BAC Information

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BAC

Clone NameB6Ng01-098C07
Chromosome4 (Build37)
Map Location 65,555,320 - 65,683,717
singlet/doubletdoublet
Overlap geneAstn2
Upstream genePappa, Trim32
Downstream geneLOC667499, Tlr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098C07.bB6Ng01-098C07.g
ACCDH908318DH908319
length1,006987
definitionDH908318|Mus musculus domesticus DNA, BAC clone: B6Ng01-098C07, 5' end.DH908319|Mus musculus domesticus DNA, BAC clone: B6Ng01-098C07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,555,320 - 65,556,327)(65,683,201 - 65,683,717)
sequence
gaattcccttctctctcttccattcattgaaattacaggtggactgtaat
gcccacctgtcattttatggaagatttggggatccaaatttggcttgtgc
tcaacctgttgcacaatctccccagcgcctcatgtccttaaagcaagaaa
gccccagcttgtgaattgccatcattgcttggtgtcttttcagtttggac
agtttttcttactatactgctccgatggctttcatgtttgtttgtttgtt
ttttaattattctgtttacattccagttgttcccccactcactcccccac
cccacggttcctcatccaattcctcttccccattgtcttcgagagggtgc
tcccccttccctggggcctcacgtctctctaggagtaagcaaatcttctc
ccaccgatgccagaccaggcaaatctctggtacatatgtgccaagggcct
cgtaccagcccatgtgtgctcctggttagtaattcaatccctgagagctc
cctggggtcagggctggttgagactgctggtcttccttatttgtccctct
ccctttcagcttctacaatctttcccttaagtaaatcatagtgttccctg
actccagtccaatggtttggtgaaagtgtctgcttctgtctcagtcagct
gcccactcctgtccttcctcataatcagattcaggttatgtacattagtc
agaatcgccaacaaggatgctgttgtctccgcgcatcctgtcgagaggca
cacaggaaggtgttattgacttggtcaatggcaaagatgaaattgttgcc
ttactctaagctataatttcatccttcttagcgacttgttactcaggaca
agatattttgaggctacttggatattccatgactccaaattttctcataa
ctatatatgcacttgaggttttaaagaaatttccaatttttagaagtgcc
cagtacaggggagcgccagggccaggaagaagcgggagtgggtgggttgg
agagca
gaattcaactgaattttagttgcaatttgtacttttctatgtagtcaaga
agggtagtaattataaaaaaaaaaaatacttggcgctttctgtgccaccc
tacaatagaggcaggtcttctgaggatgtcatagaattcacctttatata
ttcttaagtcagggcacttactgtgaacactggttgtctaatttaaggtt
cctattgctaagtaagctagggagaaaagggcttattttgcttctacttc
tgtattactcttcattgtcattgaaggaagaagtcaggacaggatctcaa
acaaggtaggaatctagaggcaggagctgatgcaaggtcatggaggggtg
ccgtttcttaccttacttctcatggcttgttcagcagcctttcttaaaga
acccaggaccaccagccaagggatgacagcacccacagtgagctgggccc
tctcctgtcaatcactaattgagaaaatgctttataggcctgcccacaac
ctgatggaggcattttcttaattgaggctccctcctctcagatgacttta
ggtagagtcaaattaacgtaaaagtatggagcatactcaccatgcacaag
acctcttttggatatgcatactattttgtgaatcccctagccaccaatca
agttggtgtagtatttattttctagctgaagaatcatgtcaaagaaattc
taatggtgaggtgcagttaccctgaaatgtagcctttggtaactcatata
ggcaagagcggaaagaggggcttctttgcgggagaaggcttggagtcttt
tttttttcataatcaatttttattacgtattttcctcatttacatttcca
atgctatcccaaaagtcccccataccctccctgccccactcccctactca
cccactcccacttcgtggccctggcgttccctgtactgaggcatatgaac
tttgcaagaccaaggcctctctttccactgatggccg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_65555320_65556327
seq2: B6Ng01-098C07.b_49_1054

seq1  GAATTCCCTTCTCTCTCTTCCATTCATTGAAATTACAGGTGGACTGTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTCTCTCTCTTCCATTCATTGAAATTACAGGTGGACTGTAAT  50

seq1  GCCCACCTGTCATTTTATGGAAGATTTGGGGATCCAAATTTGGCTTGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACCTGTCATTTTATGGAAGATTTGGGGATCCAAATTTGGCTTGTGC  100

seq1  TCAACCTGTTGCACAATCTCCCCAGCGCCTCATGTCCTTAAAGCAAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCTGTTGCACAATCTCCCCAGCGCCTCATGTCCTTAAAGCAAGAAA  150

seq1  GCCCCAGCTTGTGAATTGCCATCATTGCTTGGTGTCTTTTCAGTTTGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGCTTGTGAATTGCCATCATTGCTTGGTGTCTTTTCAGTTTGGAC  200

seq1  AGTTTTTCTTACTATACTGCTCCGATGGCTTTCATGTTTGTTTGTTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTCTTACTATACTGCTCCGATGGCTTTCATGTTTGTTTGTTTGTT  250

seq1  TTTTAATTATTCTGTTTACATTCCAGTTGTTCCCCCACTCACTCCCCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTATTCTGTTTACATTCCAGTTGTTCCCCCACTCACTCCCCCAC  300

seq1  CCCACGGTTCCTCATCCAATTCCTCTTCCCCATTGTCTTCGAGAGGGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACGGTTCCTCATCCAATTCCTCTTCCCCATTGTCTTCGAGAGGGTGC  350

seq1  TCCCCCTTCCCTGGGGCCTCACGTCTCTCTAGGAGTAAGCAAATCTTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTTCCCTGGGGCCTCACGTCTCTCTAGGAGTAAGCAAATCTTCTC  400

seq1  CCACCGATGCCAGACCAGGCAAATCTCTGGTACATATGTGCCAAGGGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCGATGCCAGACCAGGCAAATCTCTGGTACATATGTGCCAAGGGCCT  450

seq1  CGTACCAGCCCATGTGTGCTCCTGGTTAGTAATTCAATCCCTGAGAGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACCAGCCCATGTGTGCTCCTGGTTAGTAATTCAATCCCTGAGAGCTC  500

seq1  CCTGGGGTCAGGGCTGGTTGAGACTGCTGGTCTTCCTTATTTGTCCCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGTCAGGGCTGGTTGAGACTGCTGGTCTTCCTTATTTGTCCCTCT  550

seq1  CCCTTTCAGCTTCTACAATCTTTCCCTTAAGTAAATCATAGTGTTCCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCAGCTTCTACAATCTTTCCCTTAAGTAAATCATAGTGTTCCCTG  600

seq1  ACTCCAGTCCAATGGTTTGGTGAAAGTGTCTGCTTCTGTCTCAGTCAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGTCCAATGGTTTGGTGAAAGTGTCTGCTTCTGTCTCAGTCAGCT  650

seq1  GCCCACTCCTGTCCTTCCTCATAATCAGATTCAGGTTATGTACATTAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACTCCTGTCCTTCCTCATAATCAGATTCAGGTTATGTACATTAGTC  700

seq1  AGAATCGCCAACAAGGATGCTGTTGTCTCCGCGCATCCTGTCGAGAGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCGCCAACAAGGATGCTGTTGTCTCCGCGCATCCTGTCGAGAGGCA  750

seq1  CACAGGAAGGTGTTATTGACTTGGTCAATGGCAAAGATGAAATTGTTGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAAGGTGTTATTGACTTGGTCAATGGCAAAGATGAAATTGTTGCC  800

seq1  TTACTCTAAGCTATAATTTCATCCTTCTTAGCGACTTGTTACTCAGGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTAAGCTATAATTTCATCCTTCTTAGCGACTTGTTACTCAGGACA  850

seq1  AGATATTTTGAGGCTACTTGGATATTCCATGACTCCAAATTTTCTCATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTTTGAGGCTACTTGGATATTCCATGACTCCAAATTTTCTCATAA  900

seq1  CTATAATATGCACTTGAGGTTTTAAAGAAATTTCCAATTTTTAGAAGTGC  950
      |||| |||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTAT-ATATGCACTTGAGGTTTTAAAGAAATTTCCAATTTTTAGAAGTG-  948

seq1  CCCAGTACAGGGGAGCGCCAGGGCCAGGAAGAAGCGGGAGTGGGTGGGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTACAGGGGAGCGCCAGGGCCAGGAAGAAGCGGGAGTGGGTGGGTT  998

seq1  GGAGAGCA  1008
      ||||||||
seq2  GGAGAGCA  1006

seq1: chr4_65683201_65683717
seq2: B6Ng01-098C07.g_70_586 (reverse)

seq1  GAAAATGCCTCCATCAGGTTGTGGGCAGGCCTATAAAGCATTTTCTCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGCCTCCATCAGGTTGTGGGCAGGCCTATAAAGCATTTTCTCAAT  50

seq1  TAGTGATTGACAGGAGAGGGCCCAGCTCACTGTGGGTGCTGTCATCCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGATTGACAGGAGAGGGCCCAGCTCACTGTGGGTGCTGTCATCCCTT  100

seq1  GGCTGGTGGTCCTGGGTTCTTTAAGAAAGGCTGCTGAACAAGCCATGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGTGGTCCTGGGTTCTTTAAGAAAGGCTGCTGAACAAGCCATGAGA  150

seq1  AGTAAGGTAAGAAACGGCACCCCTCCATGACCTTGCATCAGCTCCTGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGGTAAGAAACGGCACCCCTCCATGACCTTGCATCAGCTCCTGCCT  200

seq1  CTAGATTCCTACCTTGTTTGAGATCCTGTCCTGACTTCTTCCTTCAATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATTCCTACCTTGTTTGAGATCCTGTCCTGACTTCTTCCTTCAATGA  250

seq1  CAATGAAGAGTAATACAGAAGTAGAAGCAAAATAAGCCCTTTTCTCCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAGAGTAATACAGAAGTAGAAGCAAAATAAGCCCTTTTCTCCCTA  300

seq1  GCTTACTTAGCAATAGGAACCTTAAATTAGACAACCAGTGTTCACAGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACTTAGCAATAGGAACCTTAAATTAGACAACCAGTGTTCACAGTAA  350

seq1  GTGCCCTGACTTAAGAATATATAAAGGTGAATTCTATGACATCCTCAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCTGACTTAAGAATATATAAAGGTGAATTCTATGACATCCTCAGAA  400

seq1  GACCTGCCTCTATTGTAGGGTGGCACAGAAAGCGCCAAGTATTTTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGCCTCTATTGTAGGGTGGCACAGAAAGCGCCAAGTATTTTTTTTT  450

seq1  TTTATAATTACTACCCTTCTTGACTACATAGAAAAGTACAAATTGCAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAATTACTACCCTTCTTGACTACATAGAAAAGTACAAATTGCAACT  500

seq1  AAAATTCAGTTGAATTC  517
      |||||||||||||||||
seq2  AAAATTCAGTTGAATTC  517