BAC Information

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BAC

Clone NameB6Ng01-093B16
Chromosome4 (Build37)
Map Location 152,595,984 - 152,760,938
singlet/doubletdoublet
Overlap geneLOC100042089, Ajap1
Upstream geneAcot7, Gpr153, Hes3, Icmt, Rnf207, Rpl22, Chd5, Kcnab2, LOC100042028, Nphp4, LOC667039, Gm833
Downstream geneBC039966, A430005L14Rik, Dffb, BC046331, Lrrc47, 1190007F08Rik, Ccdc27, Trp73, Wdr8, 1200015A19Rik, Megf6, Arhgef16, Prdm16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093B16.bB6Ng01-093B16.g
ACCDH904682DH904683
length1,052599
definitionDH904682|Mus musculus domesticus DNA, BAC clone: B6Ng01-093B16, 5' end.DH904683|Mus musculus domesticus DNA, BAC clone: B6Ng01-093B16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,759,882 - 152,760,938)(152,595,984 - 152,596,582)
sequence
gaattcagataaaggcagcaggcacagggcacaactactcatggccaggt
ccctgctgagacgctgagtgtggggaaggagaggtcagggctgaagaccc
cctctctggatgcaggcgacagtcttgttgcttcagatgaatctctaagc
acctgcccaatgtccttcggtctgtctcctccagctccggccctggagcc
ttctgacctggcccttcccatgtgccgaactttgacctttgtgtgctctg
acctttgtttgacctgacctttgacctctatgtaccgacctttgacctct
gactcctcccctccaggtctggctgtgcatcagatcatcaccatcaccgt
ctccctcatcatggtcatcgctgcgctcatcacaactcttgtcttaaaaa
attggtaaggcccgggagtggtggtttgcgggggcacccagagggatctt
cacagagagccccacactttaagaccaggctctgaaacttgggatttaac
tccgttgacacaatacttggccagcttacatggaactctggcttccatcc
cagctctgtgtaccctgggtgtgttggcctgtgccagtaattccagcact
cgggaaagtagaggccagagcgttagaagttcaaggccagcctcagctac
aaagctggataacacaagaccacatttcaaataaaacagactgaaagtcc
tgagtgtcagcctacagactggcagaccatgctggtgccctgctgcaggt
ggctttcctcactgttccctttctgtaaagtggccttctttgaggctggc
cttgctgggtgtgttcatctgacacagcccaagaaaactgagagggttcc
ttgctgcctatggctcttgcagctcagatctgcctgcagtcacttggaaa
ggcatctgttgcgtgtgggccttggagtcctgatccccaggggggcagtg
tgccctgattcctagtatatgtgattacagtagggttccaacacttggac
aacctagaagaagagagggagcagaggctggtagcaaggaggattaacgg
cc
gaattcaagaggcaggaggtggctaacatcccacaactgtgcagaactgt
agggacacgggtgtgtgggggcgagcgaagtcaggatgtcatctgggtaa
ttctatgacttagctgtgtccaaacatactaattaaggaggggtgtgcat
gtcagaaaggaagtgtcgtgagtttcccccaccctgctgtgagcctgtaa
tgccgggcctcatacctcccccctttctgccagaaagagtccttcacttg
ggtgtttggctcctcctggaaaagagaaaagggtcttcaggctgggaaat
ttaaataaaaagatattctctttctaatttaatgacatctctgccagtaa
ttctgaaaccatcatttgcccacatgtttctgaaagggcttctcaaggaa
tttaaacccactatttaaaattctcattatggaaggaaatgatccctttg
gggcccagccatttttttcctttggttttctggtccctccaggtaaggat
ttcaatttagagtttcccacgtggaaactcggagctgagtcccttgcagg
tggctccctgctctgcgatgggcggtggtggttggtggtggggagaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_152759882_152760938
seq2: B6Ng01-093B16.b_48_1099 (reverse)

seq1  GGCCGTTAATCCTCCTTGCTACCTGCCTCTGGCTCCCTCTCTTCTTCTAG  50
      ||||||||||||||||||||||| |||||| |||||||||||||||||||
seq2  GGCCGTTAATCCTCCTTGCTACCAGCCTCT-GCTCCCTCTCTTCTTCTAG  49

seq1  GTTTGTCCAGTTGTTGGAACCCTACTTGTTATTCACATATACCTAGGAAT  100
      | |||||||  |||||||||||||||   || ||||||||| ||||||||
seq2  G-TTGTCCAAGTGTTGGAACCCTACT--GTAATCACATATA-CTAGGAAT  95

seq1  CAGGGCACACTGCCCCCCTGGGGATCAGGAACTCCAAGGCCCACACGCAA  150
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAGGGCACACTGCCCCCCTGGGGATCAGG-ACTCCAAGGCCCACACGCAA  144

seq1  CAGATGCCTTTCCAAGTGACTGCAGGCAGATCTGAGCTGCAAGGGCCATA  200
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CAGATGCCTTTCCAAGTGACTGCAGGCAGATCTGAGCTGCAAGAGCCATA  194

seq1  GGCAGCAAGGAACCCTCTCAGTTTTCTTGGGCTGTGTCAGATGAACACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCAAGGAACCCTCTCAGTTTTCTTGGGCTGTGTCAGATGAACACAC  244

seq1  CCAGCAAGGCCAGCCTCAAAGAAGGCCACTTTACAG-AAGGGAACAGTGA  299
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCAGCAAGGCCAGCCTCAAAGAAGGCCACTTTACAGAAAGGGAACAGTGA  294

seq1  GGAAAGCCACCTGCAGCAGGGCACCAGCATGGTCTGCCAGTCTGTAGGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCCACCTGCAGCAGGGCACCAGCATGGTCTGCCAGTCTGTAGGCT  344

seq1  GACACTCAGGACTTTCAGTCTGTTTTATTTGAAATGTGGTCTTGTGTTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTCAGGACTTTCAGTCTGTTTTATTTGAAATGTGGTCTTGTGTTAT  394

seq1  CCAGCTTTGTAGCTGAGGCTGGCCTTGAACTTCTAACGCTCTGGCCTCTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTTGTAGCTGAGGCTGGCCTTGAACTTCTAACGCTCTGGCCTCTA  444

seq1  CTTTCCCGAGTGCTGGAATTACTGGCACAGGCCAACACACCCAGGGTACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCGAGTGCTGGAATTACTGGCACAGGCCAACACACCCAGGGTACA  494

seq1  CAGAGCTGGGATGGAAGCCAGAGTTCCATGTAAGCTGGCCAAGTATTGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTGGGATGGAAGCCAGAGTTCCATGTAAGCTGGCCAAGTATTGTG  544

seq1  TCAACGGAGTTAAATCCCAAGTTTCAGAGCCTGGTCTTAAAGTGTGGGGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACGGAGTTAAATCCCAAGTTTCAGAGCCTGGTCTTAAAGTGTGGGGC  594

seq1  TCTCTGTGAAGATCCCTCTGGGTGCCCCCGCAAACCACCACTCCCGGGCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGAAGATCCCTCTGGGTGCCCCCGCAAACCACCACTCCCGGGCC  644

seq1  TTACCAATTTTTTAAGACAAGAGTTGTGATGAGCGCAGCGATGACCATGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAATTTTTTAAGACAAGAGTTGTGATGAGCGCAGCGATGACCATGA  694

seq1  TGAGGGAGACGGTGATGGTGATGATCTGATGCACAGCCAGACCTGGAGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGAGACGGTGATGGTGATGATCTGATGCACAGCCAGACCTGGAGGG  744

seq1  GAGGAGTCAGAGGTCAAAGGTCGGTACATAGAGGTCAAAGGTCAGGTCAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGTCAGAGGTCAAAGGTCGGTACATAGAGGTCAAAGGTCAGGTCAA  794

seq1  ACAAAGGTCAGAGCACACAAAGGTCAAAGTTCGGCACATGGGAAGGGCCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGTCAGAGCACACAAAGGTCAAAGTTCGGCACATGGGAAGGGCCA  844

seq1  GGTCAGAAGGCTCCAGGGCCGGAGCTGGAGGAGACAGACCGAAGGACATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGAAGGCTCCAGGGCCGGAGCTGGAGGAGACAGACCGAAGGACATT  894

seq1  GGGCAGGTGCTTAGAGATTCATCTGAAGCAACAAGACTGTCGCCTGCATC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGTGCTTAGAGATTCATCTGAAGCAACAAGACTGTCGCCTGCATC  944

seq1  CAGAGAGGGGGTCTTCAGCCCTGACCTCTCCTTCCCCACACTCAGCGTCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGGGGGTCTTCAGCCCTGACCTCTCCTTCCCCACACTCAGCGTCT  994

seq1  CAGCAGGGACCTGGCCATGAGTAGTTGTGCCCTGTGCCTGCTGCCTTTAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGGACCTGGCCATGAGTAGTTGTGCCCTGTGCCTGCTGCCTTTAT  1044

seq1  CTGAATTC  1057
      ||||||||
seq2  CTGAATTC  1052

seq1: chr4_152595984_152596582
seq2: B6Ng01-093B16.g_67_665

seq1  GAATTCAAGAGGCAGGAGGTGGCTAACATCCCACAACTGTGCAGAACTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAGGCAGGAGGTGGCTAACATCCCACAACTGTGCAGAACTGT  50

seq1  AGGGACACGGGTGTGTGGGGGCGAGCGAAGTCAGGATGTCATCTGGGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACACGGGTGTGTGGGGGCGAGCGAAGTCAGGATGTCATCTGGGTAA  100

seq1  TTCTATGACTTAGCTGTGTCCAAACATACTAATTAAGGAGGGGTGTGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGACTTAGCTGTGTCCAAACATACTAATTAAGGAGGGGTGTGCAT  150

seq1  GTCAGAAAGGAAGTGTCGTGAGTTTCCCCCACCCTGCTGTGAGCCTGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAAAGGAAGTGTCGTGAGTTTCCCCCACCCTGCTGTGAGCCTGTAA  200

seq1  TGCCGGGCCTCATACCTCCCCCCTTTCTGCCAGAAAGAGTCCTTCACTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGGGCCTCATACCTCCCCCCTTTCTGCCAGAAAGAGTCCTTCACTTG  250

seq1  GGTGTTTGGCTCCTCCTGGAAAAGAGAAAAGGGTCTTCAGGCTGGGAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTGGCTCCTCCTGGAAAAGAGAAAAGGGTCTTCAGGCTGGGAAAT  300

seq1  TTAAATAAAAAGATATTCTCTTTCTAATTTAATGACATCTCTGCCAGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAAAAAGATATTCTCTTTCTAATTTAATGACATCTCTGCCAGTAA  350

seq1  TTCTGAAACCATCATTTGCCCACATGTTTCTGAAAGGGCTTCTCAAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAACCATCATTTGCCCACATGTTTCTGAAAGGGCTTCTCAAGGAA  400

seq1  TTTAAACCCACTATTTAAAATTCTCATTATGGAAGGAAATGATCCCTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACCCACTATTTAAAATTCTCATTATGGAAGGAAATGATCCCTTTG  450

seq1  GGGCCCAGCCATTTTTTTCCTTTGGTTTTCTGGTCCCTCCAGGTAAGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCAGCCATTTTTTTCCTTTGGTTTTCTGGTCCCTCCAGGTAAGGAT  500

seq1  TTCAATTTAGAGTTTCCCACGTGGAAACTCGGAGCTGAGTCCCTTGCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTTAGAGTTTCCCACGTGGAAACTCGGAGCTGAGTCCCTTGCAGG  550

seq1  TGGCTCCCTGCTCTGCGATGGGCGGTGGTGGTTGGTGGTGGGGAGAGCA  599
      |||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGGCTCCCTGCTCTGCGATGGGCGGTGGTGGTTGGTGGTGGGGAGAACA  599