BAC Information

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BAC

Clone NameB6Ng01-096L12
Chromosome4 (Build37)
Map Location 52,054,389 - 52,133,235
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666681, LOC100040814, LOC384015
Downstream geneLOC100041026, LOC100041038, LOC666724, Smc2, LOC100040883, 4930547C10Rik, LOC100040908, LOC666761, Olfr275, Olfr274-ps1, Olfr273, LOC230185, Olfr272, Olfr271-ps1, Olfr270, 1700054F22Rik, Nipsnap3a, Abca1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096L12.bB6Ng01-096L12.g
ACCDH907288DH907289
length1,18961
definitionDH907288|Mus musculus domesticus DNA, BAC clone: B6Ng01-096L12, 5' end.DH907289|Mus musculus domesticus DNA, BAC clone: B6Ng01-096L12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,132,025 - 52,133,235)(52,054,389 - 52,054,449)
sequence
gaattcatgggaagaggaaaggatattcctagacttgaccatgtgctgtg
ttgagatacaaaaccaaaccaaaagaaagtccaaaacagataaatgttcc
cctaagtagtgtagcaatgacatcaaaagagggtgaggacaatgtcctta
aaacccacaaggaggaatccaagaagactgaacttgtggggttaactgct
actaagcaccttagagcatgttcttctggtaaataaatatttgtttaaac
ggtctttgtcgtaaaactgaatatttattttgaaaagataagaatgaaga
acatttttaaccaggcactgctcttcagttaacttcaagatgtttcttac
ctattatcactgttatgagaggtaatgcttgtacctcacaacctttcctt
cctttctgttctgacagtgtgtttggctggaagatgattcttgagaaata
ttcctagtcttgcttgaaagctttgaaggaagcaaaagaagtttcaccct
gccagtgggtaaagtcctacttagggaatacggatgcaatgccatagcaa
ctactaagccttccttgtcactacaagcatgagttacttgtatctcctta
taacagacaacattctccagaatagagcacttaaactgaggtctggagag
acggctcagcagttaagagtgcttgctgatctttcagaggacccaagttt
atttctcagcacccatgtcaagaggctcaccattacctataactctagtt
ctggagtatctgataccctatctggtctacactggcatccactcacatgt
gtacatatatacatacacacttaaacacaaacaaataatagtgattttta
atgaaaagatttgaactacgtatatttgcttagattcgtgcatttaatca
catgattcatagaccattctttgctcccacaaccaatgtgtatatgaagg
aacttacagctttttctcaaatggaagagcattgacgaagtattggacct
gtgattgcaaggtaaatagaagcataccagaagaaaatgccagcaaaagc
agtagatcagacagcaaacaacactcagaacactgtaaggagactcggta
gaaatgaggacagcaaacaaactcagagctgaaaggtcaacacataaata
gcttgtaacctagacgagtttatttcatcctggaagctc
taaatggacccagcagattacatatatgtgggaggagggggaggtcttga
ggaaggttggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_52132025_52133235
seq2: B6Ng01-096L12.b_48_1236 (reverse)

seq1  GAGCTTTCTCCAGGATGAATATAAAACCTCTGTCTAGTTTACAAAGCTAT  50
      |||||   ||||||||||| |||||  ||| |||||| |||| |||||||
seq2  GAGCT---TCCAGGATGAA-ATAAA--CTC-GTCTAGGTTAC-AAGCTAT  42

seq1  TTATGTGTTGACCCTTTCAAGCTCTTGAGTTTGGTTTGCTGGTCCCTCAT  100
      ||||||||||| |||||| ||||| ||||||| ||||||||   ||||||
seq2  TTATGTGTTGA-CCTTTC-AGCTC-TGAGTTT-GTTTGCTG--TCCTCAT  86

seq1  TTCTAACGAGTCT-CTTACAGTGTTCTGAGTTGTTGTTTTGCTGTCTTGG  149
      ||||| ||||||| |||||||||||||||| ||||| ||||||||||  |
seq2  TTCTACCGAGTCTCCTTACAGTGTTCTGAG-TGTTG-TTTGCTGTCT--G  132

seq1  ATCTAACTTGCTTTTGCCTGGCATTTTCTTCTTGGTATGCTTCTATTTAC  199
      |||||   |||||||| |||||||||||||| ||||||||||||||||||
seq2  ATCTA--CTGCTTTTG-CTGGCATTTTCTTC-TGGTATGCTTCTATTTAC  178

seq1  CTTGCAATCACAGGTCCAATACTTCGTCAATGCTCTTCCATTTGAGAAAA  249
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTTGCAATCACAGGTCCAATACTTCGTCAATGCTCTTCCATTTGAG-AAA  227

seq1  AAGCTGTAAGTTCCTTCATATACACATTGGTTGTGGGAGCAAAGAATGGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTAAGTTCCTTCATATACACATTGGTTGTGGGAGCAAAGAATGGT  277

seq1  CTATGAATCATGTGATTAAATGCACGAATCTAAGCAAATATACGTAGTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAATCATGTGATTAAATGCACGAATCTAAGCAAATATACGTAGTTC  327

seq1  AAATCTTTTCATTAAAAATCACTATTATTTGTTTGTGTTTAAGTGTGTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTTCATTAAAAATCACTATTATTTGTTTGTGTTTAAGTGTGTAT  377

seq1  GTATATATGTACACATGTGAGTGGATGCCAGTGTAGACCAGATAGGGTAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATATGTACACATGTGAGTGGATGCCAGTGTAGACCAGATAGGGTAT  427

seq1  CAGATACTCCAGAACTAGAGTTATAGGTAATGGTGAGCCTCTTGACATGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACTCCAGAACTAGAGTTATAGGTAATGGTGAGCCTCTTGACATGG  477

seq1  GTGCTGAGAAATAAACTTGGGTCCTCTGAAAGATCAGCAAGCACTCTTAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGAGAAATAAACTTGGGTCCTCTGAAAGATCAGCAAGCACTCTTAA  527

seq1  CTGCTGAGCCGTCTCTCCAGACCTCAGTTTAAGTGCTCTATTCTGGAGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGAGCCGTCTCTCCAGACCTCAGTTTAAGTGCTCTATTCTGGAGAA  577

seq1  TGTTGTCTGTTATAAGGAGATACAAGTAACTCATGCTTGTAGTGACAAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTCTGTTATAAGGAGATACAAGTAACTCATGCTTGTAGTGACAAGG  627

seq1  AAGGCTTAGTAGTTGCTATGGCATTGCATCCGTATTCCCTAAGTAGGACT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTAGTAGTTGCTATGGCATTGCATCCGTATTCCCTAAGTAGGACT  677

seq1  TTACCCACTGGCAGGGTGAAACTTCTTTTGCTTCCTTCAAAGCTTTCAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCACTGGCAGGGTGAAACTTCTTTTGCTTCCTTCAAAGCTTTCAAG  727

seq1  CAAGACTAGGAATATTTCTCAAGAATCATCTTCCAGCCAAACACACTGTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACTAGGAATATTTCTCAAGAATCATCTTCCAGCCAAACACACTGTC  777

seq1  AGAACAGAAAGGAAGGAAAGGTTGTGAGGTACAAGCATTACCTCTCATAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGAAAGGAAGGAAAGGTTGTGAGGTACAAGCATTACCTCTCATAA  827

seq1  CAGTGATAATAGGTAAGAAACATCTTGAAGTTAACTGAAGAGCAGTGCCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATAATAGGTAAGAAACATCTTGAAGTTAACTGAAGAGCAGTGCCT  877

seq1  GGTTAAAAATGTTCTTCATTCTTATCTTTTCAAAATAAATATTCAGTTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAAAATGTTCTTCATTCTTATCTTTTCAAAATAAATATTCAGTTTT  927

seq1  ACGACAAAGACCGTTTAAACAAATATTTATTTACCAGAAGAACATGCTCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACAAAGACCGTTTAAACAAATATTTATTTACCAGAAGAACATGCTCT  977

seq1  AAGGTGCTTAGTAGCAGTTAACCCCACAAGTTCAGTCTTCTTGGATTCCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGCTTAGTAGCAGTTAACCCCACAAGTTCAGTCTTCTTGGATTCCT  1027

seq1  CCTTGTGGGTTTTAAGGACATTGTCCTCACCCTCTTTTGATGTCATTGCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGGGTTTTAAGGACATTGTCCTCACCCTCTTTTGATGTCATTGCT  1077

seq1  ACACTACTTAGGGGAACATTTATCTGTTTTGGACTTTCTTTTGGTTTGGT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTACTTAGGGGAACATTTATCTGTTTTGGACTTTCTTTTGGTTTGGT  1127

seq1  TTTGTATCTCAACACAGCACATGGTCAAGTCTAGGAATATCCTTTCCTCT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATCTCAACACAGCACATGGTCAAGTCTAGGAATATCCTTTCCTCT  1177

seq1  TCCCATGAATTC  1211
      ||||||||||||
seq2  TCCCATGAATTC  1189

seq1: chr4_52054389_52054449
seq2: B6Ng01-096L12.g_72_132

seq1  TAAATGGACCCAGCAGATTACATATATGTGGGAGGAGGGGGAGGTCTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGACCCAGCAGATTACATATATGTGGGAGGAGGGGGAGGTCTTGA  50

seq1  GGAAGGTTGGG  61
      |||||||||||
seq2  GGAAGGTTGGG  61