BAC Information

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BAC

Clone NameB6Ng01-093E03
Chromosome4 (Build37)
Map Location 49,442,789 - 49,443,962
singlet/doubletsinglet
Overlap geneRbpsuh-ps2
Upstream geneInvs, Tex10, 5730528L13Rik, Tmeff1, 2310039E09Rik, E130309F12Rik, LOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617
Downstream geneLOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2, LOC666663
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093E03.bB6Ng01-093E03.g
ACCDH904794DH904795
length1,1641,075
definitionDH904794|Mus musculus domesticus DNA, BAC clone: B6Ng01-093E03, 5' end.DH904795|Mus musculus domesticus DNA, BAC clone: B6Ng01-093E03, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctacttggtcttcgctcctctgttctctcccatcccattttct
cccaggtttgcagtcccccttgcacccacgaataactgtgtcctactgga
cgggacacaggagatgaatgtaaaatgctctccactgttgttaactggag
tggaaatctcctccttctacatgcaggtatcttgtactaactgtctgggg
tgtaatgcaattgaacagtgccaccttcgtcctcgaggcaatacacaagc
cagcatttttcaatgactgctctttttggagtttttggagatgaccttta
tctgcttgctgaggaacacaccagtgtcatcactgttgccatagaacatc
tttacagacaacatgaaatattttctcttgtctgaatcaggtatgtacaa
tgttttggctgtatagtagttcttcccttccaagttcagctgctgcattt
cttggtcacaatttcctattccaataaactcacagggttgagactcttgt
tcagaacaatcatttcattccaattgttctttttctttttttcttccaac
cactgcccataaaatacacacaaagaggagggcaaaaaatctttctaatt
tctgtacagtttctgtgaaacttatgcatgaagaatgagttttgtttgat
cccctcattcttttaaataattttgcatagcttccctagtgagtcgttta
ggtggaggctgttcaccaaactttccagatgatggagcatgtgcaggctc
ttcctttttcggtgagcactccaagtagtccagggggagagctctggtta
tccgggttttgggacacaccctctgggacatatgtggagactgaggaaaa
ctggagggcctaactatggggaccaggaatagaggggctactttatgtct
tttatagatgagttgagtccattaatattgagagatattaaagacaggta
atgttagttcctgtatgtttgttttgtagtggtattatgtgcatgtggtt
ctcttttttggcactgctggtgagatgattaatcccatattcctttggtg
taggtacccttcttctcggtggagatttccttcaggatcctctgtaagac
tgaatggatagaaagaaacctgtttgaatttggtttgtctgaaattttgg
gcttctatctatgt
gaattctcacctgaggaataatgagtggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggtgaggatgtggagaaagaggaacactcctccgttttttggt
gggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctc
agaaaattggacatagtactaccagaggatccaggaatacccctcctggg
catatatccagatgatgtcccaaccggtaagaaggacacatgttccactg
tgttcatagcagccttatttataatagccagaagctggaaagaacccaga
tgcccctcaacagaggaatggatacagaaaatgtggtacatttatacaat
ggagtactactcagctattaaaaagaatgaatttatgaaattcctaggca
aatggatggactggagggcatcatcctgagtgaggtaacccaatcacaaa
agaactcacatgatatgtactcactgataagtggatattagccgagatac
ttaaaataaccaagatataagatacaatttgtgaatctcataaaactcaa
gaagaatgaaaaccaaagtgtggacacgttgccccttgttagaattggga
acaaaatacccatgaaaggagttacagagacaaagtttggagctgagacg
aaagaacagaccatctagagactgccatatccggggatccatcacacaat
cagcctccaaaccctgacaccattgcatacactagcaagttttgctgaag
gacctgatatagctgtctcttgtgagatatgccggtgcctagcaaacaca
gaaatggaagctcactgtaagctatggatggatcacagggccccaatgga
ggagctagagaaagtacccagtcggccatcagtggaagaagaggccgttg
gcgtgcaactttataccctcatatggggaccccaggccaaaattggagtg
tgcacgttcgtatttcttcttctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_49442789_49443962
seq2: B6Ng01-093E03.b_46_1209 (reverse)

seq1  ACATAGATGAAAAAACCAAAATATTTCAAGACAAAACCAAATTCAAACA-  49
      ||||||||  | || || ||| ||||| |||| |||||||||||||||| 
seq2  ACATAGAT--AGAAGCCCAAA-ATTTC-AGAC-AAACCAAATTCAAACAG  45

seq1  GTATCTATCTACCAATCCAGTCTTACAGAGGATTCTAGAAGGAAAACTCC  99
      || ||| |||| | || |||||||||||||||| || |||||||| ||||
seq2  GTTTCTTTCTATCCATTCAGTCTTACAGAGGATCCT-GAAGGAAATCTCC  94

seq1  AAC-AGAAGAAGGGTACCTACACCAAAGAAATAATGAGATTAATCATCTC  148
      | | |||||||||||||||||||||||| ||| ||| |||||||||||||
seq2  ACCGAGAAGAAGGGTACCTACACCAAAGGAAT-ATGGGATTAATCATCTC  143

seq1  A-CAGCAGTGCCAAAAAAAGAGAACCACATGCACATAATACCACCTACAA  197
      | |||||||||| |||||||||||||||||||||||||||||| |||| |
seq2  ACCAGCAGTGCC-AAAAAAGAGAACCACATGCACATAATACCA-CTAC-A  190

seq1  AAACAAACATAACAGGAACTAACAATTACCTGTCTTTAATATCTCTCAAT  247
      |||||||||| |||||||||||| ||||||||||||||||||||||||||
seq2  AAACAAACAT-ACAGGAACTAAC-ATTACCTGTCTTTAATATCTCTCAAT  238

seq1  ATTAATGGACTCAACTCATCTATAAAAAGACATAAAGTAGCCCCTCTATT  297
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATTAATGGACTCAACTCATCTAT-AAAAGACATAAAGTAGCCCCTCTATT  287

seq1  CCTGGTCCCCATAGTTAGGCCCTCCAGTTTTCCTCAGTCTCCACATATGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCCCCATAGTTAGGCCCTCCAGTTTTCCTCAGTCTCCACATATGT  337

seq1  CCCAGAGGGTGTGTCCCAAAACCCGGATAACCAGAGCTCTCCCCCTGGAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGGGTGTGTCCCAAAACCCGGATAACCAGAGCTCTCCCCCTGGAC  387

seq1  TACTTGGAGTGCTCACCGAAAAAGGAAGAGCCTGCACATGCTCCATCATC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGGAGTGCTCACCGAAAAAGGAAGAGCCTGCACATGCTCCATCATC  437

seq1  TGGAAAGTTTGGTGAACAGCCTCCACCTAAACGACTCACTAGGGAAGCTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGTTTGGTGAACAGCCTCCACCTAAACGACTCACTAGGGAAGCTA  487

seq1  TGCAAAATTATTTAAAAGAATGAGGGGATCAAACAAAACTCATTCTTCAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAATTATTTAAAAGAATGAGGGGATCAAACAAAACTCATTCTTCAT  537

seq1  GCATAAGTTTCACAGAAACTGTACAGAAATTAGAAAGATTTTTTGCCCTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAGTTTCACAGAAACTGTACAGAAATTAGAAAGATTTTTTGCCCTC  587

seq1  CTCTTTGTGTGTATTTTATGGGCAGTGGTTGGAAGAAAAAAAGAAAAAGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGTGTGTATTTTATGGGCAGTGGTTGGAAGAAAAAAAGAAAAAGA  637

seq1  ACAATTGGAATGAAATGATTGTTCTGAACAAGAGTCTCAACCCTGTGAGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTGGAATGAAATGATTGTTCTGAACAAGAGTCTCAACCCTGTGAGT  687

seq1  TTATTGGAATAGGAAATTGTGACCAAGAAATGCAGCAGCTGAACTTGGAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGGAATAGGAAATTGTGACCAAGAAATGCAGCAGCTGAACTTGGAA  737

seq1  GGGAAGAACTACTATACAGCCAAAACATTGTACATACCTGATTCAGACAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAACTACTATACAGCCAAAACATTGTACATACCTGATTCAGACAA  787

seq1  GAGAAAATATTTCATGTTGTCTGTAAAGATGTTCTATGGCAACAGTGATG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAATATTTCATGTTGTCTGTAAAGATGTTCTATGGCAACAGTGATG  837

seq1  ACACTGGTGTGTTCCTCAGCAAGCAGATAAAGGTCATCTCCAAAAACTCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGTGTGTTCCTCAGCAAGCAGATAAAGGTCATCTCCAAAAACTCC  887

seq1  AAAAAGAGCAGTCATTGAAAAATGCTGGCTTGTGTATTGCCTCGAGGACG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAGCAGTCATTGAAAAATGCTGGCTTGTGTATTGCCTCGAGGACG  937

seq1  AAGGTGGCACTGTTCAATTGCATTACACCCCAGACAGTTAGTACAAGATA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGCACTGTTCAATTGCATTACACCCCAGACAGTTAGTACAAGATA  987

seq1  CCTGCATGTAGAAGGAGGAGATTTCCACTCCAGTTAACAACAGTGGAGAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATGTAGAAGGAGGAGATTTCCACTCCAGTTAACAACAGTGGAGAG  1037

seq1  CATTTTACATTCATCTCCTGTGTCCCGTCCAGTAGGACACAGTTATTCGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTACATTCATCTCCTGTGTCCCGTCCAGTAGGACACAGTTATTCGT  1087

seq1  GGGTGCAAGGGGGACTGCAAACCTGGGAGAAAATGGGATGGGAGAGAACA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCAAGGGGGACTGCAAACCTGGGAGAAAATGGGATGGGAGAGAACA  1137

seq1  GAGGAGCGAAGACCAAGTAGAGAATTC  1174
      |||||||||||||||||||||||||||
seq2  GAGGAGCGAAGACCAAGTAGAGAATTC  1164