BAC Information

Click to search

BAC

Clone NameB6Ng01-095N21
Chromosome4 (Build37)
Map Location 8,275,712 - 8,456,087
singlet/doubletdoublet
Overlap geneLOC100039505, LOC100039478
Upstream geneCar8, LOC100039494
Downstream geneRab2, EG666752, LOC666760, Chd7, LOC666782, LOC100039584, 4933402J24Rik, Asph
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095N21.bB6Ng01-095N21.g
ACCDH906689DH906690
length1,1521,192
definitionDH906689|Mus musculus domesticus DNA, BAC clone: B6Ng01-095N21, 5' end.DH906690|Mus musculus domesticus DNA, BAC clone: B6Ng01-095N21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,275,712 - 8,276,898)(8,454,873 - 8,456,087)
sequence
gaattctcactttctaagttgtgacttctgtcccaaaacattctcctctc
taaaccagcagtgacctagagacaagaatcttgctgcctttcaaagtttt
cttttctttctttcttccatcctttcatcctttctctttcttccttcctt
ccttccttccttccttccttcctttctttctttctttctcttctttcttt
ctttctctcctttctttctttctctcctttctcttctttctttctttctt
tctttctttctttctttctttctctccttccttccttcctttctttcttt
ctttctcttctttctttctttctctcctttctcttctttctttctttctt
tctttctttctttctttctttctttctttctttctttcagacaggctctc
cttgtctagctcgtgtagctctgactatcctgaaactcactctgtagtcc
aggctgcctgcaactctcaaagatccacctaccctagcctcccaggttct
gggattaaaggcatgcacaatcatatccagcattttttaaacttaaaaaa
aaaaccaaaaagaaactctggcttttggaaagtagaatttatggatagaa
tgctattatttgtacataaataaagccctttctaaagtttaaaaaaaaaa
gtgtttgtatttaaccttttcatctcttccacgatctttattttactttt
ttttaaatggaggaataataattttattttttattaaactaataaaatat
ttgaaaatatgcaactcaatattaatgtagttttaagtcatcaaaataat
ttataatagttaaatgcctcttaaatatacctgatatcttccaaagctaa
aactaatatgcactcaactagcttttagatctatttggaactttaaaatg
atagagctagaaaaaaatctctatgagtcctgtatgaaagaaattgtgaa
agtcctgatagacagaaactattcatctccaaggagaggactcagcttac
tgtggcgtcacagaatgagtgggtagtgctcctttgttttgtattttctg
atagttcgaaagaatggcactcgcttctttgagctgatatttcctgcact
aaacaatctgtctgaagttttgttggaactgatgactgctctatttcttt
gg

gaattctaggatcatggacatttgctaccaggtctgtctttgatcttcac
tcatttcttaatttaaaatatctagaagtcatttcttaagaacactaaat
atggtgatatatgcctttgatcccaatatctgtgaggctgagacaggtca
ttgtgagttcaaggccaccctgggcttcataatactagggcagctacagc
aatgcagccagaccctgccccacccccaaaaggaacgaaaaatgaataga
ttatgaaaaagtaaagcataaccctagacaagaaagttttggggttttcc
acatttggggttttgtgcatcaagaatctatgctggtgctatgcccatct
attcctacaacttgggaggcattggtacaaggattgggagttttgggtca
tccccagctcatagtgagtttcaggctaccctgggctacaagacacccca
tcttgtaacaaaacaacaaacaaaataaaatccaaaacagaaatctaaga
ctagttttgctgggaattctgttttaaggaaccattgggtggcatttcat
tcctcggccagggcaatgggatggtgatggctgttggcaaaggtctcagt
tctttgccaggtgactctctccttacaaccaaatgagtgttctcatggca
aggcactagattcttccaaagtgtgcattctgagacagaacaaaataaac
tctcaatattgtcttatgtctagcttcaaaacatgctattaattctgtgt
ccagttgttcccatagatcagccctgggacaatgcacgtggaggcattaa
caccagatgcagaggcacttgagagtcatcttggttcctaaccattatga
gcccgaagacatagagaagtgacagtgactccgagctgtccagtgtggca
ccggaaactgaagtcagtcctctacagagcagtacatggttttactgctg
agctgtctcttccagctcttcactgacatattttaataaaaatagaaaac
ctgagatactccactcagtttgtctgcctctcatctacttatttttttaa
tttttttattctggcatggatgggtatatgtggggaattgaatgccccac
gatctagacctgactccgatccataggaacttggccagtaccgtatccgt
atgagcgaacttgcagcatcttatccctgtcactcctcatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_8275712_8276898
seq2: B6Ng01-095N21.b_47_1198

seq1  GAATTCTCACTTTCTAAGTTGTGACTTCTGTCCCAAAACATTCTCCTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACTTTCTAAGTTGTGACTTCTGTCCCAAAACATTCTCCTCTC  50

seq1  TAAACCAGCAGTGACCTAGAGACAAGAATCTTGCTGCCTTTCAAAGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCAGCAGTGACCTAGAGACAAGAATCTTGCTGCCTTTCAAAGTTTT  100

seq1  CTTTTCTTTCTTTCTTCCATCCTTTCATCCTTTCTCTTTCTTCCTTCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTCTTTCTTCCATCCTTTCATCCTTTCTCTTTCTTCCTTCCTT  150

seq1  CCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTCTTCTTTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTCTTCTTTCTTT  200

seq1  CTTTCTCTCCTTTCTTTCTTTCTCTCCTTTCTCTTCTTTCTTTCTTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTCCTTTCTTTCTTTCTCTCCTTTCTCTTCTTTCTTTCTTTCTT  250

seq1  TCTTTCTTTCTTTCTTTCTTTCTCTCCTTCCTTCCTTCCTTTCTTTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTTCTTTCTCTCCTTCCTTCCTTCCTTTCTTTCTTT  300

seq1  CTTTCTCTTCTTTCTTTCTTTCTCTCCTTTCTCTTCTTTCTTTCTTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTTCTTTCTTTCTTTCTCTCCTTTCTCTTCTTTCTTTCTTTCTT  350

seq1  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCAGACAGGCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCAGACAGGCTCTC  400

seq1  CTTGTCTAGCTCGTGTAGCTCTGACTATCCTGAAACTCACTCTGTAGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTAGCTCGTGTAGCTCTGACTATCCTGAAACTCACTCTGTAGTCC  450

seq1  AGGCTGCCTGCAACTCTCAAAGATCCACCTACCCTAGCCTCCCAGGTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCCTGCAACTCTCAAAGATCCACCTACCCTAGCCTCCCAGGTTCT  500

seq1  GGGATTAAAGGCATGCACAATCATATCCAGCATTTTTTAAACTTAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTAAAGGCATGCACAATCATATCCAGCATTTTTTAAACTTAAAAAA  550

seq1  AAAACCAAAAAGAAACTCTGGCTTTTGGAAAGTAGAATTTATGGATAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAAAAGAAACTCTGGCTTTTGGAAAGTAGAATTTATGGATAGAA  600

seq1  TGCTATTATTTGTACATAAATAAAGCCCTTTCTAAAGTTTAAAAAAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTATTTGTACATAAATAAAGCCCTTTCTAAAGTTTAAAAAAAAAA  650

seq1  GTGTTTGTATTTAACCTTTTCATCTCTTCCACGATCTTTATTTTACTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGTATTTAACCTTTTCATCTCTTCCACGATCTTTATTTTACTTTT  700

seq1  TTTTAAATGGAGGAATAATAATTTTATTTTTTATTAAACTAATAAAATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATGGAGGAATAATAATTTTATTTTTTATTAAACTAATAAAATAT  750

seq1  TTGAAAATATGCAACTCAATATTAATGTAGTTTTAAGTCATCAAAATAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATATGCAACTCAATATTAATGTAGTTTTAAGTCATCAAAATAAT  800

seq1  TTATAATAGTTAAATGCCTCTTAAATATACCTGATATCTTCCAAAGCTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATAGTTAAATGCCTCTTAAATATACCTGATATCTTCCAAAGCTAA  850

seq1  AACTAATATGCACTCAACTAGCTTTTAGATCTATTTGGAACTTTAAAAAT  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AACTAATATGCACTCAACTAGCTTTTAGATCTATTTGGAACTTT-AAAAT  899

seq1  GATAGAGCTAGAAAAAAAATCTCTTATGAAGTCCTGTATGAAAGGAAATT  950
      ||||||||||| ||||||||||| |||| |||||||||||||| ||||||
seq2  GATAGAGCTAG-AAAAAAATCTC-TATG-AGTCCTGTATGAAA-GAAATT  945

seq1  GTGAAAAGTTCCTGATTAGACAGAAACTATTCCATCTCCAAGGGAGAGGA  1000
      ||||||   |||||| ||||||||||||||| ||||||||| ||||||||
seq2  GTGAAA--GTCCTGA-TAGACAGAAACTATT-CATCTCCAA-GGAGAGGA  990

seq1  CTCAGCTTAACTGTGGCGTCACAGAATGAGTTGGGTAGTGCTCCTTTTGT  1050
      |||||||| ||||||||||||||||||||| ||||||||||||||||  |
seq2  CTCAGCTT-ACTGTGGCGTCACAGAATGAG-TGGGTAGTGCTCCTTTGTT  1038

seq1  TTGTATTTTCTGGAATAGTTCGAAGAGTATTGGCA-TCGGGTCTTCTTTG  1099
      ||||||||||||  |||||||||| || | ||||| |||   ||||||||
seq2  TTGTATTTTCTG--ATAGTTCGAA-AG-AATGGCACTCG---CTTCTTTG  1081

seq1  AAGGTCTGATAATATTCTGCACTAAACCCATCTGGTCCTGGGATGTTTTT  1149
      |    ||||| || | |||||||||| | |||||    |  || ||||| 
seq2  A---GCTGAT-ATTTCCTGCACTAAA-CAATCTG----TCTGAAGTTTT-  1121

seq1  GGTTGGGAGACTTGTAATGACTGCTTCTATTTCTTTGG  1187
       ||||| |      | |||||||| |||||||||||||
seq2  -GTTGGAA-----CTGATGACTGC-TCTATTTCTTTGG  1152


seq1: chr4_8454873_8456087
seq2: B6Ng01-095N21.g_66_1257 (reverse)

seq1  ACATGAGGAGTGACAGGTGTTAGGATGGGCTGGCAAGTCCGCTCAT-CAG  49
      ||||||||||||||||| | || |||  ||| |||||| ||||||| | |
seq2  ACATGAGGAGTGACAGG-GATAAGAT--GCT-GCAAGTTCGCTCATACGG  46

seq1  ATACAGGTACTTGCTGCCAAG-TCCTAT-GATCTGAGTTCAAGTCCTAGA  97
      |||| ||||||    |||||| |||||| |||| ||| ||| || |||||
seq2  ATAC-GGTACT---GGCCAAGTTCCTATGGATCGGAG-TCAGGT-CTAGA  90

seq1  TCCTGTGGCATATCCATATCCCACATATAACCCATCAATGGCAGAATAAA  147
      || || ||||| || ||  ||||||||| ||||||| ||| |||||||||
seq2  TCGTGGGGCAT-TCAATTCCCCACATAT-ACCCATCCATGCCAGAATAAA  138

seq1  AAAAATTAAAAAAAATAAGTAGAATGAAGAGGCAGACAAAACTGAGTGAA  197
      ||||  | |||||||||||||| ||| |||||||||| |||||||||| |
seq2  AAAA--TTAAAAAAATAAGTAG-ATG-AGAGGCAGAC-AAACTGAGTGGA  183

seq1  GTATCTCAGGGTTTTTCCTATTTTTATTTAAAATATTGTCAGTGAGGAGC  247
      ||||||||||   ||| ||||||||| |||||||| ||||||||| ||||
seq2  GTATCTCAGG---TTTTCTATTTTTA-TTAAAATA-TGTCAGTGAAGAGC  228

seq1  TGG-AGAGACAGCTCAGCAGTTAAAACCATGTACTGCTCTTGTAGAGGAC  296
      ||| |||||||||||||||| |||||||||||||||||| ||||||||| 
seq2  TGGAAGAGACAGCTCAGCAG-TAAAACCATGTACTGCTC-TGTAGAGGA-  275

seq1  CTGACTTCAGTTTCCGGTGCCCACACTGGACAGCTCGGAGTCACCTGTCA  346
      ||||||||||||||||||| ||||||||||||||||||||||| ||||||
seq2  CTGACTTCAGTTTCCGGTG-CCACACTGGACAGCTCGGAGTCA-CTGTCA  323

seq1  CTTCTCTATGTCTTCGGGCTCATAATGGTTAGGAACCAAGATGACTCTCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTATGTCTTCGGGCTCATAATGGTTAGGAACCAAGATGACTCTCA  373

seq1  AGTGCCTCTGCATCTGGTGTTAATGCCTCCACCTGCATTGTCCCAGGGCT  446
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGTGCCTCTGCATCTGGTGTTAATGCCTCCACGTGCATTGTCCCAGGGCT  423

seq1  GATCTATGGGAACAACTGGACACAGAATTAATAGCATGTTTTGAAGCTAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTATGGGAACAACTGGACACAGAATTAATAGCATGTTTTGAAGCTAG  473

seq1  ACATAAGACAATATTGAGAGTTTATTTTGTTCTGTCTCAGAATGCACACT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGACAATATTGAGAGTTTATTTTGTTCTGTCTCAGAATGCACACT  523

seq1  TTGGAAGAATCTAGTGCCTTGCCATGAGAACACTCATTTGGTTGTAAGGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGAATCTAGTGCCTTGCCATGAGAACACTCATTTGGTTGTAAGGA  573

seq1  GAGAGTCACCTGGCAAAGAACTGAGACCTTTGCCAACAGCCATCACCATC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTCACCTGGCAAAGAACTGAGACCTTTGCCAACAGCCATCACCATC  623

seq1  CCATTGCCCTGGCCGAGGAATGAAATGCCACCCAATGGTTCCTTAAAACA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGCCCTGGCCGAGGAATGAAATGCCACCCAATGGTTCCTTAAAACA  673

seq1  GAATTCCCAGCAAAACTAGTCTTAGATTTCTGTTTTGGATTTTATTTTGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGCAAAACTAGTCTTAGATTTCTGTTTTGGATTTTATTTTGT  723

seq1  TTGTTGTTTTGTTACAAGATGGGGTGTCTTGTAGCCCAGGGTAGCCTGAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTTTGTTACAAGATGGGGTGTCTTGTAGCCCAGGGTAGCCTGAA  773

seq1  ACTCACTATGAGCTGGGGATGACCCAAAACTCCCAATCCTTGTACCAATG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTATGAGCTGGGGATGACCCAAAACTCCCAATCCTTGTACCAATG  823

seq1  CCTCCCAAGTTGTAGGAATAGATGGGCATAGCACCAGCATAGATTCTTGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCAAGTTGTAGGAATAGATGGGCATAGCACCAGCATAGATTCTTGA  873

seq1  TGCACAAAACCCCAAATGTGGAAAACCCCAAAACTTTCTTGTCTAGGGTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAAAACCCCAAATGTGGAAAACCCCAAAACTTTCTTGTCTAGGGTT  923

seq1  ATGCTTTACTTTTTCATAATCTATTCATTTTTCGTTCCTTTTGGGGGTGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTACTTTTTCATAATCTATTCATTTTTCGTTCCTTTTGGGGGTGG  973

seq1  GGCAGGGTCTGGCTGCATTGCTGTAGCTGCCCTAGTATTATGAAGCCCAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGTCTGGCTGCATTGCTGTAGCTGCCCTAGTATTATGAAGCCCAG  1023

seq1  GGTGGCCTTGAACTCACAATGACCTGTCTCAGCCTCACAGATATTGGGAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCCTTGAACTCACAATGACCTGTCTCAGCCTCACAGATATTGGGAT  1073

seq1  CAAAGGCATATATCACCATATTTAGTGTTCTTAAGAAATGACTTCTAGAT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCATATATCACCATATTTAGTGTTCTTAAGAAATGACTTCTAGAT  1123

seq1  ATTTTAAATTAAGAAATGAGTGAAGATCAAAGACAGACCTGGTAGCAAAT  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAATTAAGAAATGAGTGAAGATCAAAGACAGACCTGGTAGCAAAT  1173

seq1  GTCCATGATCCTAGAATTC  1215
      |||||||||||||||||||
seq2  GTCCATGATCCTAGAATTC  1192


| Home | SequenceCutter | Blast | Download |