BAC Information

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BAC

Clone NameB6Ng01-093J21
Chromosome4 (Build37)
Map Location 146,676,232 - 146,823,214
singlet/doubletdoublet
Overlap geneLOC666581, EG666588, LOC627701
Upstream geneLOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574
Downstream geneOTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093J21.bB6Ng01-093J21.g
ACCDH905056DH905057
length1,011761
definitionDH905056|Mus musculus domesticus DNA, BAC clone: B6Ng01-093J21, 5' end.DH905057|Mus musculus domesticus DNA, BAC clone: B6Ng01-093J21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,822,203 - 146,823,214)(146,676,232 - 146,676,989)
sequence
gaattcttctaagcccacctacttatgtaccttttaattaattagcttcc
cacttcttcacagcaatttttgtttttttggatttttgcttgcttgcttc
cttgcttgcttgcttgttcctttgcttttaatttttctttttcttaaact
catctaatcgtgcaggaatcccacactccccatcaggaaccactcctcca
actctgttgccttccacacaactccccaggacctactctgcacagcttct
tcacaaagttgctgccagactagaccagagctggatgtagtaggacactg
cacctgggttctgaacccttcagatacaatggatcctgtctaacttctca
tattgtgcgtgtagccttctgggctataaatgcaaaaaattaagcagtcc
ctttgaactctgatgctcagaacagatacccaaaacaaacaaaaacgtag
ataaaatgtccttggctcaaaccacaaaccatagaggtatccaataagga
gcacaatttatgtgatacccaagacaaagaattgaaaacccacagtcatg
atcaagggcattaaagtttgtaaaccatgtgaatccactcagacaggaac
aaaatgaatcttgggtaagaaaataataccagatgcctgaaggaaataag
gacaatataaaatattaaaattgagttcaataggtggttagaaatgctaa
aaaaagaaaaatcctgaagagaaaatgcactgaggcaaataaaattgata
catagagaacctgtgggagacagattatcagacttaaagaaaaagtagag
gaggtggatgcctcaatcaaagaaaatggtgaattaaaatgatgttaggt
caaggcacaatattatttactgcttgaaggatgaggcaataaagagaaac
tccttcgaaaaactgtcctgatctttgtcaaaaaaaaaaaaaagtaagga
aaggaagtaagaaggaagaaagagagagaaagagagagagggagagagag
agagaagagag
gaattctggagatgtctcacacctgatcgcttgtaagaaaaaatgctaac
atccaattcctgggacaagaattggagggtagaatttcttgatggaaaaa
gtgatgtagggaatagaaagcaggtggaagtgatttatgagagacagaga
agagaacagataaatgggaacaggggcagagaggtaaagagcaagatacg
cataaagtcataggcttgaatagtctgaaatttgaatgatcattggtaaa
ctgctccaatgaaaggcctatgctttaaattatatagaaacctccttctc
ataatttataacactggtgtatccaccagtactcacactacactcatgta
catatgcaatgtgcatatatatatatatatatatatatatatatatatat
atatatatacacatatgtatatatacacacatatatatacatatgtatat
atatacatatgtatatatgtgtgtgtatatatgtatatatataaatacat
atatatacatatatatatatataaatctttatatatgggtgttgagggta
tttaagtgagatgtgatagtgattggttatacacatatatatcataacat
cattgtacttgcatatttttggaggaaaggacaattttagatcaatgtct
ttttgggtggatctatatatacattcacttttttgtagatagaaagccct
ttcccaaaaccatactctggaacataaaaccaatgtgcttggagggcaca
ttctatgacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146822203_146823214
seq2: B6Ng01-093J21.b_46_1056 (reverse)

seq1  CTCTCTTCTCTCTCTCTCTCCCTCTCTCTCTTTCTCTCTCTTTCTTCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTCTCTCTCTCTCTCCCTCTCTCTCTTTCTCTCTCTTTCTTCCTT  50

seq1  CTTACTTCCTTTCCTTACTTTTTTTTTTTTTTTGACAAAGATCAGGACAG  100
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTTACTTCCTTTCCTTAC-TTTTTTTTTTTTTTGACAAAGATCAGGACAG  99

seq1  TTTTTCGAAGGAGTTTCTCTTTATTGCCTCATCCTTCAAGCAGTAAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCGAAGGAGTTTCTCTTTATTGCCTCATCCTTCAAGCAGTAAATAA  149

seq1  TATTGTGCCTTGACCTAACATCATTTTAATTCACCATTTTCTTTGATTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGCCTTGACCTAACATCATTTTAATTCACCATTTTCTTTGATTGA  199

seq1  GGCATCCACCTCCTCTACTTTTTCTTTAAGTCTGATAATCTGTCTCCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCCACCTCCTCTACTTTTTCTTTAAGTCTGATAATCTGTCTCCCAC  249

seq1  AGGTTCTCTATGTATCAATTTTATTTGCCTCAGTGCATTTTCTCTTCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTCTATGTATCAATTTTATTTGCCTCAGTGCATTTTCTCTTCAGG  299

seq1  ATTTTTCTTTTTTTAGCATTTCTAACCACCTATTGAACTCAATTTTAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTTTTTTTAGCATTTCTAACCACCTATTGAACTCAATTTTAATA  349

seq1  TTTTATATTGTCCTTATTTCCTTCAGGCATCTGGTATTATTTTCTTACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATTGTCCTTATTTCCTTCAGGCATCTGGTATTATTTTCTTACCC  399

seq1  AAGATTCATTTTGTTCCTGTCTGAGTGGATTCACATGGTTTACAAACTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCATTTTGTTCCTGTCTGAGTGGATTCACATGGTTTACAAACTTT  449

seq1  AATGCCCTTGATCATGACTGTGGGTTTTCAATTCTTTGTCTTGGGTATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCCTTGATCATGACTGTGGGTTTTCAATTCTTTGTCTTGGGTATCA  499

seq1  CATAAATTGTGCTCCTTATTGGATACCTCTATGGTTTGTGGTTTGAGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATTGTGCTCCTTATTGGATACCTCTATGGTTTGTGGTTTGAGCCA  549

seq1  AGGACATTTTATCTACGTTTTTGTTTGTTTTGGGTATCTGTTCTGAGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATTTTATCTACGTTTTTGTTTGTTTTGGGTATCTGTTCTGAGCAT  599

seq1  CAGAGTTCAAAGGGACTGCTTAATTTTTTGCATTTATAGCCCAGAAGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTCAAAGGGACTGCTTAATTTTTTGCATTTATAGCCCAGAAGGCT  649

seq1  ACACGCACAATATGAGAAGTTAGACAGGATCCATTGTATCTGAAGGGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGCACAATATGAGAAGTTAGACAGGATCCATTGTATCTGAAGGGTTC  699

seq1  AGAACCCAGGTGCAGTGTCCTACTACATCCAGCTCTGGTCTAGTCTGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCAGGTGCAGTGTCCTACTACATCCAGCTCTGGTCTAGTCTGGCA  749

seq1  GCAACTTTGTGAAGAAGCTGTGCAGAGTAGGTCCTGGGGAGTTGTGTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTTTGTGAAGAAGCTGTGCAGAGTAGGTCCTGGGGAGTTGTGTGGA  799

seq1  AGGCAACAGAGTTGGAGGAGTGGTTCCTGATGGGGAGTGTGGGATTCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAACAGAGTTGGAGGAGTGGTTCCTGATGGGGAGTGTGGGATTCCTG  849

seq1  CACGATTAGATGAGTTTAAGAAAAAGAAAAATTAAAAGCAAAGGAACAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGATTAGATGAGTTTAAGAAAAAGAAAAATTAAAAGCAAAGGAACAAG  899

seq1  CAAGCAAGCAAGGAAGCAAGCAAGCAAAAATCCAAAAAAACAAAAATTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAAGCAAGGAAGCAAGCAAGCAAAAATCCAAAAAAACAAAAATTGC  949

seq1  TGTGAAGAAGTGGGAAGCTAATTAATTAAAAGGTACATAAGTAGGTGGGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGAAGTGGGAAGCTAATTAATTAAAAGGTACATAAGTAGGTGGGC  999

seq1  TTAGAAGAATTC  1012
      ||||||||||||
seq2  TTAGAAGAATTC  1011

seq1: chr4_146676232_146676989
seq2: B6Ng01-093J21.g_66_826

seq1  GAATTCTGGAGATGTCTCACACCTGATCGCTTGTAAGAAAAAATGCTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGAGATGTCTCACACCTGATCGCTTGTAAGAAAAAATGCTAAC  50

seq1  ATCCAATTCCTGGGACAAGAATTGGAGGGTAGAATTTCTTGATGGAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATTCCTGGGACAAGAATTGGAGGGTAGAATTTCTTGATGGAAAAA  100

seq1  GTGATGTAGGGAATAGAAAGCAGGTGGAAGTGATTTATGAGAGACAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGTAGGGAATAGAAAGCAGGTGGAAGTGATTTATGAGAGACAGAGA  150

seq1  AGAGAACAGATAAATGGGAACAGGGGCAGAGAGGTAAAGAGCAAGATACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACAGATAAATGGGAACAGGGGCAGAGAGGTAAAGAGCAAGATACG  200

seq1  CATAAAGTCATAGGCTTGAATAGTCTGAAATTTGAATGATCATTGGTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAGTCATAGGCTTGAATAGTCTGAAATTTGAATGATCATTGGTAAA  250

seq1  CTGCTCCAATGAAAGGCCTATGCTTTAAATTATATAGAAACCTCCTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCAATGAAAGGCCTATGCTTTAAATTATATAGAAACCTCCTTCTC  300

seq1  ATAATTTATAACACTGGTGTATCCACCAGTACTCACACTACACTCATGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTATAACACTGGTGTATCCACCAGTACTCACACTACACTCATGTA  350

seq1  CATATGCAATGTGC--ATATATATATATATATATATATATATATATATAT  398
      ||||||||||||||  ||||||||||||||||||||||||||||||||||
seq2  CATATGCAATGTGCATATATATATATATATATATATATATATATATATAT  400

seq1  ATATATATACACATATGTATATATACACACATATATATACATATGTATAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATACACATATGTATATATACACACATATATATACATATGTATAT  450

seq1  ATATACATATGTATATATGTGTGTGTATATATGTATATATATAAATGCAT  498
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATATACATATGTATATATGTGTGTGTATATATGTATATATATAAATACAT  500

seq1  ATATATACATATATATATATATAAAACTTTTCACAAGGGTGCTTTGGGTA  548
      ||||||||||||||||||||||||| ||||  | | ||||| |  |||||
seq2  ATATATACATATATATATATATAAATCTTTATATATGGGTGTTGAGGGTA  550

seq1  TTTAAGTCAAATTAGATATTGATTGGTTATTCACAATAAAT-TCATGACA  597
      ||||||| | ||  |||| ||||||||||| ||| ||| || |||| |||
seq2  TTTAAGTGAGATGTGATAGTGATTGGTTATACAC-ATATATATCATAACA  599

seq1  TCATTG-ACTTAGCATA-TTTTGGAGG-AAGGACAAATTTTAGATCAATG  644
      |||||| |||| ||||| ||||||||| |||||| |||||||||||||||
seq2  TCATTGTACTT-GCATATTTTTGGAGGAAAGGAC-AATTTTAGATCAATG  647

seq1  TCTTTTTGGTTGGTTCTATATATACATTTCAC-TTTTTGTAGATAGCAAA  693
      ||||||||| ||| |||||||||||| ||||| ||||||||||||| |||
seq2  TCTTTTTGGGTGGATCTATATATACA-TTCACTTTTTTGTAGATAG-AAA  695

seq1  GCCC-TTCCCATAACCAGTACTCTGGAACATAAAAGCCAATGTGCTTGGA  742
      |||| |||||| ||||| ||||||||||||||||| ||||||||||||||
seq2  GCCCTTTCCCAAAACCA-TACTCTGGAACATAAAA-CCAATGTGCTTGGA  743

seq1  -GGCACATTCT-TGACCT  758
       |||||||||| ||||||
seq2  GGGCACATTCTATGACCT  761