BAC Information

Click to search

BAC

Clone NameB6Ng01-093C16
Chromosome4 (Build37)
Map Location 40,137,376 - 40,226,733
singlet/doubletdoublet
Overlap geneAco1, Ddx58, Topors, Ndufb6
Upstream gene1700009N14Rik, LOC435775, LOC329824, LOC621880, LOC384007
Downstream gene4930509K18Rik, A930001M12Rik, Aptx, LOC665630, LOC622208, Dnaja1, Smu1, LOC100042305, B4galt1, LOC100039668, Spink4, Bag1, Chmp5, Nfx1, Aqp7, Aqp3, Nol6, Ube2r2, Ubap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093C16.bB6Ng01-093C16.g
ACCDH904726DH904727
length1,159951
definitionDH904726|Mus musculus domesticus DNA, BAC clone: B6Ng01-093C16, 5' end.DH904727|Mus musculus domesticus DNA, BAC clone: B6Ng01-093C16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,225,566 - 40,226,733)(40,137,376 - 40,138,329)
sequence
gaattcaagggggcgaggcagaggttcgctaaaccatcgtccttgttctt
ccggtcccctcccctacaagttctttctctgaaccctagccccaggactt
ctcacactttccaacaccgcccacttagttcttaactcagggaccttcct
gagctcatacttaacccaggttgttaaaacccagggtccaagagagggct
ttgcgcatgagcagagcctgctttccgcgaaggagtcggcccgcccccag
aggcggggctggtgtggcgtcatcactccgcgccgcttccaggcgcctca
aggtcgctttgcggagcgggaggggcaggtcagtgaccggtcctgtgtag
gctcgtcggcaacatgtcagggtacacgccggatgagaagctgcggctgc
agcagctgcgggagctaaggagacgatggctgaaggaccaggagctgagt
ccccgggagcccgtgttgcccccgcgcaggatgtggcccctggagcgatt
ctgggataactttttgcgggacggggccgtgtggaagaacatggtgagtg
atgagccacacgggtgtccgggttcccaccccgggtcgcagcctggccaa
gcctcccagcccactcctctcagttccatcaaggcccaaccctgtccaga
gcccgcatacccgggagggccccaagggacaatcagtccaggggctcagg
tttagcggagacgctgtcaggtcgctattgttcagggctggggtctggag
tccaggagcaggtggctgtcaggtgtactgagaagtcgggtcttaggttt
tacaagacgctcgccgcacatgcagttctttcgagtgtagataccttttc
tcgggttaaactggtcagaattaactgagatcacaggctgtgatttcagt
atttgagaacacttacgcgtgggtagggttgaggtgccagagactggcca
gctggtatagtacagccccatgggtcgcaacagaagacaggtcttatttg
gtatgctttgtcagacactaaagctccctttctacgccatcactgtgtac
gtttacacaccttagtaactttaaattgcattcccatgtacctcagccag
aaaaccgttcctcaggacctgctttttattgcagaatcccagattttctt
ggtgactgc
gaattcactgcttcccttggcctgtaggccctgattattcagggcaaatt
caggcccacgtgtagtcagtggagcatatcccgttgccctccattctctg
atccatcctgctggcctccctattgcttttaattcagttttcacttaggt
gtagctgtgtgagcttcccgctgagttaagaggagatccagatcctcttg
agttgatcccagggagtatggattcctgctctactctgctcctgcctgcc
tgacccagttaaggctttgagaacaacctgcgtgcagagcagtgtctggc
agattcagtgacgtgcctgggtttatggctttttctttttggtccatgtg
taagctaagttcactcttcactcacgtgctacatcttttattagcctaac
accacgagagttcaactcctatggctcccgccggggtaacgacgccatca
tggcccgggggacatttgccaacattcgcttgctgaacaagtttctgaac
aagcaggcacctcagactgtccatctcccctcaggagaaaccgtgagtat
cagaaaccagtgtctgtcaggctctgacgcctcttcttcatggtggcctt
ccttatcttcacagcctgcctgacttcctactgtttcctcttgctgggtg
tccatatgtgtcccatttatcacggtagacattacaatctcctgttggtt
tagtggatggacaccagagttcaactaagactcatttcctggaagttgag
ctttaaaaaaaaaatatctctgagcaaaatttcatctgtgttaaagtact
tgaggtataattccagattatttaggatatttatcaagaagggctaattg
tcttttccattgcatccgcagcagaaggaaggcccatggggggccctttg
agttgcccagccctaaagaccttttgaagctggtgtatacgtggagttgt
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_40225566_40226733
seq2: B6Ng01-093C16.b_44_1202 (reverse)

seq1  GCAGTCTCCAAGAAAATATCTGGAATCCTTACAATAAAAAGCAGTCCTTG  50
      |||||| ||||||||  |||||| || | | |||||||||||||  | ||
seq2  GCAGTCACCAAGAAA--ATCTGGGATTC-TGCAATAAAAAGCAGGTCCTG  47

seq1  AGTGAACGGTTTTTCTGCCTGGAGGT-CAT-GGAATGCAATTTAAAAGTA  98
      || |||||| ||||||| || ||||| ||| |||||||||||| ||||| 
seq2  AG-GAACGG-TTTTCTGGCT-GAGGTACATGGGAATGCAATTT-AAAGTT  93

seq1  ACTAAAAGTGTGTTAAACGTACACAGTGAT-GCGTAGAAAGGGAGCTTTA  147
      ||| || ||||| ||||||||||||||||| |||||||||||||||||||
seq2  ACT-AAGGTGTG-TAAACGTACACAGTGATGGCGTAGAAAGGGAGCTTTA  141

seq1  GAGTCTGACAAAGCATACCAAATAGAACCCTGTCTTCTGTTGCGACCCCA  197
      | |||||||||||||||||||||| |  ||||||||||||||||| ||||
seq2  GTGTCTGACAAAGCATACCAAATA-AGACCTGTCTTCTGTTGCGA-CCCA  189

seq1  TGGGGCTGTACTATACCAGCTGGCCAGTCTCTGGCACCTCAACCCTACCC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTGTACTATACCAGCTGGCCAGTCTCTGGCACCTCAACCCTACCC  239

seq1  ACCGCGTAAGTGTTCTCAAATACTGAAATCACAGCCTGTGATCTCAGTTA  297
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-CGCGTAAGTGTTCTCAAATACTGAAATCACAGCCTGTGATCTCAGTTA  288

seq1  ATTCTGACCAGTTTAACCCGAGAAAAGGTATCTACACTCGAAAGAACTGC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGACCAGTTTAACCCGAGAAAAGGTATCTACACTCGAAAGAACTGC  338

seq1  ATGTGCGGCGAGCGTCTTGTAAAACCTAAGACCCGACTTCTCAGTACACC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCGGCGAGCGTCTTGTAAAACCTAAGACCCGACTTCTCAGTACACC  388

seq1  TGACAGCCACCTGCTCCTGGACTCCAGACCCCAGCCCTGAACAATAGCGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCCACCTGCTCCTGGACTCCAGACCCCAGCCCTGAACAATAGCGA  438

seq1  CCTGACAGCGTCTCCGCTAAACCTGAGCCCCTGGACTGATTGTCCCTTGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACAGCGTCTCCGCTAAACCTGAGCCCCTGGACTGATTGTCCCTTGG  488

seq1  GGCCCTCCCGGGTATGCGGGCTCTGGACAGGGTTGGGCCTTGATGGAACT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTCCCGGGTATGCGGGCTCTGGACAGGGTTGGGCCTTGATGGAACT  538

seq1  GAGAGGAGTGGGCTGGGAGGCTTGGCCAGGCTGCGACCCGGGGTGGGAAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAGTGGGCTGGGAGGCTTGGCCAGGCTGCGACCCGGGGTGGGAAC  588

seq1  CCGGACACCCGTGTGGCTCATCACTCACCATGTTCTTCCACACGGCCCCG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGACACCCGTGTGGCTCATCACTCACCATGTTCTTCCACACGGCCCCG  638

seq1  TCCCGCAAAAAGTTATCCCAGAATCGCTCCAGGGGCCACATCCTGCGCGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGCAAAAAGTTATCCCAGAATCGCTCCAGGGGCCACATCCTGCGCGG  688

seq1  GGGCAACACGGGCTCCCGGGGACTCAGCTCCTGGTCCTTCAGCCATCGTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAACACGGGCTCCCGGGGACTCAGCTCCTGGTCCTTCAGCCATCGTC  738

seq1  TCCTTAGCTCCCGCAGCTGCTGCAGCCGCAGCTTCTCATCCGGCGTGTAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAGCTCCCGCAGCTGCTGCAGCCGCAGCTTCTCATCCGGCGTGTAC  788

seq1  CCTGACATGTTGCCGACGAGCCTACACAGGACCGGTCACTGACCTGCCCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACATGTTGCCGACGAGCCTACACAGGACCGGTCACTGACCTGCCCC  838

seq1  TCCCGCTCCGCAAAGCGACCTTGAGGCGCCTGGAAGCGGCGCGGAGTGAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGCTCCGCAAAGCGACCTTGAGGCGCCTGGAAGCGGCGCGGAGTGAT  888

seq1  GACGCCACACCAGCCCCGCCTCTGGGGGCGGGCCGACTCCTTCGCGGAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCCACACCAGCCCCGCCTCTGGGGGCGGGCCGACTCCTTCGCGGAAA  938

seq1  GCAGGCTCTGCTCATGCGCAAAGCCCTCTCTTGGACCCTGGGTTTTAACA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCTCTGCTCATGCGCAAAGCCCTCTCTTGGACCCTGGGTTTTAACA  988

seq1  ACCTGGGTTAAGTATGAGCTCAGGAAGGTCCCTGAGTTAAGAACTAAGTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGTTAAGTATGAGCTCAGGAAGGTCCCTGAGTTAAGAACTAAGTG  1038

seq1  GGCGGTGTTGGAAAGTGTGAGAAGTCCTGGGGCTAGGGTTCAGAGAAAGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGTGTTGGAAAGTGTGAGAAGTCCTGGGGCTAGGGTTCAGAGAAAGA  1088

seq1  ACTTGTAGGGGAGGGGACCGGAAGAACAAGGACGATGGTTTAGCGAACCT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTAGGGGAGGGGACCGGAAGAACAAGGACGATGGTTTAGCGAACCT  1138

seq1  CTGCCTCGCCCCCTTGAATTC  1168
      |||||||||||||||||||||
seq2  CTGCCTCGCCCCCTTGAATTC  1159

seq1: chr4_40137376_40138329
seq2: B6Ng01-093C16.g_71_1021

seq1  GAATTCACTGCTTCCCTTGGCCTGTAGGCCCTGATTATTCAGGGCAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGCTTCCCTTGGCCTGTAGGCCCTGATTATTCAGGGCAAATT  50

seq1  CAGGCCCACGTGTAGTCAGTGGAGCATATCCCGTTGCCCTCCATTCTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCCACGTGTAGTCAGTGGAGCATATCCCGTTGCCCTCCATTCTCTG  100

seq1  ATCCATCCTGCTGGCCTCCCTATTGCTTTTAATTCAGTTTTCACTTAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCCTGCTGGCCTCCCTATTGCTTTTAATTCAGTTTTCACTTAGGT  150

seq1  GTAGCTGTGTGAGCTTCCCGCTGAGTTAAGAGGAGATCCAGATCCTCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTGTGTGAGCTTCCCGCTGAGTTAAGAGGAGATCCAGATCCTCTTG  200

seq1  AGTTGATCCCAGGGAGTATGGATTCCTGCTCTACTCTGCTCCTGCCTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGATCCCAGGGAGTATGGATTCCTGCTCTACTCTGCTCCTGCCTGCC  250

seq1  TGACCCAGTTAAGGCTTTGAGAACAACCTGCGTGCAGAGCAGTGTCTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCAGTTAAGGCTTTGAGAACAACCTGCGTGCAGAGCAGTGTCTGGC  300

seq1  AGATTCAGTGACGTGCCTGGGTTTATGGCTTTTTCTTTTTGGTCCATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCAGTGACGTGCCTGGGTTTATGGCTTTTTCTTTTTGGTCCATGTG  350

seq1  TAAGCTAAGTTCACTCTTCACTCACGTGCTACATCTTTTATTAGCCTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTAAGTTCACTCTTCACTCACGTGCTACATCTTTTATTAGCCTAAC  400

seq1  ACCACGAGAGTTCAACTCCTATGGCTCCCGCCGGGGTAACGACGCCATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACGAGAGTTCAACTCCTATGGCTCCCGCCGGGGTAACGACGCCATCA  450

seq1  TGGCCCGGGGGACATTTGCCAACATTCGCTTGCTGAACAAGTTTCTGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCGGGGGACATTTGCCAACATTCGCTTGCTGAACAAGTTTCTGAAC  500

seq1  AAGCAGGCACCTCAGACTGTCCATCTCCCCTCAGGAGAAACCGTGAGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGCACCTCAGACTGTCCATCTCCCCTCAGGAGAAACCGTGAGTAT  550

seq1  CAGAAACCAGTGTCTGTCAGGCTCTGACGCCTCTTCTTCATGGTGGCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACCAGTGTCTGTCAGGCTCTGACGCCTCTTCTTCATGGTGGCCTT  600

seq1  CCTTATCTTCACAGCCTGCCTGACTTCCTACTG-TTCCTCTTGCTGGGTG  649
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCTTATCTTCACAGCCTGCCTGACTTCCTACTGTTTCCTCTTGCTGGGTG  650

seq1  TCCATATGTGTCCCATTTATCACGGTAGACATTACAATCTCCTGTTGG-T  698
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCCATATGTGTCCCATTTATCACGGTAGACATTACAATCTCCTGTTGGTT  700

seq1  TAGTGGATGGACACCAGAGTTCAACTAAGACTCATTTCCTGGAAGTTGAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGATGGACACCAGAGTTCAACTAAGACTCATTTCCTGGAAGTTGAG  750

seq1  CTTTAAAAAAAAAATATCTCTGAGCAAAATTTCATCTGTGTTTAAAGTAC  798
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTTTAAAAAAAAAATATCTCTGAGCAAAATTTCATCTGTG-TTAAAGTAC  799

seq1  TTGAGGTATAAATTCCAGATTATTTAGGATATTTATCAAG-AGGGCTATT  847
      ||||||||| |||||||||||||||||||||||||||||| ||||||| |
seq2  TTGAGGTAT-AATTCCAGATTATTTAGGATATTTATCAAGAAGGGCTAAT  848

seq1  GTTCTTTTCCATTGCATCCGCAGCAGAAGGAAGGGCCATGGGGGGCCCTT  897
        |||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGTCTTTTCCATTGCATCCGCAGCAGAAGGAAGGCCCATGGGGGGCCCTT  898

seq1  TGAGGTTTGCCCAGCCCCGAAGGAGCTTTTTGAAGCTGGTGTATACGTGG  947
      ||||  |||||||||||  |||   | |||||||||||||||||||||||
seq2  TGAG--TTGCCCAGCCCTAAAG--ACCTTTTGAAGCTGGTGTATACGTGG  944

seq1  AGTTGTT  954
      |||||||
seq2  AGTTGTT  951