BAC Information

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BAC

Clone NameB6Ng01-096P01
Chromosome4 (Build37)
Map Location 78,056,328 - 78,057,453
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039974, LOC100039996
Downstream geneLOC100040026, LOC100040036, LOC667922
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096P01.bB6Ng01-096P01.g
ACCDH907444DH907445
length1,1551,119
definitionDH907444|Mus musculus domesticus DNA, BAC clone: B6Ng01-096P01, 5' end.DH907445|Mus musculus domesticus DNA, BAC clone: B6Ng01-096P01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatgtctaagatcaaatattcaggtgacagc
agatgctggtgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatccgtctggcggttcctca
gaaaattggacatagtactaacggaggacccagcaatacctctcctgggc
ataaatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atagatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccttatccagggatccacctcataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggattacagggctccca
atggaggagctagagaaagtacccaaggagctaaagggatctgcacctat
aggtggatcacattatgaactacagtacccggagctctgactctagctgc
atatgtatccaaagatggctagtcggcatcactggaagagaggccatgga
ccacaactttaatgcccagaaacagggaacgccaggccaaaatgtattgc
tcgac
gaattcacagcattttactctgtgtgaagaaataacaatcaaacaagcaa
ataaaacaccataatgtgaatgggaaataacttagtagttatcttctaat
tgatagcctctgaagaagatggctgtagacaaatctacaaatggctttag
gctacagagtaagtaatttaagttggctataaagaacattaccctagggg
agcaatagttattaaatactgaaatgagtttcctaaaatgtcattgtgaa
gcagagcagaaattgtcattaaatattgctaggaaatattcaaacatatt
cactgaaaaacagttatgcctaaagtaaaatgacaaacagagaaaaagaa
agagagtatgcatgcacactggcgaatacagaacagcaaagcacacgagt
gttaggaatctgtaccatgtgttctaatattcaggctgtgttcctggaaa
gaaaaatgaaaaatgaactatacaataaacatccactggaatcatttaat
gttgtttagggtttttttttaggttttattgtcacatctaaaatatcact
cattttaatatcattcattgattttgagaatgtactggttagttttatat
caacttgacacaagttagagtcatcagtgataagggagcacagttgtaaa
aatgtctccataagatttggttgtaggcaagcataaaggacaacttctta
tttattgattaatacggagggcccagcatatagttgttggtggcatcctt
tggtctggttatcctgttctctataaggaaacaagctgaggaatctatga
agagcaaaccagtaagccgtccttctcaatggcctctgtatcagctcctg
cctccagattcctgtattgcttgaattcttatattgacttctttgatgat
gaaacatgatgtagaatagaagcataactaataaaccccatctgccccaa
gttgcttctattatgctattttcatcatagtaatagtaaccctttacaca
gagactgataaatttaatttactatgaagtattaataaaggctgtggtgt
ttctctttaattttttgcatatgtatgcctcttgccatgaacttgtttaa
aggtttcaaaatccacgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_78056328_78057453
seq2: B6Ng01-096P01.g_66_1184

seq1  GAATTCACAGCATTTTACTCTGTGTGAAGAAATAACAATCAAACAAGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGCATTTTACTCTGTGTGAAGAAATAACAATCAAACAAGCAA  50

seq1  ATAAAACACCATAATGTGAATGGGAAATAACTTAGTAGTTATCTTCTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACACCATAATGTGAATGGGAAATAACTTAGTAGTTATCTTCTAAT  100

seq1  TGATAGCCTCTGAAGAAGATGGCTGTAGACAAATCTACAAATGGCTTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGCCTCTGAAGAAGATGGCTGTAGACAAATCTACAAATGGCTTTAG  150

seq1  GCTACAGAGTAAGTAATTTAAGTTGGCTATAAAGAACATTACCCTAGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGAGTAAGTAATTTAAGTTGGCTATAAAGAACATTACCCTAGGGG  200

seq1  AGCAATAGTTATTAAATACTGAAATGAGTTTCCTAAAATGTCATTGTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATAGTTATTAAATACTGAAATGAGTTTCCTAAAATGTCATTGTGAA  250

seq1  GCAGAGCAGAAATTGTCATTAAATATTGCTAGGAAATATTCAAACATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCAGAAATTGTCATTAAATATTGCTAGGAAATATTCAAACATATT  300

seq1  CACTGAAAAACAGTTATGCCTAAAGTAAAATGACAAACAGAGAAAAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAAAACAGTTATGCCTAAAGTAAAATGACAAACAGAGAAAAAGAA  350

seq1  AGAGAGTATGCATGCACACTGGCGAATACAGAACAGCAAAGCACACGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTATGCATGCACACTGGCGAATACAGAACAGCAAAGCACACGAGT  400

seq1  GTTAGGAATCTGTACCATGTGTTCTAATATTCAGGCTGTGTTCCTGGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGAATCTGTACCATGTGTTCTAATATTCAGGCTGTGTTCCTGGAAA  450

seq1  GAAAAATGAAAAATGAACTATACAATAAACATCCACTGGAATCATTTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATGAAAAATGAACTATACAATAAACATCCACTGGAATCATTTAAT  500

seq1  GTTGTTTAGGGTTTTTTTTTAGGTTTTATTGTCACATCTAAAATATCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTAGGGTTTTTTTTTAGGTTTTATTGTCACATCTAAAATATCACT  550

seq1  CATTTTAATATCATTCATTGATTTTGAGAATGTACTGGTTAGTTTTATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAATATCATTCATTGATTTTGAGAATGTACTGGTTAGTTTTATAT  600

seq1  CAACTTGACACAAGTTAGAGTCATCAGTGATAAGGGAGCACAGTTGTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGACACAAGTTAGAGTCATCAGTGATAAGGGAGCACAGTTGTAAA  650

seq1  AATGTCTCCATAAGATTTGGTTGTAGGCAAGCATAAAGGACAACTTCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTCCATAAGATTTGGTTGTAGGCAAGCATAAAGGACAACTTCTTA  700

seq1  TTTATTGATTAATACGGAGGGCCCAGCATATAGTTGTTGGTGGCATCC-T  749
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTTATTGATTAATACGGAGGGCCCAGCATATAGTTGTTGGTGGCATCCTT  750

seq1  TGGTCTGGTTATCCTGTTCTCTATAAGGAAACAAGCTGAGGAATCTATGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGGTTATCCTGTTCTCTATAAGGAAACAAGCTGAGGAATCTATGA  800

seq1  AGAGCAAACCAGTAAGCCGTCCTTCTCAATGGCCTCTGTATCAGCTCCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAAACCAGTAAGCCGTCCTTCTCAATGGCCTCTGTATCAGCTCCTG  850

seq1  CCTCCAGATTCCTGTATTGCTTGAATTCTTATATTGACTTCTTTGATGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGATTCCTGTATTGCTTGAATTCTTATATTGACTTCTTTGATGAT  900

seq1  GAAACATGATGTAGAATAGAAGCATAAACTAAATAAACCCCATCTGCCCC  949
      ||||||||||||||||||||||||| |||| ||||||||||||||| |||
seq2  GAAACATGATGTAGAATAGAAGCAT-AACT-AATAAACCCCATCTG-CCC  947

seq1  CAAGTTGCTTCTATTATGCTA-TTTCATCATAGTAATAGTAACCCTTACA  998
      ||||||||||||||||||||| |||||||||||||||||||||||||   
seq2  CAAGTTGCTTCTATTATGCTATTTTCATCATAGTAATAGTAACCCTTTAC  997

seq1  ACAGAGACTGATAAATTTAATTTACTATGAAGTATAAATAAAAGCTGTGG  1048
      ||||||||||||||||||||||||||||||||||| |||||| |||||||
seq2  ACAGAGACTGATAAATTTAATTTACTATGAAGTATTAATAAAGGCTGTGG  1047

seq1  TTGTTTCTTCTTTTATATTTTTGGCATAATGTATTGCCCTCTTGCCTTGA  1098
       |||||| |||||   |||||| |||| ||||||   ||||||||| |||
seq2  -TGTTTC-TCTTT--AATTTTTTGCAT-ATGTAT--GCCTCTTGCCATGA  1090

seq1  ACTTG-TTAAAGGTTTCAAAATCCACGAT  1126
      ||||| |||||||||||||||||||||||
seq2  ACTTGTTTAAAGGTTTCAAAATCCACGAT  1119