BAC Information

Click to search

BAC

Clone NameB6Ng01-095K11
Chromosome4 (Build37)
Map Location 50,112,631 - 50,113,804
singlet/doubletsinglet
Overlap genenone
Upstream geneE130309F12Rik, LOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2, LOC666663
Downstream geneLOC100040979
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095K11.bB6Ng01-095K11.g
ACCDH906532DH906533
length1,1711,148
definitionDH906532|Mus musculus domesticus DNA, BAC clone: B6Ng01-095K11, 5' end.DH906533|Mus musculus domesticus DNA, BAC clone: B6Ng01-095K11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttggtttttctctgcacctcatttttaatagtattatttgattc
tctagagtctaacttcttgagtttttatatacatagaatattagtcctct
attggatataagattagtaaagatagtttctcaatctgttggttgttgtt
ttgtcctattaacagtgtactttcccttacagaagcttgcgactttatga
ggtcccatttgtcgattgttgatcttagagcataagccattaattttctg
ttcaggaaaatttcccttggttttttttggacatactcagagctatgagt
tttcctcttagcactgctttcattgtgtcctatatgtttgggtgtgttat
accttcatttttattaaattctaaaaagtctttaatttctttcttaacca
aattatctttgagtagagtgttctgcagcttccatgtgtatgtgggctat
ctgttattattgttgttattgaagaccagcattagtccgtggtgatatga
taggttgcatgtaattattcaatctccttgtatctgtgagatctgtttta
tgaccaatttacggtcaatattagagaagatgccatgaggtgctgaaaag
atttgttttaggataaaatattctatagatatttgttaaaaccatttgtt
tcataacttctgttagtttcactgtgtctctgtttagtttctgtttccat
aatctgttcattgatgagagtggggtgttgaaatctcccactattattgt
gtgaggtgcaatgtgtgctttgagctttagtaaagcttcttttatgaatg
tgggtgcccttgcatttggagcacagatagtcagaattgagagttcatct
tgctaattttcttcctttgacgtgtatgaagtgtcctttccttatcgttt
tgataacttttggttgaaagtcaatttcatttgctattagaatggctaat
ccagctgcttcttgggaccatttgcttggaaatgttaaggaattttcttc
tataatttgtaagatattgctgatctttaagtgggaattttgctctcttc
ttactatatcttaggttggtctctcatggcctggaattcctggatgtttg
ggttaggagctttgcaattgcattggcttgcaaggtgtctatggatactc
tcgaaccggagaactcattct
gaattcttagaaacaattttctaaagaaaatctctcaatctagttttctc
taagaagctgtctctgtgtccagtagccagcagggatgtgttcgtattag
tttttgactgtgggtagtttgtggtgctgccaagactgatctggactcac
agagggaatctgatccatctagcagtcatgtccgtagttataagagttgg
tttttttaggatttggtctaaaagccagtgcactgagttccaaagaaaat
acttcatttcttggggggaaagtcactaaatcaaatgtgacaagccacta
ggaggtcaatgtttttttcttttctctaggacattttctctttgtcactt
atgagggatgggaacataagctatatcaatggaatagactcctattaagt
cctcagcttatttacagatggattctttcctaataaaaactgggtcagat
aggcttgtttaaaaaatgtggtggtttgaagatatacctgagaaacttta
gtattttcttaagaatgttaaaaaccaaaatatgtttttgttgacttgta
acattgagtttggccctgaacaaaatctacagtggaattattgtaaaatg
agaagcactgaaatagaacacagtcgaaaatagatttttttagtgagttt
ttatcagttgattggtctagggatctattacaatttaacaggtgaaggaa
aatctttaagaatttttagtattttactgtgagatatttattgtacagac
aggagcttacatctatggactttcttttttgataattctcttatacattc
agattagtgagaaaggaggcatgaacaattttctcagactgtaattttat
tctgccaagaatttatattttttttttacccaccagtattgttctctatt
atctgtcttctcaagggaaaatagttgtttatatgggtgaaactggtcac
tgatcgtgtcaattgttcacaggtaaagttacagtactgtgaaatataga
acagtctctgcactgcaacatttggaagctagacaccaaatctgtcatcc
tgcttgacttctatgtgaaagatgatacttatgaattacatgaatgttaa
ttattgcttgttcaagtagttctcctggaaagatcctataggtttata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_50112631_50113804
seq2: B6Ng01-095K11.g_67_1214

seq1  GAATTCTTAGAAACAATTTTCTAAAGAAAATCTCTCAATCTAGTTTTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGAAACAATTTTCTAAAGAAAATCTCTCAATCTAGTTTTCTC  50

seq1  TAAGAAGCTGTCTCTGTGTCCAGTAGCCAGCAGGGATGTGTTCGTATTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGCTGTCTCTGTGTCCAGTAGCCAGCAGGGATGTGTTCGTATTAG  100

seq1  TTTTTGACTGTGGGTAGTTTGTGGTGCTGCCAAGACTGATCTGGACTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGACTGTGGGTAGTTTGTGGTGCTGCCAAGACTGATCTGGACTCAC  150

seq1  AGAGGGAATCTGATCCATCTAGCAGTCATGTCCGTAGTTATAAGAGTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAATCTGATCCATCTAGCAGTCATGTCCGTAGTTATAAGAGTTGG  200

seq1  TTTTTTTAGGATTTGGTCTAAAAGCCAGTGCACTGAGTTCCAAAGAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAGGATTTGGTCTAAAAGCCAGTGCACTGAGTTCCAAAGAAAAT  250

seq1  ACTTCATTTCTTGGGGGGAAAGTCACTAAATCAAATGTGACAAGCCACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATTTCTTGGGGGGAAAGTCACTAAATCAAATGTGACAAGCCACTA  300

seq1  GGAGGTCAATGTTTTTTTCTTTTCTCTAGGACATTTTCTCTTTGTCACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTCAATGTTTTTTTCTTTTCTCTAGGACATTTTCTCTTTGTCACTT  350

seq1  ATGAGGGATGGGAACATAAGCTATATCAATGGAATAGACTCCTATTAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGGATGGGAACATAAGCTATATCAATGGAATAGACTCCTATTAAGT  400

seq1  CCTCAGCTTATTTACAGATGGATTCTTTCCTAATAAAAACTGGGTCAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCTTATTTACAGATGGATTCTTTCCTAATAAAAACTGGGTCAGAT  450

seq1  AGGCTTGTTTAAAAAATGTGGTGGTTTGAAGATATACCTGAGAAACTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGTTTAAAAAATGTGGTGGTTTGAAGATATACCTGAGAAACTTTA  500

seq1  GTATTTTCTTAAGAATGTTAAAAACCAAAATATGTTTTTGTTGACTTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTCTTAAGAATGTTAAAAACCAAAATATGTTTTTGTTGACTTGTA  550

seq1  ACATTGAGTTTGGCCCTGAACAAAATCTACAGTGGAATTATTGTAAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGAGTTTGGCCCTGAACAAAATCTACAGTGGAATTATTGTAAAATG  600

seq1  AGAAGCACTGAAATAGAACACAGTCGAAAATAGATTTTTTTAGTGAGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCACTGAAATAGAACACAGTCGAAAATAGATTTTTTTAGTGAGTTT  650

seq1  TTATCAGTTGATTGGTCTAGGGATCTATTACAATTTAACAGGTGAAGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGTTGATTGGTCTAGGGATCTATTACAATTTAACAGGTGAAGGAA  700

seq1  AATCTTTAAGAATTTTTAGTATTTTACTGTGAGATATTTATTGTACAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTAAGAATTTTTAGTATTTTACTGTGAGATATTTATTGTACAGAC  750

seq1  AGGAGCTTACATCTATGGACTTTCTTTTTTGATAATTCTCTTATACATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTTACATCTATGGACTTTCTTTTTTGATAATTCTCTTATACATTC  800

seq1  AGATTAGTGAGAAAGGAGGCATGAACAATTTTCTCAGACTGTAATTTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAGTGAGAAAGGAGGCATGAACAATTTTCTCAGACTGTAATTTTAT  850

seq1  TCTGCCAAGAATTTATATTTTTTTTTTACACACCAGTATTGTTCTCTATT  900
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCTGCCAAGAATTTATATTTTTTTTTTACCCACCAGTATTGTTCTCTATT  900

seq1  ATCTGTTCTTCTCAAGGGAAAATAGTTGTTTATATGGTTGAAACTGGTCA  950
      ||||| ||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATCTG-TCTTCTCAAGGGAAAATAGTTGTTTATATGGGTGAAACTGGTCA  949

seq1  CTGATCGTGGTCCAATTGTTCACAGGTAAAGTTACAGTACTGTGAAAATA  1000
      |||||||||   |||||||||||||||||||||||||||||||| |||||
seq2  CTGATCGTG--TCAATTGTTCACAGGTAAAGTTACAGTACTGTG-AAATA  996

seq1  TAGAAACCAGTTCTCTGCACTGCAACATTTGAAAGCTAAGACAACCAAAT  1050
      |||||  ||| |||||||||||||||||||| ||||| |||| |||||||
seq2  TAGAA--CAG-TCTCTGCACTGCAACATTTGGAAGCT-AGAC-ACCAAAT  1041

seq1  TCTTGTCATTCCTGCTTGACTTCTATGTAGAAGAATTGATAAACTAATAA  1100
         ||||| |||||||||||||||||||  ||||  ||||  ||| || |
seq2  --CTGTCA-TCCTGCTTGACTTCTATGTGAAAGA--TGAT--ACTTATGA  1084

seq1  AAATATACAATGAATGTCTAATTAATTTGCTTGTTCTAGGTAGTTCTCCT  1150
      |    ||| |||||||| ||||||  |||||||||| | |||||||||||
seq2  A---TTAC-ATGAATGT-TAATTA--TTGCTTGTTC-AAGTAGTTCTCCT  1126

seq1  TGAAAATGATCCTTATA-GTTTATA  1174
       ||||  ||||| |||| |||||||
seq2  GGAAA--GATCC-TATAGGTTTATA  1148