BAC Information

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BAC

Clone NameB6Ng01-095O04
ChromosomeY (Build37)4 (Build37)
Map Location 2,652,635 - 2,652,7037,098,293 - 7,099,372
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244
Downstream geneLOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095O04.bB6Ng01-095O04.g
ACCDH906701DH906702
length9791,067
definitionDH906701|Mus musculus domesticus DNA, BAC clone: B6Ng01-095O04, 5' end.DH906702|Mus musculus domesticus DNA, BAC clone: B6Ng01-095O04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(2,652,635 - 2,652,703)(7,098,293 - 7,099,372)
sequence
gaattctcatgggtccccttaggccaacatctcaattatatattgttggg
agccgcccccacattcgccgtcacaagatggcgctgacatcctgtgttct
aagtggtaaacaaataatctgcgcatgtgccaagggtattttacgactac
ttgtactctgcctttcccgtgaacgtcagctcggccatgggctgcagcca
atcagggagtgatgcgtcctaagcgaaggataactcctccttaaagggga
cggggtttccgccattctctctcgctggcatctctctggctctgcgcgcc
ctgcgctctctcgctgcctaaagatgtaaacaatagagcgcgctctgcgc
tttggcgcgctggagctctggctcctaaagatgtaagaagggggtggctt
tcgcttttggggctgggggtttgcgctcctggctcctgaagatgtaagca
ataaagttttgtcacagaagattctggtttgttgtgttctttcctggccg
ggcgcgtgagaacgcgaataagaattggtgccgaaatccgggacgagaaa
atccgggacgagaaattccgggacgagaaaatccgggaagaggaaaccct
ggaagaaaaactcgggacgagagtttaccatcaccggcgcaaggaagatc
cctcattccagaaccagaactgcgggtcacggtaataaaggttcccgtaa
agcagactgttgagaaggattcaactgcatgaattcagaacttttcagct
ggggaacgagagtaccagtgagtacagctttacgaggtaagtctggtctt
aaactttctaacgaaattcaagacagtctatcagaagtaaagtggaaaat
agctttacaaggtacgcctggccttgaactttctaacgaaattcagacag
tctatcagaagtaaagtggaaaatagcttacaaggtatgtttggcctgac
tttctctagtgtagagccctttgttcttt
gaattcttaaaatgcaggactaaggagagaactcgaagggcaaacatgct
ttctgtgtaagcacaaggacctggatgtgaatgcacagcacccatggaaa
agcctggcacataggatgttaccttagctctttaatgggagacgacaagg
ggagactggatcatgtgcagaaatttggatgaacagctagcatgacagca
caaaacaacaggatgaaaggtgaaaaccagtgcccaaggttgtcctttga
tctatacaggtgcacaaatagcatgtgtctacctgaattcacacacacat
acacacacacacacacacacacacacacaccaactataatgtatagaacc
catgtgtttagtttcttaaaatttatgaaaaaaagtttgccttttcctga
tctaggtcatgttctctatcaggccattttaattattctctgttttatgt
accttgacttgccaatatgttcttagtagaacctcttccccttgctgact
tgcctctccactcagattttcagtggcaggactattcattcaggctcctt
ggtctactattcagagcctaacatataatcttactaccctaagtttaaat
aaatacctatggtttacttcctgtttcagtatcccagagatggctttatg
accactgttctcaggtaagtccactctaggtgcctaagccattcctgtgc
tcaattagtcatggatactttacatcaggaaaccaggatccattgtagtc
ataaactctagcacaagtggatgtagttaaagaagtgaccttttatctct
atggtggttctgctgggaacttattatgactctttctgacatgtaggcta
gcccctaaagcattacacttaagtagaatttcacagtggcccaaggcttt
cctcatgtttatctgagccctggtgatcttcaagttgatgtcctgtcact
gaaaactaatagagaagcccgttcttagttcctgaaactagattctgtga
tattgtctttctatacacaggagtccatgttaatattctctacaattcta
tcatgatgaaatctgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_2652635_2652703
seq2: B6Ng01-095O04.b_117_186

seq1  ACAAGATGGCGCTGATATCCGGTGTTCTAACTGGTAAACAAATAGTCTGC  50
      ||||||||||||||| |||| ||||||||| ||||||||||||| |||||
seq2  ACAAGATGGCGCTGACATCCTGTGTTCTAAGTGGTAAACAAATAATCTGC  50

seq1  GCATGTG-CTGGGGTATTTT  69
      ||||||| |  |||||||||
seq2  GCATGTGCCAAGGGTATTTT  70

seq1: chr4_7098293_7099372
seq2: B6Ng01-095O04.g_67_1133

seq1  GAATTCTTAAAATGCAGGACTAAGGAGAGAACTCGAAGGGCAAACATGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAAATGCAGGACTAAGGAGAGAACTCGAAGGGCAAACATGCT  50

seq1  TTCTGTGTAAGCACAAGGACCTGGATGTGAATGCACAGCACCCATGGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGTAAGCACAAGGACCTGGATGTGAATGCACAGCACCCATGGAAA  100

seq1  AGCCTGGCACATAGGATGTTACCTTAGCTCTTTAATGGGAGACGACAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGCACATAGGATGTTACCTTAGCTCTTTAATGGGAGACGACAAGG  150

seq1  GGAGACTGGATCATGTGCAGAAATTTGGATGAACAGCTAGCATGACAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACTGGATCATGTGCAGAAATTTGGATGAACAGCTAGCATGACAGCA  200

seq1  CAAAACAACAGGATGAAAGGTGAAAACCAGTGCCCAAGGTTGTCCTTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAACAGGATGAAAGGTGAAAACCAGTGCCCAAGGTTGTCCTTTGA  250

seq1  TCTATACAGGTGCACAAATAGCATGTGTCTACCTGAATTCACACACACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATACAGGTGCACAAATAGCATGTGTCTACCTGAATTCACACACACAT  300

seq1  ACACACACACACACACACACACACACACACCAACTATAATGTATAGAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACCAACTATAATGTATAGAACC  350

seq1  CATGTGTTTAGTTTCTTAAAATTTATGAAAAAAAGTTTGCCTTTTCCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTTTAGTTTCTTAAAATTTATGAAAAAAAGTTTGCCTTTTCCTGA  400

seq1  TCTAGGTCATGTTCTCTATCAGGCCATTTTAATTATTCTCTGTTTTATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGTCATGTTCTCTATCAGGCCATTTTAATTATTCTCTGTTTTATGT  450

seq1  ACCTTGACTTGCCAATATGTTCTTAGTAGAACCTCTTCCCCTTGCTGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGACTTGCCAATATGTTCTTAGTAGAACCTCTTCCCCTTGCTGACT  500

seq1  TGCCTCTCCACTCAGATTTTCAGTGGCAGGACTATTCATTCAGGCTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTCCACTCAGATTTTCAGTGGCAGGACTATTCATTCAGGCTCCTT  550

seq1  GGTCTACTATTCAGAGCCTAACATATAATCTTACTACCCTAAGTTTAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTACTATTCAGAGCCTAACATATAATCTTACTACCCTAAGTTTAAAT  600

seq1  AAATACCTATGGTTTACTTCCTGTTTCAGTATCCCAGAGATGGCTTTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCTATGGTTTACTTCCTGTTTCAGTATCCCAGAGATGGCTTTATG  650

seq1  ACCACTGTTCTCAGGTAAGTCCACTCTAGGTGCCTAAGCCATTCCTGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGTTCTCAGGTAAGTCCACTCTAGGTGCCTAAGCCATTCCTGTGC  700

seq1  TCAATTAGTCATGGATACTTTACATCAGGAAACCAGGATCCATTGTAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTAGTCATGGATACTTTACATCAGGAAACCAGGATCCATTGTAGTC  750

seq1  ATAAACTCTAGCACAAGTGGATGTAGTTAAAGAAGTGACCTTTTATCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTCTAGCACAAGTGGATGTAGTTAAAGAAGTGACCTTTTATCTCT  800

seq1  ATGGTGGTTCTGCTGGGAACTTATTATGACTCTTTCTGACATGTAGGCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGTTCTGCTGGGAACTTATTATGACTCTTTCTGACATGTAGGCTA  850

seq1  GCCCCTAAAGCATTACACTTAAGTAGAATTTCACAGGTGGCCCAAGGCTA  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||| 
seq2  GCCCCTAAAGCATTACACTTAAGTAGAATTTCACA-GTGGCCCAAGGCTT  899

seq1  TCCTCATGTTTATCTGAGCCCTGGTGATCTTCAAAGTTGAATGTCCTGTC  950
      |||||||||||||||||||||||||||||||| |||||| ||||||||||
seq2  TCCTCATGTTTATCTGAGCCCTGGTGATCTTC-AAGTTG-ATGTCCTGTC  947

seq1  ACTGAAAACTAATAGAGAAGCCCGTTTCTTAGTTCCTGAAACTAGATTCC  1000
      |||||||||||||||||||||||| ||||||||||||||||||||||| |
seq2  ACTGAAAACTAATAGAGAAGCCCG-TTCTTAGTTCCTGAAACTAGATT-C  995

seq1  TGTTGATAATTGTCTTTCTATAACCACAGGAGGTCCATGTTAATAATTCT  1050
      || |||| ||||||||||||||  ||||||| |||||||||||| |||||
seq2  TG-TGAT-ATTGTCTTTCTATA--CACAGGA-GTCCATGTTAAT-ATTCT  1039

seq1  CTACAATCCTATTCAATGATGACATCTGTT  1080
      ||||||| ||||   ||||||| |||||||
seq2  CTACAATTCTAT--CATGATGAAATCTGTT  1067