BAC Information

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BAC

Clone NameB6Ng01-097O16
Chromosome4 (Build37)14 (Build37)
Map Location 25,623,383 - 25,624,51536,721,141 - 36,721,696
singlet/doubletsingletsinglet
Overlap geneFut9
Upstream geneKlhl32, 1110007M04Rik, C230012O17Rik, Gpr63, Fhl5, 1810074P20Rik, Prdx6-rs2, LOC665019, LOC625732
Downstream geneLOC100040780, Hn1-ps1, Manea, Bhmt-ps1, LOC665079, Gng2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097O16.bB6Ng01-097O16.g
ACCDH908160DH908161
length1,1211,038
definitionDH908160|Mus musculus domesticus DNA, BAC clone: B6Ng01-097O16, 5' end.DH908161|Mus musculus domesticus DNA, BAC clone: B6Ng01-097O16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(25,623,383 - 25,624,515)(36,721,141 - 36,721,696)
sequence
gaattctcttactgcagtgttggctcctcctcctccttgcagtagaattc
tcttactgcagtgttggctttctttctgcacttccgacctctgctgctct
gtaatacggtgattgtgttcttctcttcttctcactgtattttccaaaaa
ctgctcttccttttctccttgagaaatatcccagtgaaataatgggcctg
ggttagctcacattatgcgatgtgcccggttctatccctcttggaaaact
aattgctgcactacgaacagatgactcacttcaatgtcacccttgagagg
gagcttgaatttgaagattagacaaaataataaatgattcccatatctcc
catttactggctgacttgacatttcctgcctatttcacactttacaagaa
ccctgttttaaaagatagctgtgacatagtgaaattatatagaaaatata
tagcacacccttcatacatagaagaaaccaccagagaaaaagataaatct
tgtttgtgttttttctttttttcttttttttttgtttcactaggggactt
atgagtcttagttccaaacattcattgtcactacctgactcttagactta
agccaggttaattaactattctcatttaaaatgataacatcccaagctga
aagacaacagtaaaacaacaaatgataattaagccagcaaacaatgtcaa
cctgcatgctaggtgtgtactgcaagttgtaactgggattaagcttcaaa
aacacataacttagatgcaatcttctcactagttatgtgatccaagaata
agcaactcgggaagggaagagcgagaagagaagttccctttgccagcacc
tccatgagctctgtactggtctctgacacagttttaatttcctgttcact
gtaaatgatacttggctattactggaattagttccctcagactaaatttg
tttccagaagcttctattaacttcctcagagtgtagaggattacatcctg
cttgcaactcacttgagatacatttctttcttctaaatagacatttaaca
ctttttgtagtgtttacgtcaagttcatattgcccaaacagcgagagaga
atgcctcatggatacctgctg
gaattctttgtttagctctgagtcccatttttaatggggttatacgattt
tttggagttcaccttcttgagttctttatatatattggatattaatcccc
tatgtgatttgggattggtaaagatcctttcccaatctcttggtggcctt
tttgtcttattgagagtgtcttttgacttacagaagctttgcaattttat
gaggtcccagttttcaattctcgatcctatagcacaagccattgctgttc
tattcaggaattttccccctgtgcccatatctttgaggcttttccccact
ttctcctctataagcttcactgtctctggttttatgtggagttccttgat
ccacttagatttgaccttagtacaaggagataggaatggatcgattcaca
ttcttccacatgataaccaccagttgtgccagcaccatttttttgaaaat
gctgtctttttccactggatggttttagctcccttgtcaaagatcaagtg
accataggtgtttgggttcatttctgggtctttaattctattccattagt
ctacttgtctgtcgctataccagtaccatgccattttttatcataattgc
tttgtagtacagctttggtcaggcatgatgattccaccagaggttctttt
atccttgagaagagtttttgctatcctaggttttttgttattccagatga
atttgcagattgtactttctaattcatttgaagaattgagttggaatttt
gatgggggattgcattgaatctgtagattgcttttggcaagatacccatt
gttactatattgatcctgccaatccatgagcctgggagatctttccatct
tctgagatcttctttaattcttcttcagagacttgaagttcttatcatac
agatctttcacttccctagttagaggtacaccaatgtatttttatatttt
ttgtgactattgaagagggtgtgttccttatttctttctcagcctgttta
atcctttgtatagagaaaggacattgtacttgtttgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_25623383_25624515
seq2: B6Ng01-097O16.b_49_1169 (reverse)

seq1  CAGCAAGTATCCATGAGGCA-TCTCTCTCGCTTGTTTTTGTGGCAAATAT  49
      ||||| |||||||||||||| |||||||||| ||||    |||  |||||
seq2  CAGCAGGTATCCATGAGGCATTCTCTCTCGC-TGTT----TGGGCAATAT  45

seq1  GAACTTTGACGGTATACAACTAC-AAAAGTGTAAATTGTCTATATAGGAA  98
      |||| ||||| ||| || ||||| |||||||| || ||||||| |||  |
seq2  GAAC-TTGAC-GTAAAC-ACTACAAAAAGTGTTAAATGTCTATTTAG--A  90

seq1  AGAAAGAAATGTAATCTCAAGTGAG-TGCAAGCAGGATGTAATCCTCTAA  147
      |||||||||||| |||||||||||| |||||||||||||||||||||| |
seq2  AGAAAGAAATGT-ATCTCAAGTGAGTTGCAAGCAGGATGTAATCCTCT-A  138

seq1  CACTCTGAGGAAGTTTAATAGAAGCTTCTGGAAACAAATTTAGTCTTGAG  197
      ||||||||||||| ||||||||||||||||||||||||||||||| ||||
seq2  CACTCTGAGGAAG-TTAATAGAAGCTTCTGGAAACAAATTTAGTC-TGAG  186

seq1  GGAACCTAATTCCAGTAATAGCCAAGTATCATTTACAGTGAACAGGAAAT  247
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAA-CTAATTCCAGTAATAGCCAAGTATCATTTACAGTGAACAGGAAAT  235

seq1  TAAAACTGTGTCAGAGACCAGTACAGAGCTCATGGAGGTGCTGGCAAAGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTGTGTCAGAGACCAGTACAGAGCTCATGGAGGTGCTGGCAAAGG  285

seq1  GAACTTCTCTTCTCGCTCTTCCCTTCCCGAGTTGCTTATTCTTGGATCAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTCTCTTCTCGCTCTTCCCTTCCCGAGTTGCTTATTCTTGGATCAC  335

seq1  ATAACTAGTGAGAAGATTGCATCTAAGTTATGTGTTTTTGAAGCTTAATC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTAGTGAGAAGATTGCATCTAAGTTATGTGTTTTTGAAGCTTAATC  385

seq1  CCAGTTACAACTTGCAGTACACACCTAGCATGCAGGTTGACATTGTTTGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTACAACTTGCAGTACACACCTAGCATGCAGGTTGACATTGTTTGC  435

seq1  TGGCTTAATTATCATTTGTTGTTTTACTGTTGTCTTTCAGCTTGGGATGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTAATTATCATTTGTTGTTTTACTGTTGTCTTTCAGCTTGGGATGT  485

seq1  TATCATTTTAAATGAGAATAGTTAATTAACCTGGCTTAAGTCTAAGAGTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTTTAAATGAGAATAGTTAATTAACCTGGCTTAAGTCTAAGAGTC  535

seq1  AGGTAGTGACAATGAATGTTTGGAACTAAGACTCATAAGTCCCCTAGTGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGTGACAATGAATGTTTGGAACTAAGACTCATAAGTCCCCTAGTGA  585

seq1  AACAAAAAAAAAAGAAAAAAAGAAAAAACACAAACAAGATTTATCTTTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAAAAAAGAAAAAAAGAAAAAACACAAACAAGATTTATCTTTTT  635

seq1  CTCTGGTGGTTTCTTCTATGTATGAAGGGTGTGCTATATATTTTCTATAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTGGTTTCTTCTATGTATGAAGGGTGTGCTATATATTTTCTATAT  685

seq1  AATTTCACTATGTCACAGCTATCTTTTAAAACAGGGTTCTTGTAAAGTGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCACTATGTCACAGCTATCTTTTAAAACAGGGTTCTTGTAAAGTGT  735

seq1  GAAATAGGCAGGAAATGTCAAGTCAGCCAGTAAATGGGAGATATGGGAAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGGCAGGAAATGTCAAGTCAGCCAGTAAATGGGAGATATGGGAAT  785

seq1  CATTTATTATTTTGTCTAATCTTCAAATTCAAGCTCCCTCTCAAGGGTGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATTATTTTGTCTAATCTTCAAATTCAAGCTCCCTCTCAAGGGTGA  835

seq1  CATTGAAGTGAGTCATCTGTTCGTAGTGCAGCAATTAGTTTTCCAAGAGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAAGTGAGTCATCTGTTCGTAGTGCAGCAATTAGTTTTCCAAGAGG  885

seq1  GATAGAACCGGGCACATCGCATAATGTGAGCTAACCCAGGCCCATTATTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAACCGGGCACATCGCATAATGTGAGCTAACCCAGGCCCATTATTT  935

seq1  CACTGGGATATTTCTCAAGGAGAAAAGGAAGAGCAGTTTTTGGAAAATAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGATATTTCTCAAGGAGAAAAGGAAGAGCAGTTTTTGGAAAATAC  985

seq1  AGTGAGAAGAAGAGAAGAACACAATCACCGTATTACAGAGCAGCAGAGGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGAAGAAGAGAAGAACACAATCACCGTATTACAGAGCAGCAGAGGT  1035

seq1  CGGAAGTGCAGAAAGAAAGCCAACACTGCAGTAAGAGAATTCTACTGCAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAGTGCAGAAAGAAAGCCAACACTGCAGTAAGAGAATTCTACTGCAA  1085

seq1  GGAGGAGGAGGAGCCAACACTGCAGTAAGAGAATTC  1133
      ||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGAGGAGCCAACACTGCAGTAAGAGAATTC  1121

seq1: chr14_36721141_36721696
seq2: B6Ng01-097O16.g_551_1106 (reverse)

seq1  TCAAACAAGT-CAATGGCCTTTCTCTACACAAA-GAATAAACAGGCTGAG  48
      |||||||||| ||||| |||||||||| ||||| || |||||||||||||
seq2  TCAAACAAGTACAATGTCCTTTCTCTATACAAAGGATTAAACAGGCTGAG  50

seq1  AAAGAAATTAGAGATACAACACCCTTCTCAATAGTCACAAATAATAT-AA  97
      |||||||| || || || |||||||  |||||||||||||| ||||| ||
seq2  AAAGAAATAAG-GA-AC-ACACCCTCTTCAATAGTCACAAAAAATATAAA  97

seq1  AATATCTTGGCGTGACTCTAACTAAGGAAGTGAAAGAACTGTATGAAAAG  147
      ||||  |||| ||  ||||||||| |||||||||||| |||||||| |||
seq2  AATACATTGGTGTACCTCTAACTAGGGAAGTGAAAGATCTGTATGATAAG  147

seq1  AACTTCAAGTATATGAAGAAAGAAATTAAAGAAGGTCTCAGAAGATGGAA  197
      |||||||||| | |||||||   ||||||||||| |||||||||||||||
seq2  AACTTCAAGTCTCTGAAGAA--GAATTAAAGAAGATCTCAGAAGATGGAA  195

seq1  AGATCTCCCATGCTCATGGATTGGCAGGATCAATATAGTAAAAATGGCTA  247
      |||||||||| |||||||||||||||||||||||||||||| ||||| ||
seq2  AGATCTCCCAGGCTCATGGATTGGCAGGATCAATATAGTAACAATGGGTA  245

seq1  TCTTGCCAAAAGCAATCTACAGATTCAATGCAAT-CCCCATCAAAATTCC  296
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCCATCAAAATTCC  295

seq1  AACTCAATTCTTC-AACGAATTGGAAAGAACAATCTGCAAATTCATCTGG  345
      ||||||||||||| || ||||| ||||| |||||||||||||||||||||
seq2  AACTCAATTCTTCAAATGAATTAGAAAGTACAATCTGCAAATTCATCTGG  345

seq1  AATAACAAAGAACCTAGGATAGCAAAAACTCTTCTCAAGGATAAAAGAAC  395
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAAAAAACCTAGGATAGCAAAAACTCTTCTCAAGGATAAAAGAAC  395

seq1  CTCTGGTGGAATCACCATGCCTGACCTAAAGCTGTACTACAGAGCAATTG  445
      |||||||||||||| ||||||||||| |||||||||||||| ||||||| 
seq2  CTCTGGTGGAATCATCATGCCTGACC-AAAGCTGTACTACAAAGCAATTA  444

seq1  TGATAAAAACT-GCATGGTACTGGTATAGCGACAGACAAGTAGACCAGTG  494
      ||||||||| | ||||||||||||||||||||||||||||||||| | ||
seq2  TGATAAAAAATGGCATGGTACTGGTATAGCGACAGACAAGTAGACTAATG  494

seq1  GAATAGAACTGAAGACCCAGAAATGAACCCACACACCTATGGTCCCTTGA  544
      |||||||| | |||||||||||||||||||| |||||||||||| |||||
seq2  GAATAGAATTAAAGACCCAGAAATGAACCCAAACACCTATGGTCACTTGA  544

seq1  TCTTTGACAAGG  556
      ||||||||||||
seq2  TCTTTGACAAGG  556