BAC Information

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BAC

Clone NameB6Ng01-093F22
Chromosome4 (Build37)
Map Location 88,327,162 - 88,419,010
singlet/doubletdoublet
Overlap geneIfna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147
Upstream geneMllt3, BC057079, Ptplad2, Ifnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275
Downstream geneOTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5, Ifna4, Ifna1, Ifne1, LOC100040617, Mtap, LOC625574, Cdkn2a, Cdkn2b, LOC664785, Dmrta1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093F22.bB6Ng01-093F22.g
ACCDH904879DH904880
length199982
definitionDH904879|Mus musculus domesticus DNA, BAC clone: B6Ng01-093F22, 5' end.DH904880|Mus musculus domesticus DNA, BAC clone: B6Ng01-093F22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,418,812 - 88,419,010)(88,327,162 - 88,328,131)
sequence
atgcggtcacgttttcagcagcttccttcacgtattactctgaccaggta
gctagggttttggagaggttttgttttctattgccaaaaattcccacacc
accccgcagccagaataggtaatccaacgtccttcattctcttctggaat
cctgagaaagatgtcttatgtgactcctgttttgggggtggggggtggg
gaattcagtgattattcttccatgcccattgtgtctaatggcatagatgt
tcagttgcttgtgacagacagcaagggtttttagtccctcaactgtctgt
actttcccatttacactttcttctttcctgaggtgttggtttcatgttcg
atgtctccaattctgttctctacactcctagaaagaaaaccttgatgctg
gtttgtggcactgagccaaaaatatgatgtcgatggaaatgaaagctgaa
aaaggaactgatgtgtcatctaaaagacaaagtagtagcttatgttaggt
actaagacgataagggcaagctttgtggccattagtaagataatgtgatg
aaagtgactaagctttctggtgataaatgcaatccacataacactttcag
taaaattaatctcagaagtgtcatgtttaaaatacattggagccatgaag
gtaacaaagaatgaaagcagtgctgtgttcaaactgtcacaatacctgat
ttgaaattagagttacattatagagagggttcctgtgcagaccaacactt
accacagatccaagctagtgaacagagagactcacaactggtcactgaca
gaaaatgaaggggctgacttcttggcttcaaggatcactgaagaaagagg
gagtagaagaattggaagagcaagaggcagtggatgacagcagcaaagct
atgttcttagacacaacagggtagtttattcatgtgaactgagagtggct
acgactgaatgaacaagacccaagcccagacaaaacatcagtttggaaaa
tagaggctattccaacctccagtttgaggaactatgttcaactgatgagt
tgttgggagaacgagattcaggtattcctcaggaaggggctctgagagcg
cttaccaatgctcctagagatggtgctgtaccctgctcaagaatgatgaa
gcaatactagcaagaataagaatggatgatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_88418812_88419010
seq2: B6Ng01-093F22.b_53_251 (reverse)

seq1  CCCACCCCCCACCCCCAAAACAGGAGTCACATAAGACATCTTTCTCAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCCCCACCCCCAAAACAGGAGTCACATAAGACATCTTTCTCAGGA  50

seq1  TTCCAGAAGAGAATGAAGGACGTTGGATTACCTATTCTGGCTGCGGGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAAGAGAATGAAGGACGTTGGATTACCTATTCTGGCTGCGGGGTG  100

seq1  GTGTGGGAATTTTTGGCAATAGAAAACAAAACCTCTCCAAAACCCTAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGAATTTTTGGCAATAGAAAACAAAACCTCTCCAAAACCCTAGCT  150

seq1  ACCTGGTCAGAGTAATACGTGAAGGAAGCTGCTGAAAACGTGACCGCAT  199
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGTCAGAGTAATACGTGAAGGAAGCTGCTGAAAACGTGACCGCAT  199

seq1: chr4_88327162_88328131
seq2: B6Ng01-093F22.g_70_1051

seq1  GAATTCAGTGATTATTCTTCCATGCCCATTGTGTCTAATGGCATAGATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGATTATTCTTCCATGCCCATTGTGTCTAATGGCATAGATGT  50

seq1  TCAGTTGCTTGTGACAGACAGCAAGGGTTTTTAGTCCCTCAACTGTCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGCTTGTGACAGACAGCAAGGGTTTTTAGTCCCTCAACTGTCTGT  100

seq1  ACTTTCCCATTTACACTTTCTTCTTTCCTGAGGTGTTGGTTTCATGTTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCCATTTACACTTTCTTCTTTCCTGAGGTGTTGGTTTCATGTTCG  150

seq1  ATGTCTCCAATTCTGTTCTCTACACTCCTAGAAAGAAAACCTTGATGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTCCAATTCTGTTCTCTACACTCCTAGAAAGAAAACCTTGATGCTG  200

seq1  GTTTGTGGCACTGAGCCAAAAATATGATGTCGATGGAAATGAAAGCTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGGCACTGAGCCAAAAATATGATGTCGATGGAAATGAAAGCTGAA  250

seq1  AAAGGAACTGATGTGTCATCTAAAAGACAAAGTAGTAGCTTATGTTAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAACTGATGTGTCATCTAAAAGACAAAGTAGTAGCTTATGTTAGGT  300

seq1  ACTAAGACGATAAGGGCAAGCTTTGTGGCCATTAGTAAGATAATGTGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGACGATAAGGGCAAGCTTTGTGGCCATTAGTAAGATAATGTGATG  350

seq1  AAAGTGACTAAGCTTTCTGGTGATAAATGCAATCCACATAACACTTTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGACTAAGCTTTCTGGTGATAAATGCAATCCACATAACACTTTCAG  400

seq1  TAAAATTAATCTCAGAAGTGTCATGTTTAAAATACATTGGAGCCATGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTAATCTCAGAAGTGTCATGTTTAAAATACATTGGAGCCATGAAG  450

seq1  GTAACAAAGAATGAAAGCAGTGCTGTGTTCAAACTGTCACAATACCTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAAAGAATGAAAGCAGTGCTGTGTTCAAACTGTCACAATACCTGAT  500

seq1  TTGAAATTAGAGTTACATTATAGAGAGGGTTCCTGTGCAGACCAACACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATTAGAGTTACATTATAGAGAGGGTTCCTGTGCAGACCAACACTT  550

seq1  ACCACAGATCCAAGCTAGTGAACAGAGAGACTCACAACTGGTCACTGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGATCCAAGCTAGTGAACAGAGAGACTCACAACTGGTCACTGACA  600

seq1  GAAAATGAA-GGGCTGACTTCTTGGCTTCAAGGATCACTGAAG-AAGAGG  648
      ||||||||| ||||||||||||||||||||||||||||||||| ||||||
seq2  GAAAATGAAGGGGCTGACTTCTTGGCTTCAAGGATCACTGAAGAAAGAGG  650

seq1  GAGTAGAAGAATTGGAAGAGCAAGAGGCAGTGGATGACAGCAGCAAAGCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGAAGAATTGGAAGAGCAAGAGGCAGTGGATGACAGCAGCAAAGCT  700

seq1  ATGTTCTTAGACACAACAGGGTAG-TTATTCATGTGAACTGAGAGTGGCT  747
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATGTTCTTAGACACAACAGGGTAGTTTATTCATGTGAACTGAGAGTGGCT  750

seq1  ACGACTGAATGAACAAGA-CCAAG-CCAGACAAAACATCAGCTTGGAAAA  795
      |||||||||||||||||| ||||| |||||||||||||||| ||||||||
seq2  ACGACTGAATGAACAAGACCCAAGCCCAGACAAAACATCAGTTTGGAAAA  800

seq1  TAGAGGCAATTCC-ACCTCCAG-TTGAGGAACTATG-TCAACTGATGAG-  841
      ||||||| ||||| |||||||| ||||||||||||| |||||||||||| 
seq2  TAGAGGCTATTCCAACCTCCAGTTTGAGGAACTATGTTCAACTGATGAGT  850

seq1  TGTTGGGAGAACGAGATTCAGGTA-TCCTCAGGAAGGGGCTCTGAGAGCG  890
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGTTGGGAGAACGAGATTCAGGTATTCCTCAGGAAGGGGCTCTGAGAGCG  900

seq1  GCTACCCATGCTCCAGGAGATGGTGCTGTACCCTGCTCAAAGAAGATGAA  940
        |||| |||||||  ||||||||||||||||||||||||  | ||||||
seq2  CTTACCAATGCTCCTAGAGATGGTGCTGTACCCTGCTCAAGAATGATGAA  950

seq1  GCAAAAGTAGC-AGGATAAGAAT-GATGATGG  970
      |||| | |||| || |||||||| ||||||||
seq2  GCAATACTAGCAAGAATAAGAATGGATGATGG  982