BAC Information

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BAC

Clone NameB6Ng01-096N17
Chromosome4 (Build37)
Map Location 146,506,070 - 146,765,025
singlet/doubletdoublet
Overlap geneOTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588
Upstream geneLOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570
Downstream geneLOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096N17.bB6Ng01-096N17.g
ACCDH907387DH907388
length1,1361,039
definitionDH907387|Mus musculus domesticus DNA, BAC clone: B6Ng01-096N17, 5' end.DH907388|Mus musculus domesticus DNA, BAC clone: B6Ng01-096N17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,763,878 - 146,765,025)(146,506,070 - 146,507,289)
sequence
gaattctctgatgaactctcagactgcctttgtcagtaaagcatttgtca
cattcattacatttgtaaggtttctctcctgtatgaattttctgatgctt
tctcagagtgcatttgtcagtaaagcatttgtcgcattcactacatttgt
aaggtttctctcctgaatgaattgtatgatgaatactaagatgggaaggt
tgggtaaagcatttgtcactttcactatatttgtaagatttctttcctgg
ataaattctctgctgactttgaagattgtcaccctgagtaaagcatttgt
caaattcaccacaagtgtaagtgttcatttcactattgttttgtctcaca
atgggtttatgtttagaaaccaaaacctcatcaagatttttatttctgtt
gtgttctttcttctctacgtgggttccttgattgagactaatgatagaag
acccctttaaacagtttacacagtctttatatgtgcaaacttgtttagtg
gtcccagttttaagtctttttaggtttgaggattggagagtggcatctct
gtggttagttttatgaggtgtactttcggaggattcatgaattacattgc
tagactcattacatttaaaagacttctcttggatatgcccatgctcattg
aaaatgtgctgtgtgtcttgttccacgaccttctccttctcatagtttcc
acatatgcagtgattttctgaaaaaaaggaagaattagggataacaggga
ttacttatatgaggagtaagtatgatccaataatcactgttctatgtatt
catactctcaagagaggtttttcctttttttaatcattgcatggatcctc
agaagtacctcaaatctgatctatatcaaatggcaaagtgataatagcct
tctagattgtaccacccacccatataaaaaaggttaacccagaattgctc
ctatctaaaggaaataaagagtgtccctttatctacagggacaagagtga
gcagaaactgaaggaaaggccattcagagactgccaaacctggcatccat
tcatcttgcacacaccaacactgatatattgctggatgccataagtgctt
gttcagaacctgatatagatcttctgagagttctgc
gaattccaggaagcttttgaattttgggcgggtccagaaggcggcgctag
gcagaaagaagggaagttcggcggtttcatctttcttcttgcatctcggc
tgcctcgtggtcaggaagtcatggagggagactagcgcctagtatttgcg
gtgcctgaaaacttccttaagctgcagttgttgtgctggcctcctaggac
attgagcagctggtcttgtcaccttccaggtcagaggagctgttggactg
gggaacgggcaggagctgggcagcggtgtggagcaggggtgcattttctg
ccgccactctcacaattctgttgtggataccttaccattgtcaggaagtt
tgagatcctgtgaattggtttcatggtgatgctctaatcaattttatggt
tgccagaatatttttctaaaatatcctcggagatccttggctgcatctgg
agtttgtatacccggaggtttgcctttgcaaaagcctttataaagctcct
gtaattcaaattcgttcatgctttcttaactcccctgttcctccatttgc
catttcatttccctttctccagggaactgagtaggcatcctgagagagct
ttgtaagcatttgtcatatagggaccagtgcagatttgattggattcgaa
aatatttgttataaagtatctttgaaagacccaaaacgggaggcctctcc
cacgttctgactcaggagaggcgacactccaaatcacttgcaagaaaggg
tcttgatgcaaattgcaagaggacttttatttcaagagagctctcaggtc
catattcatacaccatgcagggctagcggactgtggtgtgcagagtagct
gggtaaggggtatttaaagggaagaaaccataagttcaagcgggtgggga
gggcgttgttggaaataccaaagtaccagttagtgcaagtcagacagttg
tctatgagtctcagtaacatagcacatttgcacagggagttcctgggagt
ggtcaaggtggatcaaggtgacttccttgccagatattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146763878_146765025
seq2: B6Ng01-096N17.b_48_1183 (reverse)

seq1  GCAGAAACTCTCAGGAGAAACTATATCAGGTTCCTGAAAACAAGCACTTT  50
      |||| ||||||||| || | |||||||||||| |||  ||||||||| ||
seq2  GCAG-AACTCTCAGAAG-ATCTATATCAGGTT-CTG--AACAAGCAC-TT  44

seq1  ATGGCAT-CAGCAATAATATCAGTGTTTGGTGTGTGC-AGATGGAATGGA  98
      ||||||| ||||||| ||||||||| ||||||||||| |||| |||||||
seq2  ATGGCATCCAGCAAT-ATATCAGTG-TTGGTGTGTGCAAGAT-GAATGGA  91

seq1  TGCCCAGGTTTGGCAGTCTCTGGATGGACTTTCCTTCAGTTTCTGCTCCA  148
      || ||||||||||||||||||| |||| ||||||||||||||||||| ||
seq2  TG-CCAGGTTTGGCAGTCTCTGAATGGCCTTTCCTTCAGTTTCTGCT-CA  139

seq1  CTCTTTGTCCCTGTAGATAAAGGGACACTCTTTATTTCCTTTAGATAGGA  198
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTC-TTGTCCCTGTAGATAAAGGGACACTCTTTATTTCCTTTAGATAGGA  188

seq1  GCAATTCTGGGTTAACCTTTTTTATATGGGTTGGTGGTACAATCTTAGAA  248
      ||||||||||||||||||||||||||||||| |||||||||||| |||||
seq2  GCAATTCTGGGTTAACCTTTTTTATATGGGTGGGTGGTACAATC-TAGAA  237

seq1  GGCTATTATCACTTTTGCCATTTGATATAGATCAGATTTGAGGTACTTCT  298
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGCTATTATCAC-TTTGCCATTTGATATAGATCAGATTTGAGGTACTTCT  286

seq1  GAGGATCCATGCAATGATTAAAAAAAGGAAAAACCTCTCTTGAGAGTATG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATCCATGCAATGATTAAAAAAAGGAAAAACCTCTCTTGAGAGTATG  336

seq1  AATACATAGAACAGTGATTATTGGATCATACTTACTCCTCATATAAGTAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATAGAACAGTGATTATTGGATCATACTTACTCCTCATATAAGTAA  386

seq1  TCCCTGTTATCCCTAATTCCCCCTTTTTTTCAGAAAATCACTGCATATGT  448
      |||||||||||||||||||  |||||||||||||||||||||||||||||
seq2  TCCCTGTTATCCCTAATTCTTCCTTTTTTTCAGAAAATCACTGCATATGT  436

seq1  GGAAACTATGAGAAGGAGAAGGTCGTGGAACAAGACACACAGCACATTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTATGAGAAGGAGAAGGTCGTGGAACAAGACACACAGCACATTTT  486

seq1  CAATGAGCATGGGCATATCCAAGAGAAGTCTTTTAAATGTAATGAGTCTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAGCATGGGCATATCCAAGAGAAGTCTTTTAAATGTAATGAGTCTA  536

seq1  GCAATATAATTCATGAATCCTCCGAAAGTACACCTCATAAAACTAACCAC  598
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTAATTCATGAATCCTCCGAAAGTACACCTCATAAAACTAACCAC  586

seq1  AGAGATGCCACTCTCCAATCCTCAAACCTAAAAAGACATAAAACTGGGAC  648
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGAGATGCCACTCTCCAATCCTCAAACCTAAAAAGACTTAAAACTGGGAC  636

seq1  CACTAAACAAGTTTGCACATATAAAGACTGTGTAAACTGTTTAAAGGGGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAACAAGTTTGCACATATAAAGACTGTGTAAACTGTTTAAAGGGGT  686

seq1  CTTCTATCATTAGTCTCAATCAAGGAACCCACGTAGAGAAGAAAGAACAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATCATTAGTCTCAATCAAGGAACCCACGTAGAGAAGAAAGAACAC  736

seq1  AACAGAAATAAAAATCTTGATGAGGTTTTGGTTTCTAAACATAAACCCAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAATAAAAATCTTGATGAGGTTTTGGTTTCTAAACATAAACCCAT  786

seq1  TGTGAGACAAAACAATAGTGAGATGAACACTTACACTTGTGGTGAATTTG  848
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGTGAGACAAAACAATAGTGAAATGAACACTTACACTTGTGGTGAATTTG  836

seq1  ACAAATGCTTTACTCAGAGTGACAATCTTCAAAGTCAGCAGAGAATTTAT  898
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACAAATGCTTTACTCAGGGTGACAATCTTCAAAGTCAGCAGAGAATTTAT  886

seq1  CCAGGAAAGAAATCTTACAAATATAGTGAAAGTGACAAATGCTTTACCCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAAGAAATCTTACAAATATAGTGAAAGTGACAAATGCTTTACCCA  936

seq1  ACCTTCCCATCTTAGTATTCATCATACAATTCATTCAGGAGAGAAACCTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCCCATCTTAGTATTCATCATACAATTCATTCAGGAGAGAAACCTT  986

seq1  ACAAATGTAGTGAATGCGACAAATGCTTTACTGACAAATGCACTCTGAGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGTAGTGAATGCGACAAATGCTTTACTGACAAATGCACTCTGAGA  1036

seq1  AAGCATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGTAATGAATG  1098
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCAGAAAATTCATACAGGAGAGAAACCTTACAAATGTAATGAATG  1086

seq1  TGACAAATGCTTTACTGACAAAGGCAGTCTGAGAGTTCATCAGAGAATTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAATGCTTTACTGACAAAGGCAGTCTGAGAGTTCATCAGAGAATTC  1136

seq1: chr4_146506070_146507289
seq2: B6Ng01-096N17.g_68_1106

seq1  GAATTCCAGGAAGCTGTTGAATTTTGGGCGGGTCCAGAAGGCGGCGCTAG  50
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAAGCTTTTGAATTTTGGGCGGGTCCAGAAGGCGGCGCTAG  50

seq1  GCAGAAAGAAGGGAAGTTCCGCGGTTTCATCTTTCTTCTTGCATCTCGGC  100
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCAGAAAGAAGGGAAGTTCGGCGGTTTCATCTTTCTTCTTGCATCTCGGC  100

seq1  TGCCTCGTGATCAGGAAGTCATGGAGGGAGACTAGTGCCTAGTATTTGCG  150
      ||||||||| ||||||||||||||||||||||||| ||||||||||||||
seq2  TGCCTCGTGGTCAGGAAGTCATGGAGGGAGACTAGCGCCTAGTATTTGCG  150

seq1  GTGCCTGAAAACTTTCTTAAGAAGCAGTTGTTTTGCTGGCCTCCTAGGAC  200
      |||||||||||||| ||||||  ||||||||| ||||||           
seq2  GTGCCTGAAAACTTCCTTAAGCTGCAGTTGTTGTGCTGG-----------  189

seq1  ATCCAGGAGCTGGTCCTGTCATCTTCCAGGTTAGAGGAGCTGTTGGACTA  250
                                                        
seq2  --------------------------------------------------  189

seq1  GGAACCCGGCAGGAGCTGGGCAGCGGTGTGGAGCAGGGGTGCCTTTTCTG  300
                                                        
seq2  --------------------------------------------------  189

seq1  CCGCCATTCTCACAATTCAGTATTTGCGGAACCTGAAAACTTCCTTAAGC  350
                                                        
seq2  --------------------------------------------------  189

seq1  TGCCGTTGCTCCTCCTAGGACATTCAGCAGCTGATCCTGTCACCTTCTAG  400
                |||||||||||||| |||||||| || |||||||||| ||
seq2  ----------CCTCCTAGGACATTGAGCAGCTGGTCTTGTCACCTTCCAG  229

seq1  GTCAGAGGAGCTGTTGGACTGGGAAATGGGCAGGAGCTGGGCAGGTGTGT  450
      ||||||||||||||||||||||| || |||||||||||||||||  ||||
seq2  GTCAGAGGAGCTGTTGGACTGGGGAACGGGCAGGAGCTGGGCAGCGGTGT  279

seq1  GGAGCAGGGGTACATTTTCTGCCGCCATTCTCACAATTCTGTTGTGGATA  500
      ||||||||||| ||||||||||||||| ||||||||||||||||||||||
seq2  GGAGCAGGGGTGCATTTTCTGCCGCCACTCTCACAATTCTGTTGTGGATA  329

seq1  TCTTACCATTATCAGGAAGTTTGAGATCCTGTGAATTGGGTTCATGGTGA  550
       ||||||||| |||||||||||||||||||||||||||| ||||||||||
seq2  CCTTACCATTGTCAGGAAGTTTGAGATCCTGTGAATTGGTTTCATGGTGA  379

seq1  TGCTTTAATCAATTTTATGGTTGCCAGAATATTTTTCTAAAATATCCTCG  600
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTAATCAATTTTATGGTTGCCAGAATATTTTTCTAAAATATCCTCG  429

seq1  GAGAACCTTGGCTGCATCTGGAGTTTGTATACCGGGAGGTTTGCCTTTGC  650
      |||| |||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAGATCCTTGGCTGCATCTGGAGTTTGTATACCCGGAGGTTTGCCTTTGC  479

seq1  AAAAGCCTTCATAAAGCTCCTTTAATTCAAATTCGTTCATTCTTTCTTAA  700
      ||||||||| ||||||||||| |||||||||||||||||| |||||||||
seq2  AAAAGCCTTTATAAAGCTCCTGTAATTCAAATTCGTTCATGCTTTCTTAA  529

seq1  CTCCCCTGTTCCTCCATTTGCCATTTCATTTCCCTTTCTCCAGGGAACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTGTTCCTCCATTTGCCATTTCATTTCCCTTTCTCCAGGGAACTG  579

seq1  AGTAGGCATTCTGAGAGAGCTTTGTAAGCATTTGTCATATAGGGACCAGT  800
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGCATCCTGAGAGAGCTTTGTAAGCATTTGTCATATAGGGACCAGT  629

seq1  GCAGATTTGATTGAATTCGAAAATATTCGTTATAAAGTATCTTTGAAAGA  850
      ||||||||||||| ||||||||||||| ||||||||||||||||||||||
seq2  GCAGATTTGATTGGATTCGAAAATATTTGTTATAAAGTATCTTTGAAAGA  679

seq1  CCCAAAACGTGAGGACTCTCCCACGTTCTGACTCAGGAGAGGCGACATTC  900
      ||||||||| |||| |||||||||||||||||||||||||||||||| ||
seq2  CCCAAAACGGGAGGCCTCTCCCACGTTCTGACTCAGGAGAGGCGACACTC  729

seq1  CAGATCACTTGCAAGAAAGGGTCTTGATGCAAATTGTAAGAGGACTTTTA  950
      || ||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CAAATCACTTGCAAGAAAGGGTCTTGATGCAAATTGCAAGAGGACTTTTA  779

seq1  TTTCAAGAGAGCTCTCAGGTCCACATTCATACACCATGCAGGGCTAGAGG  1000
      ||||||||||||||||||||||| ||||||||||||||||||||||| ||
seq2  TTTCAAGAGAGCTCTCAGGTCCATATTCATACACCATGCAGGGCTAGCGG  829

seq1  ACTGTGGTGTGCAGAGTAGCTGGGTAAGGGGGTATTTAAA-GGAAGAAAC  1049
      ||||||||||||||||||||||||||| |||||||||||| |||||||||
seq2  ACTGTGGTGTGCAGAGTAGCTGGGTAA-GGGGTATTTAAAGGGAAGAAAC  878

seq1  CATAAG-TCAAGGGGATGGGGAGGGCGTTGTTGGAAAATACCAAAAGTAC  1098
      |||||| ||||| || |||||||||||||||||| ||||||| |||||||
seq2  CATAAGTTCAAGCGGGTGGGGAGGGCGTTGTTGG-AAATACC-AAAGTAC  926

seq1  AAGTTAAGTGGAAAGTCAAGACAGATGTCTATGAGTCTCAGTAACAATAG  1148
       |||| ||| | ||||| |||||| |||||||||||||||||||||    
seq2  CAGTT-AGT-GCAAGTC-AGACAGTTGTCTATGAGTCTCAGTAACA----  969

seq1  CAAGCACATTTGCACAGTGAGTTCCT-GGAGTGGTCAGGGTGGGTCAAGG  1197
        ||||||||||||||| |||||||| |||||||||| ||||| ||||||
seq2  -TAGCACATTTGCACAGGGAGTTCCTGGGAGTGGTCAAGGTGGATCAAGG  1018

seq1  TGACTTTCTTTGCCAGAATATTT  1220
      |||| ||| ||||||| ||||||
seq2  TGAC-TTCCTTGCCAG-ATATTT  1039