcctatac
tgtgatacttagtgatactgcgtatacttagtgatttcttaaatggttac
ttttaattagatttccttgttctctgtttttcttgttacaacttgaagaa
actttacttgagtaatagttccagttttctttttctctttttctttttct
ttttctttttttttttctttttctttttggtttttcaagacagggttttc
tctgtatagccctggctttcctggagctcactttgtagaccaggctggcc
tcgaactcagaaatccacctgcctctgcctcccgagtgccaggattaaag
tcctgtgccaccacgccgggctagttccagttttctataatcccacccag
aagtgtcttatgtaatcagtgaaattcactataaaatggatttacaaact
cattcttcacttttgtctatgtatttgtctagtgtttgtttatttcatgt
gtgcctgactggagatggctccactctggcattttatatatgtaaaagac
agctggaagatctcttcactga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_66028264_66029457
seq2: B6Ng01-093B08.b_45_1213

seq1  GAATTCTTTAGGTTCTTCCTATTTAGAATAAATACATTTAAAAAAAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGGTTCTTCCTATTTAGAATAAATACATTTAAAAAAAAAAC  50

seq1  AAAAACCAAGTAGGTCTTTTGTTGAAAATATGTCACTTGGGCTACAGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCAAGTAGGTCTTTTGTTGAAAATATGTCACTTGGGCTACAGAGT  100

seq1  GCTACGAGTTCCTAGTCTGGACGATGTTTTCTGGAGGGAGGGGATAAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACGAGTTCCTAGTCTGGACGATGTTTTCTGGAGGGAGGGGATAAGGA  150

seq1  GAAAGGGAAGTACAAGACAAGGTACTGCTTGGACAGAAAAGGGAACCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGAAGTACAAGACAAGGTACTGCTTGGACAGAAAAGGGAACCTGG  200

seq1  CTTCTCCAATAGGCAAGGAGATGTACCAGACTGCTGGCTGCAAACAGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCAATAGGCAAGGAGATGTACCAGACTGCTGGCTGCAAACAGGGC  250

seq1  AAGAATGATCACCAAGTCTGTATTCAGGAGGAGGCCCTGATAAAGTGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGATCACCAAGTCTGTATTCAGGAGGAGGCCCTGATAAAGTGAGG  300

seq1  CAATGCTGATTGGCTGGCTCCAAAAACATCTCCCCAAACAGGTTTTAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTGATTGGCTGGCTCCAAAAACATCTCCCCAAACAGGTTTTAAAA  350

seq1  GCCTAAAATTCCACCATTAATCCTTCCAGTTAAGCCTTTGAAGGCCTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAAATTCCACCATTAATCCTTCCAGTTAAGCCTTTGAAGGCCTCTG  400

seq1  TTAGCATATAAATGTTTCTCTAGGGAGGAATAATAAAATTTAATTCAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATATAAATGTTTCTCTAGGGAGGAATAATAAAATTTAATTCAAGT  450

seq1  GAACAAACATTTACTGACAGTAGTTTCAAAACAGGCACTTGTACAACATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAACATTTACTGACAGTAGTTTCAAAACAGGCACTTGTACAACATA  500

seq1  GTAGGGTATCAAAAGATGGACAAGATATTTTGCTATCCTGTGGGAGCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGTATCAAAAGATGGACAAGATATTTTGCTATCCTGTGGGAGCTTA  550

seq1  CATCTCACAGGGAATTGGAGGATGCATGTCAGATAACCTTAAAGAGGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCACAGGGAATTGGAGGATGCATGTCAGATAACCTTAAAGAGGGCT  600

seq1  GTCAAACACATGACATAGCAGGATGGTAGCTCTTTAGTTGTTCCCTCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAACACATGACATAGCAGGATGGTAGCTCTTTAGTTGTTCCCTCTTC  650

seq1  TGTATATTTTATCAAGAGCTAAATTACAGCTTCACCTCGTGTTGAAAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATTTTATCAAGAGCTAAATTACAGCTTCACCTCGTGTTGAAAGAG  700

seq1  GTGACATCTGTGTTCCTTGCCTGGAATGTCATAGGCAGCCATATGTGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATCTGTGTTCCTTGCCTGGAATGTCATAGGCAGCCATATGTGTTT  750

seq1  TCTAAGCAAACAAAAGAAATGGCATGATTCTGGAAAAAAAATGCATTTTT  800
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCTAAGCAAACAAAAGAAATGGCATGATTCTGG-AAAAAAATGCATTTTT  799

seq1  CAAAGATCAATCCAACTGGTTCAGAAAAAGACAGGGTAAATGCCAGAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATCAATCCAACTGGTTCAGAAAAAGACAGGGTAAATGCCAGAGAG  849

seq1  ACAGATGAGGAACCAACAGGAAAAGTTTTAGAGAGCAAGAGGCAGAGCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGAGGAACCAACAGGAAAAGTTTTAGAGAGCAAGAGGCAGAGCTT  899

seq1  GTGAGTAAAGGGCAAAAGAGAAGGGGCGGGGGGAGCTCTGGAAGAAATTA  950
      |||||||||||||||||||||| |||||||||||||||||||   |||||
seq2  GTGAGTAAAGGGCAAAAGAGAA-GGGCGGGGGGAGCTCTGGA--GAATTA  946

seq1  CGGGACAGTACTTACAGTGGAAGTTCAGAACACAGTAGAACCTCCACCCC  1000
      |||||||||||||||||||| ||||||||||||||||||||   || |||
seq2  CGGGACAGTACTTACAGTGG-AGTTCAGAACACAGTAGAAC--TCAACCC  993

seq1  CACCCCACCCCCACCCCCCCGGCAACCTCAACCCTGTGAGCTTAAAGTTG  1050
      ||||||||||||||||||| ||||| ||||| |||||| |||| ||||||
seq2  CACCCCACCCCCACCCCCCGGGCAA-CTCAA-CCTGTGGGCTT-AAGTTG  1040

seq1  AGTGTGGAAGTAACAGCAATCTAATAAAAATGATTACATGATTCAGAAAG  1100
      ||||||| ||| ||||| |||||||||||   ||||||||||  ||||||
seq2  AGTGTGG-AGT-ACAGC-ATCTAATAAAATGAATTACATGAT--AGAAAG  1085

seq1  CATAGTAGGTCCTTTAGAGAAAAGTGTCATTGTACACTAAGCAAGAATAC  1150
      |||   | || ||||||||||  | |||| ||| |||| ||||||||| |
seq2  CAT--GAAGTTCTTTAGAGAAGTG-GTCA-TGT-CACT-AGCAAGAAT-C  1128

seq1  TAAAGTTTTCTGTGAAGGGGTATTATGATTATTTTTGGGGGGGG  1194
      |  || ||||||||||||| | |||||  |||||||||||||||
seq2  T--AGGTTTCTGTGAAGGGAT-TTATGGATATTTTTGGGGGGGG  1169

seq1: chr4_66112351_66113323
seq2: B6Ng01-093B08.g_68_1039 (reverse)

seq1  TCAGTGAGAGA-ATCTGTCCAGCTGTCTTTTACATATGATAAAATGCCAG  49
      ||||||| ||| |||| |||||||||||||||||||| ||||||||||||
seq2  TCAGTGA-AGAGATCT-TCCAGCTGTCTTTTACATAT-ATAAAATGCCAG  47

seq1  AGTGGAGCCATCTCCAGTCAGGCACACATGAAATAAACAAACACTAGACA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGCCATCTCCAGTCAGGCACACATGAAATAAACAAACACTAGACA  97

seq1  AATACATAGACAAAAGTGAAGAATGAGTTTGTAAATCCATTTTATAGTGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATAGACAAAAGTGAAGAATGAGTTTGTAAATCCATTTTATAGTGA  147

seq1  ATTTCACTGATTACATAAGACACTTCTGGGTGGGATTATAGAAAACTGGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACTGATTACATAAGACACTTCTGGGTGGGATTATAGAAAACTGGA  197

seq1  ACTAGCCCGGCGTGGTGGCACAGGACTTTAATCCTGGCACTCGGGAGGCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCCCGGCGTGGTGGCACAGGACTTTAATCCTGGCACTCGGGAGGCA  247

seq1  GAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGC  297

seq1  TCCAGGAAAGCCAGGGCTATACAGAG-AAACCCTGTCTTGAAAAACCAAA  348
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCCAGGAAAGCCAGGGCTATACAGAGAAAACCCTGTCTTGAAAAACCAAA  347

seq1  AAGAAAAAGAAAAAAAAAAAGAAAAAGAAAAAGAAAAAGAGAAAAAGAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAGAAAAAAAAAAAGAAAAAGAAAAAGAAAAAGAGAAAAAGAAA  397

seq1  ACTGGAACTATTACTCAAGTAAAGTTTCTTCAAGTTGTAACAAGAAAAAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAACTATTACTCAAGTAAAGTTTCTTCAAGTTGTAACAAGAAAAAC  447

seq1  AGAGAACAAGGAAATCTAATTAAAAGTAACCATTTAAGAAATCACTAAGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACAAGGAAATCTAATTAAAAGTAACCATTTAAGAAATCACTAAGT  497

seq1  ATACGCAGTATCACTAAGTATCACAGTATAGGAAGCTCTTTTTTTTTCAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGCAGTATCACTAAGTATCACAGTATAGGAAGCTCTTTTTTTTTCAA  547

seq1  CATCTATTAAGGTTGCTCAGAATGTTAAACCTATAATAAGAGTATATGGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATTAAGGTTGCTCAGAATGTTAAACCTATAATAAGAGTATATGGA  597

seq1  GCAATAATTGGGCTTTGGTATATTCTTTTATTAAGCTTATTCTTTGGCAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAATTGGGCTTTGGTATATTCTTTTATTAAGCTTATTCTTTGGCAA  647

seq1  GTTAATACACTTATATATGTCAGTGTGGTTATTCTCACCTACACTGTCTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATACACTTATATATGTCAGTGTGGTTATTCTCACCTACACTGTCTC  697

seq1  TTGTTCCCCTCTCACCCCTGTACCCTCACCTACTCCCTTTGGTCCCATTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCCCTCTCACCCCTGTACCCTCACCTACTCCCTTTGGTCCCATTC  747

seq1  CCAGTGTCTTCTCTCTTTGCTTTGTTTTGCTGAGTTTTAATCAGGTCACT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTCTTCTCTCTTTGCTTTGTTTTGCTGAGTTTTAATCAGGTCACT  797

seq1  GAGCGACCATGGAATTGTCCAAAATACATCCTGGTGTACCCACCAGTGTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGACCATGGAATTGTCCAAAATACATCCTGGTGTACCCACCAGTGTT  847

seq1  CAATTAGAGTTTTAATGAGCATGATTTTAAGCACTGTGTTACCACTAGCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAGAGTTTTAATGAGCATGATTTTAAGCACTGTGTTACCACTAGCC  897

seq1  TATAGCATTCTTAGCTACCAATGAATGTTCTTCTATTCCTATCATCATGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCATTCTTAGCTACCAATGAATGTTCTTCTATTCCTATCATCATGT  947

seq1  CTCCATGGGGACTTCAACTGAATTC  973
      |||||||||||||||||||||||||
seq2  CTCCATGGGGACTTCAACTGAATTC  972