BAC Information

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BAC

Clone NameB6Ng01-097A13
Chromosome10 (Build37)4 (Build37)
Map Location 30,231,931 - 30,232,46436,021,699 - 36,022,462
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneRspo3, EG630389, Rpl12, LOC623064, LOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik, LOC212815
Downstream geneTrmt11, Hint3, Ncoa7, LOC382354, Hey2, LOC654431, EG432448, Hddc2, Tpd52l1, LOC100041294, Ibrdc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097A13.bB6Ng01-097A13.g
ACCDH907514DH907515
length1,000470
definitionDH907514|Mus musculus domesticus DNA, BAC clone: B6Ng01-097A13, 5' end.DH907515|Mus musculus domesticus DNA, BAC clone: B6Ng01-097A13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(30,231,931 - 30,232,464)(36,021,699 - 36,022,462)
sequence
gaattctagttgaattcttacttttgtttaccaaattggctggaggttat
aacatttttagtagaactcttgtaaatccacagaccttggatttacaaag
gctatggattattttcagtaatactattacagaaatgccaaaagagtgtg
tgggggcactgacatagtgtgaatggttgattttcccatgtgttggtgga
atagtagaagatttttgagatcttttcaggttaattcaatgcagacccac
ttctaacaatataatccagcatcctgaacagtgagggagaaatggcctta
ctttctgttttgttcttggaagttagagtgaactcccacaaaagttgcag
agaagaatcaggattagaagttccactgaagaatacagaaagtcaaaact
ggaggaagtgtctgaccctaggactcaggtgagatcaccattttctatcc
cacgactctctaaggcgggtccactcaggagtacacagaccacagacgtg
acagagcatctgggaagggtcctatgggcctacatctgcacccaggaggt
ggggctgttccacagccctctgtgcactggtcttgccaggagggagctgg
tctcccaggagtgctgacacaggtttacaaactcacaggaggaacacgct
ccagctagagacagcaagaacatctgacaccagagattaccagatggtga
aaggcaaatgcaagaatcttatcaacagagaccaagactacttggcatca
tcagaacccaatactcccaccacagcgagtcctggataccccaacataca
ggaaaagcaagatttggatttaaaatcatatcttattatgctggtagaga
attttaagaaggacattaataactcacccccccccaaaaaaaaactccct
taaaaaaatacaggagaatgcggctaaacaggagaagcccttaaagtgga
aacacaaaatccctagagattataggagaacataggtaaccgatgaaaat

tttgtttagctctgtaccctgtatttaatatggataattgattctctaga
gtctaacttcttgagttctttgtatatattggttaatagccctctattag
atgtaggattggtaaaggtgttttcccaatctgtgggttgcggttttgtc
ctattgacagtgtcctttgccttacagaagctttgcaattttatgaggtc
ccatttgtcaattgttgatcttagaacacaaggcattggtgttctattca
ggaaaatttcccctgtgcccatgtgttcaatgctcttcccacttcctttt
ctatttgtttcagtgtctctgtttttatatggcggtccttgatccactta
gaattgggctttatacaaggagataaaaatggatcaatttgcatttgtct
acttgattgccagttgaaccaacaccttttgttgaaaatgcttttttcca
ctggatagttttagctcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_30231931_30232464
seq2: B6Ng01-097A13.b_46_579 (reverse)

seq1  TGTAGGCCCATAGGACCCTTCCCAGATGCTCTGTCACGTCTGTGGTCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGCCCATAGGACCCTTCCCAGATGCTCTGTCACGTCTGTGGTCTGT  50

seq1  GTACTCCTGAGTGGACCCGCCTTAGAGAGTCGTGGGATAGAAAATGGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCCTGAGTGGACCCGCCTTAGAGAGTCGTGGGATAGAAAATGGTGA  100

seq1  TCTCACCTGAGTCCTAGGGTCAGACACTTCCTCCAGTTTTGACTTTCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACCTGAGTCCTAGGGTCAGACACTTCCTCCAGTTTTGACTTTCTGT  150

seq1  ATTCTTCAGTGGAACTTCTAATCCTGATTCTTCTCTGCAACTTTTGTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCAGTGGAACTTCTAATCCTGATTCTTCTCTGCAACTTTTGTGGG  200

seq1  AGTTCACTCTAACTTCCAAGAACAAAACAGAAAGTAAGGCCATTTCTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCACTCTAACTTCCAAGAACAAAACAGAAAGTAAGGCCATTTCTCCC  250

seq1  TCACTGTTCAGGATGCTGGATTATATTGTTAGAAGTGGGTCTGCATTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTTCAGGATGCTGGATTATATTGTTAGAAGTGGGTCTGCATTGAA  300

seq1  TTAACCTGAAAAGATCTCAAAAATCTTCTACTATTCCACCAACACATGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCTGAAAAGATCTCAAAAATCTTCTACTATTCCACCAACACATGGG  350

seq1  AAAATCAACCATTCACACTATGTCAGTGCCCCCACACACTCTTTTGGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAACCATTCACACTATGTCAGTGCCCCCACACACTCTTTTGGCAT  400

seq1  TTCTGTAATAGTATTACTGAAAATAATCCATAGCCTTTGTAAATCCAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAATAGTATTACTGAAAATAATCCATAGCCTTTGTAAATCCAAGG  450

seq1  TCTGTGGATTTACAAGAGTTCTACTAAAAATGTTATAACCTCCAGCCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGATTTACAAGAGTTCTACTAAAAATGTTATAACCTCCAGCCAAT  500

seq1  TTGGTAAACAAAAGTAAGAATTCAACTAGAATTC  534
      ||||||||||||||||||||||||||||||||||
seq2  TTGGTAAACAAAAGTAAGAATTCAACTAGAATTC  534

seq1: chr4_36021699_36022462
seq2: B6Ng01-097A13.g_237_542 (reverse)

seq1  AAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACATTATGAACT  50
                                                        
seq2  --------------------------------------------------  0

seq1  AACCAGTATCCCTGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATG  100
                                                        
seq2  --------------------------------------------------  0

seq1  GCCTAGTTGGCCATCACTGGAAAGAGAGGCCCATTGGACTTGCAAACTTT  150
                                                        
seq2  --------------------------------------------------  0

seq1  ATATGCCTCAGTACAGGGGAATGCCAGGGCCAAAAAGTGGGAGTGGGTAG  200
                                                        
seq2  --------------------------------------------------  0

seq1  GTAGAGGAGTGGGGGGGGGAGGGTATGGGGGACTTTTGGGATAGCATTGG  250
                                                        
seq2  --------------------------------------------------  0

seq1  AAATGTAAATGAGGAAAATACCTAATATATATATATATATATATATATAT  300
                                                        
seq2  --------------------------------------------------  0

seq1  ATATATATATATATATATATATATATATGTAAAGAAAGGTCTAAACACAC  350
                                                        
seq2  --------------------------------------------------  0

seq1  ACACACACACATGGTGGTATTGGTACAGATACATACAGGTAAATCACTGG  400
                                                        
seq2  --------------------------------------------------  0

seq1  AATGAAATTGAAAGCCCCAAAATAAATGCACATACCTATAGTCATTTGTC  450
                                             ||      |  
seq2  --------------------------------------AAG------GAG  6

seq1  CTTTGACAAAAATGTCAAAGGAGTGGAAAAAGACAGCATTTTCAACAAAT  500
      ||     |||| | ||     ||||||||||   ||||||||||||||| 
seq2  CT-----AAAACTATC----CAGTGGAAAAA---AGCATTTTCAACAAAA  44

seq1  GGTGCTAGTGCAACTCATGGTCTGCATGTGGAAGAATGCAAATTGATCCA  550
      |||| | || ||||   |||    || || ||  ||||||||||||||||
seq2  GGTGTTGGTTCAAC---TGGCAATCAAGTAGACAAATGCAAATTGATCCA  91

seq1  TTTTTATCTTCTTGTACAAAGCTCAAGTCTCAGTGGATCAAGGACCTCCA  600
      ||||||||| |||||| ||||| ||| ||| ||||||||||||||| |||
seq2  TTTTTATCTCCTTGTATAAAGCCCAATTCTAAGTGGATCAAGGACCGCCA  141

seq1  CATAAAACCAACTATGCTGAATCTAATAGAGGAAAAAGTGGGAAACAGCT  650
       |||||| ||   |  ||||| | ||||||  |  ||||||| || ||| 
seq2  TATAAAAACAGAGACACTGAAACAAATAGAAAAGGAAGTGGG-AAGAGCA  190

seq1  TCAAATATACCAGCACAAAAGAAAATTTCCTAAACAGA--AACAATGGCT  698
      |  || | |   |||||   |||| |||||| || |||  | ||||| ||
seq2  TTGAACACATGGGCACAGGGGAAATTTTCCTGAATAGAACACCAATGCCT  240

seq1  CAGGGTCTGAGATCAACCATTGACAAATGGGACCTCATAAAATTGAAAAG  748
         | ||| |||||||| ||||||||||||||||||||||||||| ||||
seq2  TGTGTTCTAAGATCAACAATTGACAAATGGGACCTCATAAAATTGCAAAG  290

seq1  CTTCTATAAGGCAAAG  764
      ||||| ||||||||||
seq2  CTTCTGTAAGGCAAAG  306