BAC Information

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BAC

Clone NameB6Ng01-094O09
Chromosome4 (Build37)
Map Location 27,186,487 - 27,276,279
singlet/doubletdoublet
Overlap genenone
Upstream geneManea, Bhmt-ps1, LOC665079, Gng2-ps1
Downstream geneLOC100040691, Tpm3-rs2, LOC100040842, LOC100040735
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094O09.bB6Ng01-094O09.g
ACCDH905989DH905990
length1,188976
definitionDH905989|Mus musculus domesticus DNA, BAC clone: B6Ng01-094O09, 5' end.DH905990|Mus musculus domesticus DNA, BAC clone: B6Ng01-094O09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,186,487 - 27,187,673)(27,275,320 - 27,276,279)
sequence
gaattccacttaatgtgtccatttgtagtaacatttgttttggaaaacat
tctattttgcattaaattgttccattaaaaagtaaatattatgcaggtga
aaagcaatgatattaaataaggcaatattaaagagacacagaagacaaaa
gacaagtcattattgctgtgctgcatcctttgcatggaggaggtggctga
gagcttcattgaagagcctaggactcttctccaagaatctttccttaaac
attgttacactgttttaaaatcctgatttttttttctaacctaagagaga
ttagatgtttatagtatgtcgtttattcagacatcctgcccaaatagcaa
ctatctgtggttgattgaagattcccattttaatttaatctatgaatttt
tgtgtgacacacaaaatcataaactacatggcatattttaattatgcatg
ttttaaataaatggtcacttttaacgaagtatcttacataaatatgtaat
tcctgtgatttggacactcagagtctctaatctatcataatttgaaaact
gttgaaatattcatccaatatccttcttctagtcaatatagaaatgttat
taaaatatacaaagtaaatatatttaacttctcaaagaactatcttagat
tatttttttagattaacactgtaattttctatatatgagttggggcaatt
atatttcttgtatttgtctattttgtttaatttgatctcaaattaaacac
aaaatgagcaccaggaaggatcacattcctgtcaaaaactcttatcagac
aattaaaattatagaaaattttctctttgaatatactaaatttcaataga
gataagtaacaggaatccattttgggaaatcctcaaatatctaagaatca
aacagaaaattaaacaggcttcttctaaatgactcagttgaaatataaag
taaaaaaattgattttgtttcatctttaaaatgatcttagaaaaggtctt
aaatgactaccacacctatgtcactaaacatattcatatacaatgtgctg
gttccatttatcatggtcctaaacccgtcttgtctagactactcaatttg
tgggttggtcaacctgtggtgagaagagcttttatttggtggaaatgcat
tcttcacctttgcaagctatgtgtaacctaaactgtgg
gaattctctttgttttctttgttgtatgtatttccagtttgatcttgaat
agttttatgtcttttcttcaactgtttattcgtttttacccttcgtttta
ttttatggatttattaatttcatccatttttttttcatttttagctctgt
tggaatgttcaaaagttcctgtagtaggttctaactgggttctagctgtt
gttgactgtgttcttacactagagaataggctcctaggttctcattaaag
gtgtcagtgcctatttctgagtttgtgttttttggatgggtgatttgttt
cttggtttctgtttcctctcttatctctgaccagacttgcctgtggctga
ccagatattctccatcagatttggggactgaaattctgattatcagcttg
gactctagatgaatagtgtgcctctgtctgagtttcattcttggacaagg
caaagacaaggcaagggacagttggggtaaagtgaggaagagtctgcatg
taagtggcctttcttgaatttaggttgtctgttgtggcctctggtgaaac
aaagggccttcttctaaactgggtgatgagatacaatgacaaaaatggag
ggacatttgtaggcatgtgagcagacagtgaaagagtatagaggtagtcc
atgggcagatgggtgttttaaatggagtttttgtagtctttgtggtctct
ggtggagcacaggatttctccagaaattgcaggctgggatagggtgatga
agaaggatacaggggtagaaagtaggccaggtggggcatgagagagttgg
ggtggtctacaggccagagcctacctggactcctggcagctggagtgtct
tctggctaggcaggatgtttcacctgggattgtagcttatttttatcttt
agatacaggcttccttcctaaggaaagagatggtgcatctggatgggagg
ctagtagaaaaatttatgaagaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_27186487_27187673
seq2: B6Ng01-094O09.b_47_1234

seq1  GAATTCCACTTAATGTGTCCATTTGTAGTAACATTTGTTTTGGAAAACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTAATGTGTCCATTTGTAGTAACATTTGTTTTGGAAAACAT  50

seq1  TCTATTTTGCATTAAATTGTTCCATTAAAAAGTAAATATTATGCAGGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTGCATTAAATTGTTCCATTAAAAAGTAAATATTATGCAGGTGA  100

seq1  AAAGCAATGATATTAAATAAGGCAATATTAAAGAGACACAGAAGACAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAATGATATTAAATAAGGCAATATTAAAGAGACACAGAAGACAAAA  150

seq1  GACAAGTCATTATTGCTGTGCTGCATCCTTTGCATGGAGGAGGTGGCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGTCATTATTGCTGTGCTGCATCCTTTGCATGGAGGAGGTGGCTGA  200

seq1  GAGCTTCATTGAAGAGCCTAGGACTCTTCTCCAAGAATCTTTCCTTAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTCATTGAAGAGCCTAGGACTCTTCTCCAAGAATCTTTCCTTAAAC  250

seq1  ATTGTTACACTGTTTTAAAATCCTGATTTTTTTTTCTAACCTAAGAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTACACTGTTTTAAAATCCTGATTTTTTTTTCTAACCTAAGAGAGA  300

seq1  TTAGATGTTTATAGTATGTCGTTTATTCAGACATCCTGCCCAAATAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGTTTATAGTATGTCGTTTATTCAGACATCCTGCCCAAATAGCAA  350

seq1  CTATCTGTGGTTGATTGAAGATTCCCATTTTAATTTAATCTATGAATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGTGGTTGATTGAAGATTCCCATTTTAATTTAATCTATGAATTTT  400

seq1  TGTGTGACACACAAAATCATAAACTACATGGCATATTTTAATTATGCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGACACACAAAATCATAAACTACATGGCATATTTTAATTATGCATG  450

seq1  TTTTAAATAAATGGTCACTTTTAACGAAGTATCTTACATAAATATGTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATAAATGGTCACTTTTAACGAAGTATCTTACATAAATATGTAAT  500

seq1  TCCTGTGATTTGGACACTCAGAGTCTCTAATCTATCATAATTTGAAAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGATTTGGACACTCAGAGTCTCTAATCTATCATAATTTGAAAACT  550

seq1  GTTGAAATATTCATCCAATATCCTTCTTCTAGTCAATATAGAAATGTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAATATTCATCCAATATCCTTCTTCTAGTCAATATAGAAATGTTAT  600

seq1  TAAAATATACAAAGTAAATATATTTAACTTCTCAAAGAACTATCTTAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATACAAAGTAAATATATTTAACTTCTCAAAGAACTATCTTAGAT  650

seq1  TATTTTTTTAGATTAACACTGTAATTTTCTATATATGAGTTGGGGCAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTTAGATTAACACTGTAATTTTCTATATATGAGTTGGGGCAATT  700

seq1  ATATTTCTTGTATTTGTCTATTTTGTTTAATTTGATCTCAAATTAAACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCTTGTATTTGTCTATTTTGTTTAATTTGATCTCAAATTAAACAC  750

seq1  AAAATGAGCACCAGGAAGGATCACATTCCTGTCAAAAACTCTTATCAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAGCACCAGGAAGGATCACATTCCTGTCAAAAACTCTTATCAGAC  800

seq1  AATTAAAATTATAGAAAATTTTCTCTTTGAATATACTAAATTTCAATAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAATTATAGAAAATTTTCTCTTTGAATATACTAAATTTCAATAGA  850

seq1  GATAAGTAACAGGAATCCA-TTTGGGAAATCCTCAAATATCTAAGAATCA  899
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GATAAGTAACAGGAATCCATTTTGGGAAATCCTCAAATATCTAAGAATCA  900

seq1  AACAGAAAATTAAACAGGCTTCTTCTAAATGACTCAGTTGAAATATAAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAAATTAAACAGGCTTCTTCTAAATGACTCAGTTGAAATATAAAG  950

seq1  TAAAAAAAATTGATTTTGTTTCATCTTTAAAAATGATCTTAGAAAAGGTC  999
      | |||||||||||||||||||||||||| |||||||||||||||||||||
seq2  T-AAAAAAATTGATTTTGTTTCATCTTT-AAAATGATCTTAGAAAAGGTC  998

seq1  TTAAATGACTACCACACCTATGTCACTAAACATATTCATATACAATGTGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGACTACCACACCTATGTCACTAAACATATTCATATACAATGTGC  1048

seq1  TGGTTCCATTTATCATTGTTCATAAACACGTC-TGTCTAGGACTACTC-A  1097
      ||||||||||||||| || || ||||| |||| |||||| |||||||| |
seq2  TGGTTCCATTTATCA-TGGTCCTAAACCCGTCTTGTCTA-GACTACTCAA  1096

seq1  TTTGT-GGTTGGTCAACCTGT-GTGAG-AGAGCTTATCATTGTGGGAAAT  1144
      ||||| ||||||||||||||| ||||| ||||||| |  |||  ||||||
seq2  TTTGTGGGTTGGTCAACCTGTGGTGAGAAGAGCTTTTATTTGGTGGAAAT  1146

seq1  GCATTCT--ACCTCTGCCAGTCTATGTGTAACACTTTAACTGTGG  1187
      |||||||  |||| ||| || |||||||||  || | ||||||||
seq2  GCATTCTTCACCTTTGCAAG-CTATGTGTA--ACCTAAACTGTGG  1188

seq1: chr4_27275320_27276279
seq2: B6Ng01-094O09.g_69_1026 (reverse)

seq1  TCTACTAGCCTCCCATCCAGATGCACACTCTCTTTCCTTAGGAAGGAAGC  50
      ||||||||||||||||||||||||||  ||||||||||||||||||||||
seq2  TCTACTAGCCTCCCATCCAGATGCACCATCTCTTTCCTTAGGAAGGAAGC  50

seq1  CTGTATCTAAAGAATAAAAATAAGCTACAATCCCAGTGAAAACATCCTGC  100
      |||||||||||| |||||||||||||||||||||||   |||||||||||
seq2  CTGTATCTAAAG-ATAAAAATAAGCTACAATCCCAGGTGAAACATCCTGC  99

seq1  CTAGCCAGAAGACACTCCAGCTGCCAGGAGTCCAGGTAGGCCTCTGGCCT  150
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTAGCCAGAAGACACTCCAGCTGCCAGGAGTCCAGGTAGG-CTCTGGCCT  148

seq1  GTAGACCACCCCAACTCTCTCATGCCCCACCTGGCCTACCTTCTACCCCT  200
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTAGACCACCCCAACTCTCTCATGCCCCACCTGGCCTACTTTCTACCCCT  198

seq1  GTATCCTTCTTCATCACCCTATCCCAGCCTGCAATTTCTGGAGAAATCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCTTCTTCATCACCCTATCCCAGCCTGCAATTTCTGGAGAAATCCT  248

seq1  GTGCTCCACCAGAGACCACAAAGACTACAAAAACTCCATTTAAAACACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCCACCAGAGACCACAAAGACTACAAAAACTCCATTTAAAACACCC  298

seq1  ATCTGCCCATGGACTACCTCTATACTCTTTCACTGTCTGCTCACATGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCCCATGGACTACCTCTATACTCTTTCACTGTCTGCTCACATGCCT  348

seq1  ACAAATGTCCCTCCATTTTTGTCATTGTATCTCATCACCCAGTTTAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGTCCCTCCATTTTTGTCATTGTATCTCATCACCCAGTTTAGAAG  398

seq1  AAGGCCCTTTGTTTCACCAGAGGCCACAACAGACAACCTAAATTCAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCCTTTGTTTCACCAGAGGCCACAACAGACAACCTAAATTCAAGAA  448

seq1  AGGCCACTTACATGCAGACTCTTCCTCACTTTACCCCAACTGTCCCTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCACTTACATGCAGACTCTTCCTCACTTTACCCCAACTGTCCCTTGC  498

seq1  CTTGTCTTTGCCTTGTCCAAGAATGAAACTCAGACAGAGGCACACTATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTTTGCCTTGTCCAAGAATGAAACTCAGACAGAGGCACACTATTC  548

seq1  ATCTAGAGTCCAAGCTGATAATCAGAATTTCAGTCCCCAAATCTGATGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGAGTCCAAGCTGATAATCAGAATTTCAGTCCCCAAATCTGATGGA  598

seq1  GAATATCTGGTCAGCCACAGGCAAGTCTGGTCAGAGATAAGAGAGGAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATCTGGTCAGCCACAGGCAAGTCTGGTCAGAGATAAGAGAGGAAAC  648

seq1  AGAAACCAAGAAACAAATCACCCATCCAAAAAACACAAACTCAGAAATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCAAGAAACAAATCACCCATCCAAAAAACACAAACTCAGAAATAG  698

seq1  GCACTGACACCTTTAATGAGAACCTAGGAGCCTATTCTCTAGTGTAAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGACACCTTTAATGAGAACCTAGGAGCCTATTCTCTAGTGTAAGAA  748

seq1  CACAGTCAACAACAGCTAGAACCCAGTTAGAACCTACTACAGGAACTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTCAACAACAGCTAGAACCCAGTTAGAACCTACTACAGGAACTTTT  798

seq1  GAACATTCCAACAGAGCTAAAAATGAAAAAAAAATGGATGAAATTAATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTCCAACAGAGCTAAAAATGAAAAAAAAATGGATGAAATTAATAA  848

seq1  ATCCATAAAATAAAACGAAGGGTAAAAACGAATAAACAGTTGAAGAAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATAAAATAAAACGAAGGGTAAAAACGAATAAACAGTTGAAGAAAAG  898

seq1  ACATAAAACTATTCAAGATCAAACTGGAAATACATACAACAAAGAAAACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAACTATTCAAGATCAAACTGGAAATACATACAACAAAGAAAACA  948

seq1  AAGAGAATTC  960
      ||||||||||
seq2  AAGAGAATTC  958