BAC Information

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BAC

Clone NameB6Ng01-094O13
Chromosome4 (Build37)
Map Location 33,912,215 - 34,020,522
singlet/doubletdoublet
Overlap geneLOC100041919, LOC100041924, Cnr1
Upstream geneAnkrd6, LOC665298, Rragd, 4933421O10Rik, Ube2j1, LOC100039142, Gabrr2, Gabrr1, Acy1l2, Srrp, Pnrc1, Rngtt
Downstream geneSpaca1, LOC100039220, LOC665361, LOC665367, 2700059D21Rik, Orc3l, Rars2, Slc35a1, 1700003M02Rik, Gm136, 1810030N24Rik, Zfp292, Cga, Mobkl2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094O13.bB6Ng01-094O13.g
ACCDH905997DH905998
length1,0651,133
definitionDH905997|Mus musculus domesticus DNA, BAC clone: B6Ng01-094O13, 5' end.DH905998|Mus musculus domesticus DNA, BAC clone: B6Ng01-094O13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,019,442 - 34,020,522)(33,912,215 - 33,913,378)
sequence
gaattcctcccagaagaaactgtgggcaatgctgagccatctcttgcagc
agtctttccctacaagactcaagacctggctggctcaggacctggtacac
agcaagctagtgaatggatgcatgtattggcaacagtgcaaatctaactt
aacagagtggctttcaggggtaaatagttgccctcattttaaatccaatt
ggccactagaagatttaacatagtcttggtctcatacaaatgtcccccct
gaaaagatgtaacatgtcaacataaaatgtaccactaatgatctatcaag
tgactcttctcacagaatcagatttaagttgtatactacagtacgtggaa
atcataggcaaagattggatgcctacttttttctctgattcttgtttcct
ctgaattaagatgaactctaacaattaacctgtgaaagacatccctataa
tatatccagccttgaatggatcctaatactgcttctgatatacctttaag
acatatagaagtgttcttacattagacttcttttcctttcccaagtgaat
gctaagcgctgatctttcccaaatggcctgtcaagagaagttatgtgaaa
acccagccactagatagagtggcttttatcagcccatgggaatcaatttg
ttattctattcactggacacagctcttgctttggttgagcaacttctcct
gctacaatctttcataaatttacaccagaactaattaaactataagaaag
aaaatatgtgatagaggttaaaattggttattactactgcctacaaaaat
taaatttctaattacttttctaaggtagaggcattgaggaaattcaatat
attaataaaaattaatcgtgaatatttggaattttgcctcaagaagtaat
taggattagtaaagaaaattctactgaaacaatatgtttgtgccagagat
aaacgtaaatgggagctcagagctcagcttcattctaacaacaaactcat
tctcttttatgaaatatttactactgcaaacatgaattatcaacacagac
catactactctgagg
gaattcagaaaatttccttttaaaatatttcactgaaacattaaaaataa
ttaggacctgaagcactgattcaaaacacattgtgttccaaatgcctttt
gatgaaataatttttttttttgagacatggcttctatagcccaagttggt
ctccatctctcgatgggtgatctttctgcctaagtctctcaaatgctgga
attgcaagcatgagccaccatgcccagttctttttaataccatggctctt
ctttctttactcaggcttgaaagactattcccatctactgtgcaattata
tatggctatagctttgctcattttcacagggtttcaacatttctctttaa
gcaccagatcccttgatctgtgcctcatttttaactcctttgttagatgg
gtccccaagattgtggctatgttcatggacatctttattttggttgagag
caacaacagggaaagactccaaacacccaagggaccagcaaagacaacat
gcttggacttcagggagggagtcagagggttagtctctgtttgaagtgca
cacacttgcacagggggaggtggtaagtttgcaatacctcatcagaagtc
tgacataagcacacctcagtttaattctctagatctggtttttggttttt
tctttttcattgcttgagaaagaatatgagtctttacattcctatgattt
tcctgcttgtccctgaccatgcacttggacacattatcatttgctttgtc
tctcatctcttttttattcttcccccttcccatctccagctaatctcgat
cttagcatgtgtaacctgagccctccgatggtatcagtctgaaagatcta
caggactgctttgtgtagtctcctttaagctctggattaattatgctgta
actctttctatttctttgtcactcacactgctttcaacttcctgtctctt
atctcccacttagtctgcctgctgcagctcttcacattttactatgagtt
atcacagtgagagtagctgcttgcttcattcttgttttgaacaatgccag
tacagactcagtggtttaatttactggcagtggttttacctctgtttcat
gtgtgttagatgggtctatggatatatatttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_34019442_34020522
seq2: B6Ng01-094O13.b_47_1111 (reverse)

seq1  CCTCAGAGTTAGTTATGGTCTGTGTTGATAATTTCATGTTTGCAAGTTAG  50
      |||||||| ||| |||||||||||||||||| ||||||||||| |||   
seq2  CCTCAGAG-TAG-TATGGTCTGTGTTGATAA-TTCATGTTTGC-AGT--A  44

seq1  GTAAATATTTCATAAAAGAGAAATGAGTTTGTTGTTAGAATTGAAGCTGA  100
      |||||||||||||||||||| ||||||||||||||||||| |||||||||
seq2  GTAAATATTTCATAAAAGAG-AATGAGTTTGTTGTTAGAA-TGAAGCTGA  92

seq1  GCTCTGAGCCTCCCATTTTACGTTTATCTCTTGGCACAAACATATTTGTT  150
      |||||||| |||||| |||||||||||||| |||||||||||||||   |
seq2  GCTCTGAG-CTCCCA-TTTACGTTTATCTC-TGGCACAAACATATT--GT  137

seq1  TTCAGTAGAATTTTTCTTTACTAATTCCTAATTACTTTCTTGAGGCAAAA  200
      |||||||||| ||||||||||||| |||||||||| ||||||||||||||
seq2  TTCAGTAGAA-TTTTCTTTACTAA-TCCTAATTAC-TTCTTGAGGCAAAA  184

seq1  TTCCAAATATTCACGATTAATTTTTATTAATATATTGAATTTCCTCAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAATATTCACGATTAATTTTTATTAATATATTGAATTTCCTCAATG  234

seq1  CCTCTACCTTAGAAAAGTAATTAGAAATTTAATTTTTGTAGGCAGTAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTACCTTAGAAAAGTAATTAGAAATTTAATTTTTGTAGGCAGTAGTA  284

seq1  ATAACCAATTTTAACCTCTATCACATATTTTCTTTCTTATAGTTTAATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCAATTTTAACCTCTATCACATATTTTCTTTCTTATAGTTTAATTA  334

seq1  GTTCTGGTGTAAATTTATGAAAGATTGTAGCAGGAGAAGTTGCTCAACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGTGTAAATTTATGAAAGATTGTAGCAGGAGAAGTTGCTCAACCA  384

seq1  AAGCAAGAGCTGTGTCCAGTGAATAGAATAACAAATTGATTCCCATGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGAGCTGTGTCCAGTGAATAGAATAACAAATTGATTCCCATGGGC  434

seq1  TGATAAAAGCCACTCTATCTAGTGGCTGGGTTTTCACATAACTTCTCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAAGCCACTCTATCTAGTGGCTGGGTTTTCACATAACTTCTCTTG  484

seq1  ACAGGCCATTTGGGAAAGATCAGCGCTTAGCATTCACTTGGGAAAGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCCATTTGGGAAAGATCAGCGCTTAGCATTCACTTGGGAAAGGAAA  534

seq1  AGAAGTCTAATGTAAGAACACTTCTATATGTCTTAAAGGTATATCAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTCTAATGTAAGAACACTTCTATATGTCTTAAAGGTATATCAGAAG  584

seq1  CAGTATTAGGATCCATTCAAGGCTGGATATATTATAGGGATGTCTTTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTAGGATCCATTCAAGGCTGGATATATTATAGGGATGTCTTTCAC  634

seq1  AGGTTAATTGTTAGAGTTCATCTTAATTCAGAGGAAACAAGAATCAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAATTGTTAGAGTTCATCTTAATTCAGAGGAAACAAGAATCAGAGA  684

seq1  AAAAAGTAGGCATCCAATCTTTGCCTATGATTTCCACGTACTGTAGTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTAGGCATCCAATCTTTGCCTATGATTTCCACGTACTGTAGTATA  734

seq1  CAACTTAAATCTGATTCTGTGAGAAGAGTCACTTGATAGATCATTAGTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTAAATCTGATTCTGTGAGAAGAGTCACTTGATAGATCATTAGTGG  784

seq1  TACATTTTATGTTGACATGTTACATCTTTTCAGGGGGGACATTTGTATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTATGTTGACATGTTACATCTTTTCAGGGGGGACATTTGTATGA  834

seq1  GACCAAGACTATGTTAAATCTTCTAGTGGCCAATTGGATTTAAAATGAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGACTATGTTAAATCTTCTAGTGGCCAATTGGATTTAAAATGAGG  884

seq1  GCAACTATTTACCCCTGAAAGCCACTCTGTTAAGTTAGATTTGCACTGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTATTTACCCCTGAAAGCCACTCTGTTAAGTTAGATTTGCACTGTT  934

seq1  GCCAATACATGCATCCATTCACTAGCTTGCTGTGTACCAGGTCCTGAGCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATACATGCATCCATTCACTAGCTTGCTGTGTACCAGGTCCTGAGCC  984

seq1  AGCCAGGTCTTGAGTCTTGTAGGGAAAGACTGCTGCAAGAGATGGCTCAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGTCTTGAGTCTTGTAGGGAAAGACTGCTGCAAGAGATGGCTCAG  1034

seq1  CATTGCCCACAGTTTCTTCTGGGAGGAATTC  1081
      |||||||||||||||||||||||||||||||
seq2  CATTGCCCACAGTTTCTTCTGGGAGGAATTC  1065

seq1: chr4_33912215_33913378
seq2: B6Ng01-094O13.g_70_1202

seq1  GAATTCAGAAAATTTCCTTTTAAAATATTTCACTGAAACATTAAAAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAAATTTCCTTTTAAAATATTTCACTGAAACATTAAAAATAA  50

seq1  TTAGGACCTGAAGCACTGATTCAAAACACATTGTGTTCCAAATGCCTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGACCTGAAGCACTGATTCAAAACACATTGTGTTCCAAATGCCTTTT  100

seq1  GATGAAATAATTTTTTTTTTTGAGACATGGCTTCTATAGCCCAAGTTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAATAATTTTTTTTTTTGAGACATGGCTTCTATAGCCCAAGTTGGT  150

seq1  CTCCATCTCTCGATGGGTGATCTTTCTGCCTAAGTCTCTCAAATGCTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCTCTCGATGGGTGATCTTTCTGCCTAAGTCTCTCAAATGCTGGA  200

seq1  ATTGCAAGCATGAGCCACCATGCCCAGTTCTTTTTAATACCATGGCTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAAGCATGAGCCACCATGCCCAGTTCTTTTTAATACCATGGCTCTT  250

seq1  CTTTCTTTACTCAGGCTTGAAAGACTATTCCCATCTACTGTGCAATTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTACTCAGGCTTGAAAGACTATTCCCATCTACTGTGCAATTATA  300

seq1  TATGGCTATAGCTTTGCTCATTTTCACAGGGTTTCAACATTTCTCTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCTATAGCTTTGCTCATTTTCACAGGGTTTCAACATTTCTCTTTAA  350

seq1  GCACCAGATCCCTTGATCTGTGCCTCATTTTTAACTCCTTTGTTAGATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAGATCCCTTGATCTGTGCCTCATTTTTAACTCCTTTGTTAGATGG  400

seq1  GTCCCCAAGATTGTGGCTATGTTCATGGACATCTTTATTTTGGTTGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCAAGATTGTGGCTATGTTCATGGACATCTTTATTTTGGTTGAGAG  450

seq1  CAACAACAGGGAAAGACTCCAAACACCCAAGGGACCAGCAAAGACAACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACAGGGAAAGACTCCAAACACCCAAGGGACCAGCAAAGACAACAT  500

seq1  GCTTGGACTTCAGGGAGGGAGTCAGAGGGTTAGTCTCTGTTTGAAGTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGACTTCAGGGAGGGAGTCAGAGGGTTAGTCTCTGTTTGAAGTGCA  550

seq1  CACACTTGCACAGGGGGAGGTGGTAAGTTTGCAATACCTCATCAGAAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTGCACAGGGGGAGGTGGTAAGTTTGCAATACCTCATCAGAAGTC  600

seq1  TGACATAAGCACACCTCAGTTTAATTCTCTAGATCTGGTTTTTGGTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATAAGCACACCTCAGTTTAATTCTCTAGATCTGGTTTTTGGTTTTT  650

seq1  TCTTTTTCATTGCTTGAGAAAGAATATGAGTCTTTACATTCCTATGATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCATTGCTTGAGAAAGAATATGAGTCTTTACATTCCTATGATTT  700

seq1  TCCTGCTTGTCCCTGACCATGCACTTGGACACATTATCATTTGCTTTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTTGTCCCTGACCATGCACTTGGACACATTATCATTTGCTTTGTC  750

seq1  TCTCATCTCTTTTTTATTCTTCCCCCTTCCCATCTCCAGCTAATCTCGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCTCTTTTTTATTCTTCCCCCTTCCCATCTCCAGCTAATCTCGAT  800

seq1  CTTAGCATGTGTAACCTGAGCCCTCCGATGGTATCAGTCTGAAAGATCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCATGTGTAACCTGAGCCCTCCGATGGTATCAGTCTGAAAGATCTA  850

seq1  CAGGACTGCTTTGTGTAGGTCTCCTTTTAAGCTCTGGATTAATTATGCTG  900
      ||||||||||||||||| |||||| |||||||||||||||||||||||||
seq2  CAGGACTGCTTTGTGTA-GTCTCC-TTTAAGCTCTGGATTAATTATGCTG  898

seq1  TAACTCTTTCTATTTCTTTGTCCACTCAACACTGCTTTCAACTTCCTGTC  950
      ||||||||||||||||||||| ||||| ||||||||||||||||||||||
seq2  TAACTCTTTCTATTTCTTTGT-CACTC-ACACTGCTTTCAACTTCCTGTC  946

seq1  TCTTATCTCACACTTAGTTCTGCCTGCTGCAAGCCTCCTTCACATTTTAC  1000
      ||||||||| ||||||| |||||||||||| |||   |||||||||||||
seq2  TCTTATCTCCCACTTAG-TCTGCCTGCTGC-AGC--TCTTCACATTTTAC  992

seq1  TTAATGAGTTATCACAGTGAGAGGTAGCTGGCCTGCCTTCAATGTCCTGT  1050
      |  ||||||||||||||||||| |||||||  ||  |||||   || |||
seq2  T--ATGAGTTATCACAGTGAGA-GTAGCTG--CTTGCTTCA--TTCTTGT  1035

seq1  TTTGGAAACAATGCCCCAGTAAACAGACTCACGTGTGTTCATTTACTGGC  1100
      ||||  |||||||  |||||  ||||||||| |||  || ||||||||| 
seq2  TTTG--AACAATG--CCAGT--ACAGACTCA-GTGGTTTAATTTACTGG-  1077

seq1  CAGTGGTTTTTCACCTCCTGTTTCATGTGTGTAGGAATGGGTCTACTGGG  1150
      ||||||||||  |||| |||||||||||||||  | ||||||||| ||| 
seq2  CAGTGGTTTT--ACCT-CTGTTTCATGTGTGTTAG-ATGGGTCTA-TGGA  1122

seq1  TATATATATATTCC  1164
      |||||||   ||||
seq2  TATATAT---TTCC  1133