BAC Information

Click to search

BAC

Clone NameB6Ng01-097F20
Chromosome4 (Build37)
Map Location 146,766,444 - 146,890,475
singlet/doubletdoublet
Overlap geneLOC627701, OTTMUSG00000010671
Upstream geneRex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588
Downstream geneLOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097F20.bB6Ng01-097F20.g
ACCDH907761DH907762
length1,0461,204
definitionDH907761|Mus musculus domesticus DNA, BAC clone: B6Ng01-097F20, 5' end.DH907762|Mus musculus domesticus DNA, BAC clone: B6Ng01-097F20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,766,444 - 146,767,501)(146,889,269 - 146,890,475)
sequence
gaattcttccaaaagggaaacttttcaaaaaaaagacggtttgaatcctt
tattttggcctatctcttagaatgaaatagataatttatacagtcaagaa
tcttaacaaatataatatatgctgaaatatctttgacttcatttcagtgc
agaaaaaatatgtaaaaaaatttttttatgggaaaaatagttctcctggg
gaaatgtggcatatgttttacacgggtaatattcttttcaacagtcagtg
ctctaaactagagaattattatgaatctgaaaacttttgaaaaccttcat
gcaatgttcaaatcttagataatgtcaactattatgctggcagtaactct
gaatatatgatagtgaagaaacattttcattaaacttttacttgttcacc
ctcaaatattatatgatgaagtcaggtgtgaaagccagaagaatatgatg
ttgtgcaacaattcatggagatagaaatgatccattccaaaaggaaacta
aataaagagtgtactatcgccttcaaaatgtctaataaaactggcagcat
tttgtatatttaattcaaatgaggaaattgacacagattgtacttgatag
tgtatttgacaaactgagccaccaagactgcatgttcttaatcctataat
atgcctacagatgtgaagtgtcctttgagtatccagtattcattattctt
atcacgtcaatgtgacaaatgatttattggtttcacatttcaggatagtg
actgactatgattcccttatgctctgtcaacatctccttcctcattgccc
tgtaaataaagctgaatattttaacaaggttgacttggctgtttcagttt
gcacttataattagatgaataaatgttgcatcatcgctggaactatttct
cataaagtatttgctgaagtcatgaatatttctgtaacctgtaacttaac
ttaatatttgttgatttcaactgtcataacaactttgaccacatacgata
taggattgtatatagtgtttgcattagaaattagcaacgtgtatta
gaattctaattatttttagcagggcaaactaccctgcagttcaatgaatg
atttcgcagttttaagacaattggaaatatgtgtttccctgtacttttaa
gcaataactgtgacagggtcgttacatcccaaagggattgttatccacca
gttgaaaatcactactattaactttatgatacaggtttgcaaaaatttca
tgacttctgcatatgttttatgtgaggcatttcctgggaagatgcaacat
atattcatctgagtatcccaagggcaagttgaaaacaaccaaagcaacct
tgtagaatctttcagctttattggagttagttacaggacaataggaaagg
agttgttgagcagatcacaagagactcggagtcacttgttatcctataat
gtgaaacaagtatttgagaagaattatgattactggatactcgaagcaca
cttcacatctgcaagcatatttatagaataaagaatatgctgtctgggta
gctcagtttgccagataatcttttaagtatatttttatcttaattggttc
attttaattaaatatacagaatgttaccagttttattagatattttgagg
attgtattaaagaccttaaatagtttccttttgaaatggattatttctgt
cttaaagaaagtgttacacaatactatcttctgacttcccagcttgtctt
catcttgccacattttgagggtgaacaaatagaaaggtgtcatgaaaagc
tttctacaactgggcgtggtggcacatgtctttatccaagcactcgggag
agagaggcaggcggattactgagttcgaggccagcctggtctacaggatg
gccatggatatacagagaaaccctgtctctaaaaccaacccccccctaaa
aaagaaagaacgaagaagaagaaagaaagaagaaagaagaacgcttgcta
cattttttcaaattgtcagagtcgacattatttaagatttggaacattgc
atgaaaatttttcaaaagattctcataattatactaaattcctctagtgt
ggagcttgagtattggcaagaaaattgccatgaataaaacatatgccact
ttttttctacaggaaatctgccgttaaaagttcttgaagtgtttctctga
acataatgattcaaagaatttctctctaacatactcatgcgttaaagttt
ctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146766444_146767501
seq2: B6Ng01-097F20.b_45_1090

seq1  GAATTCTTCCAAAAGGGAAACTTTTCAAATACATTGATGGTTTGAATCCT  50
      ||||||||||||||||||||||||||||| | |  || ||||||||||||
seq2  GAATTCTTCCAAAAGGGAAACTTTTCAAA-AAAAAGACGGTTTGAATCCT  49

seq1  TTATTTTGGCCTATCTCTTAGAATGTAACAGATAATTTATACAGGCAAGA  100
      ||||||||||||||||||||||||| || ||||||||||||||| |||||
seq2  TTATTTTGGCCTATCTCTTAGAATGAAATAGATAATTTATACAGTCAAGA  99

seq1  ATCTTAACAAATATAATATATGCTGAAATATCTTTGACTTCATTTCAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAACAAATATAATATATGCTGAAATATCTTTGACTTCATTTCAGTG  149

seq1  CAGAAAAAATATGT-AAAATATTTTTTTATGGGAAAAAAAGTTCTCCTGG  199
      |||||||||||||| |||| |||||||||||||||||| |||||||||||
seq2  CAGAAAAAATATGTAAAAAAATTTTTTTATGGGAAAAATAGTTCTCCTGG  199

seq1  GGAAATGTGGCATATGTTTTACACGGGTAATATTCTTTTCAACAGTTAGT  249
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGAAATGTGGCATATGTTTTACACGGGTAATATTCTTTTCAACAGTCAGT  249

seq1  GCTCTAAACTAGAGA---ATTATGAATCTGAAAACTTTTGAAAACCTTCA  296
      |||||||||||||||   ||||||||||||||||||||||||||||||||
seq2  GCTCTAAACTAGAGAATTATTATGAATCTGAAAACTTTTGAAAACCTTCA  299

seq1  TGCAATGTTCAAATCTTAGATAATGTCAACTATTATGCTGGCAGTAACTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGTTCAAATCTTAGATAATGTCAACTATTATGCTGGCAGTAACTC  349

seq1  TGAATATATGATAATGAAGAAACATTTTCATTAAACTTTTACTTGTTCAC  396
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGAATATATGATAGTGAAGAAACATTTTCATTAAACTTTTACTTGTTCAC  399

seq1  CCTCAAATATTATATGATGAAGTCAGGTGTGAAAGCCAGAAGAATATGAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAATATTATATGATGAAGTCAGGTGTGAAAGCCAGAAGAATATGAT  449

seq1  GTTGTGCAACAATTCATGGAGATAGAAATGATCCATTCCAAAAGGAAACT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGCAACAATTCATGGAGATAGAAATGATCCATTCCAAAAGGAAACT  499

seq1  AAATAAAGAGTGTACTATCGCCTTCAAAATGTCTAATAAAACTGGCAGCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGAGTGTACTATCGCCTTCAAAATGTCTAATAAAACTGGCAGCA  549

seq1  TTTTGTATATTTAATTCAAATGAAGAAATTGACACAGATTGTACTTGATA  596
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTTTGTATATTTAATTCAAATGAGGAAATTGACACAGATTGTACTTGATA  599

seq1  GTGTATTTGACAAACTGAGCCACCAAGACTGCATGTTCTTAATCCTATAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTTGACAAACTGAGCCACCAAGACTGCATGTTCTTAATCCTATAA  649

seq1  TATGCCTACAGATGTGAAGTGTGCTTTGAGTATCCAGTATTCATTATTCT  696
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TATGCCTACAGATGTGAAGTGTCCTTTGAGTATCCAGTATTCATTATTCT  699

seq1  TATCACGTCAATGTGACAAATGATTTATTGGTTTCACGTTTCAGGATAGT  746
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TATCACGTCAATGTGACAAATGATTTATTGGTTTCACATTTCAGGATAGT  749

seq1  GACTGACTATGAGTCCCTTATGCTCTGTCAACATCTCCTTCCTCATTGCC  796
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GACTGACTATGATTCCCTTATGCTCTGTCAACATCTCCTTCCTCATTGCC  799

seq1  CTGTAAATAAAGCTGAATATTTTAACAAGGTTGACTTGGCTGTTTTCAGT  846
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTGTAAATAAAGCTGAATATTTTAACAAGGTTGACTTGGCTG-TTTCAGT  848

seq1  TTGCACTTATAATTAGATGAATAAATGTTGCATCATCGCTGGAACTATTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACTTATAATTAGATGAATAAATGTTGCATCATCGCTGGAACTATTT  898

seq1  CTCATAAAGTATTTGCTGAAGTCATGAATATTTTCTGTAAACCTGTAACT  946
      |||||||||||||||||||||||||||||| ||||||| |||||||||||
seq2  CTCATAAAGTATTTGCTGAAGTCATGAATA-TTTCTGT-AACCTGTAACT  946

seq1  TAAACTTAATATTTG-TGATTGTCAGCTGGTCAATAACAACCTTGACCCA  995
      | ||||||||||||| ||||| ||| || ||| |||||||| |||| |||
seq2  T-AACTTAATATTTGTTGATT-TCAACT-GTC-ATAACAACTTTGA-CCA  991

seq1  CATACGAATAATAT-GAATTGTATATAAGTGTTTAGCATTAGAAAATTTA  1044
      ||||||    |||| | ||||||||| ||||||| ||||||||||  |||
seq2  CATACG----ATATAGGATTGTATAT-AGTGTTT-GCATTAGAAA--TTA  1033

seq1  GCAACAGTGTATTA  1058
      ||||| ||||||||
seq2  GCAAC-GTGTATTA  1046

seq1: chr4_146889269_146890475
seq2: B6Ng01-097F20.g_69_1272 (reverse)

seq1  CTAGAAAC-TTAACGCAT--GTATTGTATGAAGAAATATCTTTGAATTCA  47
      |||||||| |||||||||  ||||  ||   |||||| |||||||| |||
seq2  CTAGAAACTTTAACGCATGAGTATGTTAGAGAGAAAT-TCTTTGAA-TCA  48

seq1  TTTTAGTCAGAGAAA-ACATCTAAGAACTTTTTAAGGGAAAGTATTTCTG  96
      || |  ||||||||| || || |||||||||| | ||   ||  || |||
seq2  TTATGTTCAGAGAAACACTTC-AAGAACTTTTAACGG--CAGATTTCCTG  95

seq1  TTGAGAAAAAGGTGGCATATGTTTTATTCATGGC-ATATTCTTGGCAATA  145
      | || ||||| ||||||||||||||||||||||| || |||||| |||||
seq2  TAGA-AAAAAAGTGGCATATGTTTTATTCATGGCAATTTTCTTGCCAATA  144

seq1  CTCAAGGCTCCACACTAGAG--AATTAGTATAATTATGAGAATCTTTTG-  192
      ||||| ||||||||||||||  | ||||||||||||||||||||||||| 
seq2  CTCAA-GCTCCACACTAGAGGAATTTAGTATAATTATGAGAATCTTTTGA  193

seq1  AAAATTTTCATGCAATGTT-CAAATCTTAAATAATGTCGACTCTGACAAT  241
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAAATTTTCATGCAATGTTCCAAATCTTAAATAATGTCGACTCTGACAAT  243

seq1  TTGAAAAAATGTAGCAAGCCTTTCTTTCTTTCTTTCTTTCTTTCTT-TCT  290
      ||||||||||||||||||| ||   ||||||| ||||||||||||| |  
seq2  TTGAAAAAATGTAGCAAGCGTT--CTTCTTTC-TTCTTTCTTTCTTCTTC  290

seq1  TTCTTTCTTTCTTTTTTTTGGGGGGGGGTTGGTTTTTAGAGACAGGGTTT  340
      ||| |||||||  |||||| |||||||||||| |||||||||||||||||
seq2  TTCGTTCTTTC--TTTTTTAGGGGGGGGTTGG-TTTTAGAGACAGGGTTT  337

seq1  CTCTGTATATCCATGGCCATCCTGTAGACCAGGCTGGCCTCGAACTCAGT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTATATCCATGGCCATCCTGTAGACCAGGCTGGCCTCGAACTCAGT  387

seq1  AATCCGCCTGCCTCTCTCTCCCGAGTGCTTGGATTAAAGACATGTGCCAC  440
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AATCCGCCTGCCTCTCTCTCCCGAGTGCTTGGA-TAAAGACATGTGCCAC  436

seq1  CACGCCCAGTTGTAGAAAGCTTTTCATGACACCTTTTTATTTGTTCACCC  490
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CACGCCCAGTTGTAGAAAGCTTTTCATGACACCTTTCTATTTGTTCACCC  486

seq1  TC-AAATGTGGCAAGATGAAGACAAGCTGGGAAGTCAGAAGATAGTATTG  539
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATGTGGCAAGATGAAGACAAGCTGGGAAGTCAGAAGATAGTATTG  536

seq1  TGTAACACTTTCTTTAAGACAGAAATAATCCATTTCAAAAGGAAACTATT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACACTTTCTTTAAGACAGAAATAATCCATTTCAAAAGGAAACTATT  586

seq1  TAAGGTCTTTAATACAATCCTCAAAATATCTAATAAAACTGGTAACATTC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTCTTTAATACAATCCTCAAAATATCTAATAAAACTGGTAACATTC  636

seq1  TGTATATTTAATTAAAATGAACCAATTAAGATAAAAATATACTTAAAAGA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATTTAATTAAAATGAACCAATTAAGATAAAAATATACTTAAAAGA  686

seq1  TTATCTGGCAAACTGAGCTACCCAGACAGCATATTCTTTATTCTATAAAT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGGCAAACTGAGCTACCCAGACAGCATATTCTTTATTCTATAAAT  736

seq1  ATGCTTGCAGATGTGAAGTGTGCTTCGAGTATCCAGTAATCATAATTCTT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTGCAGATGTGAAGTGTGCTTCGAGTATCCAGTAATCATAATTCTT  786

seq1  CTCAAATACTTGTTTCACATTATAGGATAACAAGTGACTCCGAGTCTCTT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATACTTGTTTCACATTATAGGATAACAAGTGACTCCGAGTCTCTT  836

seq1  GTGATCTGCTCAACAACTCCTTTCCTATTGTCCTGTAACTAACTCCAATA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCTGCTCAACAACTCCTTTCCTATTGTCCTGTAACTAACTCCAATA  886

seq1  AAGCTGAAAGATTCTACAAGGTTGCTTTGGTTGTTTTCAACTTGCCCTTG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGAAAGATTCTACAAGGTTGCTTTGGTTGTTTTCAACTTGCCCTTG  936

seq1  GGATACTCAGATGAATATATGTTGCATCTTCCCAGGAAATGCCTCACATA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACTCAGATGAATATATGTTGCATCTTCCCAGGAAATGCCTCACATA  986

seq1  AAACATATGCAGAAGTCATGAAATTTTTGCAAACCTGTATCATAAAGTTA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATATGCAGAAGTCATGAAATTTTTGCAAACCTGTATCATAAAGTTA  1036

seq1  ATAGTAGTGATTTTCAACTGGTGGATAACAATCCCTTTGGGATGTAACGA  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAGTGATTTTCAACTGGTGGATAACAATCCCTTTGGGATGTAACGA  1086

seq1  CCCTGTCACAGTTATTGCTTAAAAGTACAGGGAAACACATATTTCCAATT  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCACAGTTATTGCTTAAAAGTACAGGGAAACACATATTTCCAATT  1136

seq1  GTCTTAAAACTGCGAAATCATTCATTGAACTGCAGGGTAGTTTGCCCTGC  1189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAAAACTGCGAAATCATTCATTGAACTGCAGGGTAGTTTGCCCTGC  1186

seq1  TAAAAATAATTAGAATTC  1207
      ||||||||||||||||||
seq2  TAAAAATAATTAGAATTC  1204