BAC Information

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BAC

Clone NameB6Ng01-098H06
Chromosome4 (Build37)
Map Location 92,029,875 - 92,031,044
singlet/doubletsinglet
Overlap genenone
Upstream geneElavl2, LOC664864, LOC620016, LOC654475, 4930577H14Rik, LOC664886, 1700011H22Rik, LOC68280
Downstream geneLOC620269, LOC384125, Tusc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098H06.bB6Ng01-098H06.g
ACCDH908541DH908542
length5991,140
definitionDH908541|Mus musculus domesticus DNA, BAC clone: B6Ng01-098H06, 5' end.DH908542|Mus musculus domesticus DNA, BAC clone: B6Ng01-098H06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagctccagtaggtagacagggcccaagttaatgcatgtggtcac
ccacacatcttctaatttattaacccagaatgtcttctatctgaagtgaa
tagatgaacaacaatggagcagacaatgaaagaaaggccatccagtgaca
tgtcctagttgggatccatctcatggcatgtggggcaccagggcctgaca
ctattactgatgctatgatgtgcttaccgactggagcctggtatggctgt
tctctgagaggctctaccagtacctgattgagtcagatacagatacttac
agccaaccactgaactaaagttgggagcccctatgtaaaagttagggaaa
ggatagaaggaggtgaaggggatggcaaccccataagaagaacaacagta
tcaactaacccgaaacccttactcccagaaactaagccatcagccaaaga
gcgtacatgggctagtctgtggcacctgacacatatgcagcagacgactg
tcttgtctggactcagtggggaaaaaattgcctaatcctgtagatacttg
aagccctagggaagggcgatgctagtgggggtgaggtgggattggatat

gaattcaacatatgaggtaaaacttaagagctgattattttaaagtgtag
gctgacaggaatggaaataaacaatttttgttacatttaccatgacttta
atttgatcttctttaaagtgagatatggaaaatacaggttacattttaca
aaaagactaacaagtccattctttgtattcaacatcaggtttgatttctt
aaaatgagcaaaatataaatagtagtaaacattaaaattttctaataaag
gttaaatattttaatgtcctagactagttctaagaccagtgatagctaaa
aatcaaacttaaaatatcaaattatggctatgatctcatggtgaactcta
tgtggaaggaaatatactgcatttaatttaatgtctaactcttttataaa
tatccaagagggatgagctaaagccaagttggaaataccaggagaacaat
aacagaaagtaaaaacaatgaaacaggcttggcagcattgaaaatgaaga
actcataactacacacaatagacttcactgctcgctggtcttcagattgc
tttcataccccatggaattgaacaaataaagccaaatacatgccatttga
agggaacagaaatatcttacagtgggaaatattctaggtggcagaaagaa
aaagtttcaataactcaaacaaatgaaacattactcagaaatatttaaca
atagatctttaaagtgaatggttaagaaacaacatatgcaaaatgacttg
gcaggttaaaatatcatgacattcatattgttccttttccaaaacattaa
tatgtaattttgcaaggaaactacatatctaaaactttgaaaattgcagt
ttcccatagatatactttgataaatacaagcatatagttaacatatatac
ttaaatatgctttgaaaagtactatcaaccacatgtttaccataatatag
ataaaattagtaccctgcttggatgtatacaatgccattgtaaaatgagt
ggaagaagtgctgaaagaaatagggcattgattaaaaatgaaagacacag
caacatacaatgaccaattgtatagatacagtatctaggtaaacatggga
tctattctatcccaacatcatcagttgccaagtcttgtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_92029875_92031044
seq2: B6Ng01-098H06.g_66_1205

seq1  GAATTCAACATATGAGGTAAAACTTAAGAGCTGATTATTTTAAAGTGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACATATGAGGTAAAACTTAAGAGCTGATTATTTTAAAGTGTAG  50

seq1  GCTGACAGGAATGGAAATAAACAATTTTTGTTACATTTACCATGACTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACAGGAATGGAAATAAACAATTTTTGTTACATTTACCATGACTTTA  100

seq1  ATTTGATCTTCTTTAAAGTGAGATATGGAAAATACAGGTTACATTTTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATCTTCTTTAAAGTGAGATATGGAAAATACAGGTTACATTTTACA  150

seq1  AAAAGACTAACAAGTCCATTCTTTGTATTCAACATCAGGTTTGATTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACTAACAAGTCCATTCTTTGTATTCAACATCAGGTTTGATTTCTT  200

seq1  AAAATGAGCAAAATATAAATAGTAGTAAACATTAAAATTTTCTAATAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAGCAAAATATAAATAGTAGTAAACATTAAAATTTTCTAATAAAG  250

seq1  GTTAAATATTTTAATGTCCTAGACTAGTTCTAAGACCAGTGATAGCTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATATTTTAATGTCCTAGACTAGTTCTAAGACCAGTGATAGCTAAA  300

seq1  AATCAAACTTAAAATATCAAATTATGGCTATGATCTCATGGTGAACTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAACTTAAAATATCAAATTATGGCTATGATCTCATGGTGAACTCTA  350

seq1  TGTGGAAGGAAATATACTGCATTTAATTTAATGTCTAACTCTTTTATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAGGAAATATACTGCATTTAATTTAATGTCTAACTCTTTTATAAA  400

seq1  TATCCAAGAGGGATGAGCTAAAGCCAAGTTGGAAATACCAGGAGAACAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAAGAGGGATGAGCTAAAGCCAAGTTGGAAATACCAGGAGAACAAT  450

seq1  AACAGAAAGTAAAAACAATGAAACAGGCTTGGCAGCATTGAAAATGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAAGTAAAAACAATGAAACAGGCTTGGCAGCATTGAAAATGAAGA  500

seq1  ACTCATAACTACACACAATAGACTTCACTGCTCGCTGGTCTTCAGATTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATAACTACACACAATAGACTTCACTGCTCGCTGGTCTTCAGATTGC  550

seq1  TTTCATACCCCATGGAATTGAACAAATAAAGCCAAATACATGCCATTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATACCCCATGGAATTGAACAAATAAAGCCAAATACATGCCATTTGA  600

seq1  AGGGAACAGAAATATCTTACAGTGGGAAATATTCTAGGTGGCAGAAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACAGAAATATCTTACAGTGGGAAATATTCTAGGTGGCAGAAAGAA  650

seq1  AAAGTTTCAATAACTCAAACAAATGAAACATTACTCAGAAATATTTAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTCAATAACTCAAACAAATGAAACATTACTCAGAAATATTTAACA  700

seq1  ATAGATCTTTAAAGTGAATGGTTAAGAAACAACATATGCAAAATGACTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATCTTTAAAGTGAATGGTTAAGAAACAACATATGCAAAATGACTTG  750

seq1  GCAGGTTAAAATATCATGACATTCATATTGTTCCTTTTCCAAAACATTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTTAAAATATCATGACATTCATATTGTTCCTTTTCCAAAACATTAA  800

seq1  TATGTAATTTTGCAAGGAAACTACATATCTAAAACTTTGAAAATTGCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAATTTTGCAAGGAAACTACATATCTAAAACTTTGAAAATTGCAGT  850

seq1  TTCCCATAGATATACTTTGATAAATACAAGCATATAGTTAACATATATAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATAGATATACTTTGATAAATACAAGCATATAGTTAACATATATAC  900

seq1  TTAAATATGCTTTGAAAAGTACTATCAACCACAATGTTTACCATAATATA  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTAAATATGCTTTGAAAAGTACTATCAACCAC-ATGTTTACCATAATATA  949

seq1  GATAAAATTAGGTACCCTGCTTGGATGTATACAATGCCATTGTAAAAATG  1000
      |||||||||| |||||||||||||||||||||||||||||||| ||||||
seq2  GATAAAATTA-GTACCCTGCTTGGATGTATACAATGCCATTGT-AAAATG  997

seq1  AGTGGAAGAAGTGCTGGAAAAGAGATAGGGCATTGATTAAAAAATGAAAG  1050
      ||||||||||||||||  ||||| |||||||||||||| |||||||||||
seq2  AGTGGAAGAAGTGCTG--AAAGAAATAGGGCATTGATT-AAAAATGAAAG  1044

seq1  GACCACAAGCCAACATACAAATGACCAATTGGTATAGAATAACCAGTATC  1100
          |||   |||||||| ||||||||||| |||||| |||  |||||||
seq2  ----ACACAGCAACATAC-AATGACCAATT-GTATAG-ATA--CAGTATC  1085

seq1  TAGGGTAGACCATGGGGAATTCCATATCTCTAATTCTCAACATTCATCAG  1150
      || |||| | ||||||    || ||   ||||  || ||||| |||||||
seq2  TA-GGTA-AACATGGG---ATCTAT---TCTA--TCCCAACA-TCATCAG  1124

seq1  TTGCACAAGGTTCTTTGTCT  1170
      |||| ||||  || ||||||
seq2  TTGC-CAAG--TC-TTGTCT  1140


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