BAC Information

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BAC

Clone NameB6Ng01-094F21
Chromosome4 (Build37)
Map Location 145,208,174 - 145,334,436
singlet/doubletdoublet
Overlap geneOTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704
Upstream geneLOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701
Downstream gene1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094F21.bB6Ng01-094F21.g
ACCDH905611DH905612
length1,0541,088
definitionDH905611|Mus musculus domesticus DNA, BAC clone: B6Ng01-094F21, 5' end.DH905612|Mus musculus domesticus DNA, BAC clone: B6Ng01-094F21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,333,443 - 145,334,436)(145,208,174 - 145,209,285)
sequence
gaattctcagttccttcttcagcaccatgtttgcctgcaggctgccatgc
ttcctgccatggtgataatggactaaacctccgaaactgtatttaaatta
aatgtttttttttaatttataagatcgaattaaatgttttccttgataag
tcttggtcaaggtgtctctttatagcaataaaaccttaactaagacaaat
gtcaaaaagtgtagagggtctttaagatcatgcagtagtcaaaattaggg
acatgatactcagggatcagttagttttggatcctgttctttttgtattg
ggttgttttttgtttgtttgtttaccagttgtattatctgttgagatgag
ttgggatctcgctgaccatatcactttagaagcactgaagccatttctcc
atgttgactatcccctttggagaatgaatgttgaatagagtcaaacatca
gggtttccacagcttctctgaccaaggagacagagctgcaggaccttagg
agagattcctcatgatttcctgggacctggttgaccttggaaggcaaaga
tcagaatacagtgacttccatttagttcttctgtccacattggtacagac
ctcccacttagttacttttggttgctgtaataaaagaccatgacaaagac
aacatacagaaaaagagtttattttgttttatggtccagaagggtaatgt
gatggttcaaatgagaatggcccacataggctcatctatttgaatgtttg
gtctccagtttgcagaactatttgggaggactaggaggtatggtcactgg
aggtgtgtcactagggttagcctttcaagtgttaaaagcccacactatca
tagttagcccccccttctctctgcttcatgctgatgaataaggatataaa
ctctcagctactgcttcagtgccatgtttgcctgctgctgctgttttctg
caccatgatggtaatggactcacccttctgaaactgtagctccccaataa
actctcttatagttggcctggtcatgggggtggtttcccagcaatagaaa
agta
gaattcagacataatagtgagctgcaatatatttagagagaattagatta
gtttttaaagtagaaacagcaagtacctttaccctttaatcatttgttca
tggagcaggtttacattttttgaggcatatttgcaataaagacagtatat
agtctgtatattataatttttgataaacaaaggaagaatgatagatcaca
cttctctatgaaaagtgcaattgtgatatacatatggtcaaattctgaag
aaaaaagttaaaattagaatactgaaattttcagttaggttaatacaatg
aggaataatttattagattttaatgaatatttagtataattctccctcaa
tttaaaaacacagtttgatcaaaaattattatacttcattggaatgcatt
gccacatatgatatttgcttaaacatacatagctaatcattttatagtga
aagaccatatggtattagagaaattgttattaagcatatttatttatgtc
tccacaggagctaattaagagtcaaagatgtggctctgcagttaagctct
cttcttcttgcagtattcagattcagttttctgtacctgcctggggactt
cttttccttccagaactcttttttttcgagattatcttttaccattgcct
gcgtttctcatgtgcacagagctacatgccagcaaaaataacattccata
tgaaattaaagtcaataaacattatttaaaaattataaatgatctggaaa
tattacacaggacacaagaaaccatctaggaaagagaatgagaggaaatg
tgaagcctgaatgagtttcagacagctgacccctcatatcaacattttaa
caattaggaatgattcctatgtatgataaaaatgtgttgtatcgtggaac
cagagctggagactcttatgtgttcattgtatgtagaaagatttatccat
cattgctgtttttgtgtcattttatgagagcaccgtatgtgaagaattat
tatacagaataattgtatcagcatccatcatcaagaaatctgctccgaag
agtgatttatacgaatccacattttttaatcataatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145333443_145334436
seq2: B6Ng01-094F21.b_109_1103 (reverse)

seq1  TACTTTTCTATTGCTGTGAAAACA-CACCATGACCAAGGCAACTAATAAG  49
      |||||||||||||||| |||| || | ||||||||| | ||||| |||||
seq2  TACTTTTCTATTGCTGGGAAACCACCCCCATGACCAGGCCAACT-ATAAG  49

seq1  AGAGTTTATT-GGGAGCTTACAGTTTCAG-AGGGTGAGTCCATTACCATC  97
      |||||||||| |||||| ||||||||||| ||||||||||||||||||||
seq2  AGAGTTTATTGGGGAGC-TACAGTTTCAGAAGGGTGAGTCCATTACCATC  98

seq1  ATGGTGCAGAAAACAGCAGCAGCAGGCAAACATGGCACTGGAGCAGTAGC  147
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATGGTGCAGAAAACAGCAGCAGCAGGCAAACATGGCACTGAAGCAGTAGC  148

seq1  TGAGAGTTTATATCCTTATTCATCAGCATGAAGCAGAGAGAAGGGGGGGC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTTTATATCCTTATTCATCAGCATGAAGCAGAGAGAAGGGGGGGC  198

seq1  TAACTATGATAGTGTGGGCTTTTAACACTTGAAAGGCTAACCCTAGTGAC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTATGATAGTGTGGGCTTTTAACACTTGAAAGGCTAACCCTAGTGAC  248

seq1  ACACCTCCAGTGACCATACCTCCTAGTCCTCCCAAATAGTTCTGCAAACT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTCCAGTGACCATACCTCCTAGTCCTCCCAAATAGTTCTGCAAACT  298

seq1  GGAGACCAAACATTCAAATAGATGAGCCTATGTGGGCCATTCTCATTTGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACCAAACATTCAAATAGATGAGCCTATGTGGGCCATTCTCATTTGA  348

seq1  ACCATCACATTACCCTTCTGGACCATAAAACAAAATAAACTCTTTTTCTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCACATTACCCTTCTGGACCATAAAACAAAATAAACTCTTTTTCTG  398

seq1  TATGTTGTCTTTGTCATGGTCTTTTATTACAGCAACCAAAAGTAACTAAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTGTCTTTGTCATGGTCTTTTATTACAGCAACCAAAAGTAACTAAG  448

seq1  TGGGAGGTCTGTACCAATGTGGACAGAAGAACTAAATGGAAGTCACTGTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGTCTGTACCAATGTGGACAGAAGAACTAAATGGAAGTCACTGTA  498

seq1  TTCTGATCTTTGCCTTCCAAGGTCAACCAGGTCCCAGGAAATCATGAGGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATCTTTGCCTTCCAAGGTCAACCAGGTCCCAGGAAATCATGAGGA  548

seq1  ATCTCTCCTAAGGTCCTGCAGCTCTGTCTCCTTGGTCAGAGAAGCTGTGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCCTAAGGTCCTGCAGCTCTGTCTCCTTGGTCAGAGAAGCTGTGG  598

seq1  AAACCCTGATGTTTGACTCTATTCAACATTCATTCTCCAAAGGGGATAGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTGATGTTTGACTCTATTCAACATTCATTCTCCAAAGGGGATAGT  648

seq1  CAACATGGAGAAATGGCTTCAGTGCTTCTAAAGTGATATGGTCAGCGAGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGGAGAAATGGCTTCAGTGCTTCTAAAGTGATATGGTCAGCGAGA  698

seq1  TCCCAACTCATCTCAACAGATAATACAACTGGTAAACAAACAAACAAAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAACTCATCTCAACAGATAATACAACTGGTAAACAAACAAACAAAAA  748

seq1  ACAACCCAATACAAAAAGAACAGGATCCAAAACTAACTGATCCCTGAGTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCCAATACAAAAAGAACAGGATCCAAAACTAACTGATCCCTGAGTA  798

seq1  TCATGTCCCTAATTTTGACTACTGCATGATCTTAAAGACCCTCTACACTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTCCCTAATTTTGACTACTGCATGATCTTAAAGACCCTCTACACTT  848

seq1  TTTGACATTTGTCTTAGTTAAGGTTTTATTGCTATAAAGAGACACCTTGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACATTTGTCTTAGTTAAGGTTTTATTGCTATAAAGAGACACCTTGA  898

seq1  CCAAGACTTATCAAGGAAAACATTTAATTCGATCTTATAAATTAAAAAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACTTATCAAGGAAAACATTTAATTCGATCTTATAAATTAAAAAAA  948

seq1  AACATTTAATTTAAATACAGTTTCGGAGGTTTAGTCCATTATCACCA  994
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTAATTTAAATACAGTTTCGGAGGTTTAGTCCATTATCACCA  995

seq1: chr4_145208174_145209285
seq2: B6Ng01-094F21.g_66_1153

seq1  GAATTCAGACATAATAGTGAGCTGCAATATATTTAGAGAGAATTAGATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACATAATAGTGAGCTGCAATATATTTAGAGAGAATTAGATTA  50

seq1  GTTTTTAAAGTAGAAACAGCAAGTACCTTTACCCTTTAATCATTTGTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAAAGTAGAAACAGCAAGTACCTTTACCCTTTAATCATTTGTTCA  100

seq1  TGGAGCAGGTTTACATTTTTTGAGGCATATTTGCAATAAAGACAGTATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCAGGTTTACATTTTTTGAGGCATATTTGCAATAAAGACAGTATAT  150

seq1  AGTCTGTATATTATAATTTTTGATAAACAAAGGAAGAATGATAGATCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTATATTATAATTTTTGATAAACAAAGGAAGAATGATAGATCACA  200

seq1  CTTCTCTATGAAAAGTGCAATTGTGATATACATATGGTCAAATTCTGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTATGAAAAGTGCAATTGTGATATACATATGGTCAAATTCTGAAG  250

seq1  AAAAAAGTTAAAATTAGAATACTGAAATTTTCAGTTAGGTTAATACAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGTTAAAATTAGAATACTGAAATTTTCAGTTAGGTTAATACAATG  300

seq1  AGGAATAATTTATTAGATTTTAATGAATATTTAGTATAATTCTCCCTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATAATTTATTAGATTTTAATGAATATTTAGTATAATTCTCCCTCAA  350

seq1  TTTAAAAACACAGTTTGATCAAAAATTATTATACTTCATTGGAATGCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAACACAGTTTGATCAAAAATTATTATACTTCATTGGAATGCATT  400

seq1  GCCACATATGATATTTGCTTAAACATACATAGCTAATCATTTTATAGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACATATGATATTTGCTTAAACATACATAGCTAATCATTTTATAGTGA  450

seq1  AAGACCATATGGTATTAGAGAAATTGTTATTAAGCATATTTATTTATGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCATATGGTATTAGAGAAATTGTTATTAAGCATATTTATTTATGTC  500

seq1  TCCACAGGAGCTAATTAAGAGTCAAAGATGTGGCTCTGCAGTTAAGCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGGAGCTAATTAAGAGTCAAAGATGTGGCTCTGCAGTTAAGCTCT  550

seq1  CTTCTTCTTGCAGTATTCAGATTCAGTTTTCTGTACCTGCCTGGGGACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTTGCAGTATTCAGATTCAGTTTTCTGTACCTGCCTGGGGACTT  600

seq1  CTTTTCCTTCCAGAACTCTTTTTTTTCGAGATTATCTTTTACCATTGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCTTCCAGAACTCTTTTTTTTCGAGATTATCTTTTACCATTGCCT  650

seq1  GCGTTTCTCATGTGCACAGAGCTACATGCCAGCAAAAATAACATTCCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTTCTCATGTGCACAGAGCTACATGCCAGCAAAAATAACATTCCATA  700

seq1  TGAAATTAAAGTCAATAAACATTATTTAAAAATTATAAATGATCTGGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTAAAGTCAATAAACATTATTTAAAAATTATAAATGATCTGGAAA  750

seq1  TATTACACAGGACACAAGAAACCATCTAGGAAAGAGAATGAGAGGAAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACACAGGACACAAGAAACCATCTAGGAAAGAGAATGAGAGGAAATG  800

seq1  TGAAGCCTGAATGAGTTTCAGGACAGCTGACCCCTCATATCAACATTTTA  850
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGAAGCCTGAATGAGTTTCA-GACAGCTGACCCCTCATATCAACATTTTA  849

seq1  ACAATTAGGAATGATTCCTATGTATGATAAAAATGTGTTGTATTCGTGGA  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACAATTAGGAATGATTCCTATGTATGATAAAAATGTGTTGTA-TCGTGGA  898

seq1  ACCCAGAGCTGGAGACTCTTATGTGTTCATTGTAATGTAGGAAAAGATTT  950
      | ||||||||||||||||||||||||||||||| ||||||  ||||||||
seq2  A-CCAGAGCTGGAGACTCTTATGTGTTCATTGT-ATGTAG--AAAGATTT  944

seq1  ATCCCATCAATGCTGTTTTTGTGTCAATTTTTATGAGGAGGCACCGTAAT  1000
      || |||||| ||||||||||||||||  |||||||||   ||||||||  
seq2  AT-CCATCATTGCTGTTTTTGTGTCA--TTTTATGAG--AGCACCGTA--  987

seq1  TGTGAAGGAATTTATTATACAGGAATACATTGTTATCCAGCATCCCATCA  1050
      |||||||  | |||||||||| ||||| |||| ||| |||||| ||||| 
seq2  TGTGAAG--AATTATTATACA-GAATA-ATTG-TAT-CAGCAT-CCATC-  1029

seq1  ACCAAGAAATCTGCTCCAGAAGGAAAGTGAATTTTATCAGATTCCACCAT  1100
      | ||||||||||||||| ||||   |||||  |||||  || |||| |||
seq2  ATCAAGAAATCTGCTCC-GAAG---AGTGA--TTTATACGAATCCA-CAT  1072

seq1  TTTTT----TTAATAT  1112
      |||||     ||||||
seq2  TTTTTAATCATAATAT  1088