BAC Information

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BAC

Clone NameB6Ng01-098L08
Chromosome4 (Build37)
Map Location 8,096,108 - 8,214,120
singlet/doubletdoublet
Overlap geneCar8
Upstream geneLOC666700, LOC100039494
Downstream geneLOC100039505, LOC100039478, Rab2, EG666752, LOC666760, Chd7, LOC666782, LOC100039584, 4933402J24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098L08.bB6Ng01-098L08.g
ACCDH908722DH908723
length1,210779
definitionDH908722|Mus musculus domesticus DNA, BAC clone: B6Ng01-098L08, 5' end.DH908723|Mus musculus domesticus DNA, BAC clone: B6Ng01-098L08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,096,108 - 8,097,366)(8,213,342 - 8,214,120)
sequence
gaattcaatatgtcattcaataaaataatactatttaaaatatatgcctc
ttcagttagcaaataaaaagcacttctaagaagcaaacaaaagagagtaa
aagggcaggagcaacatgaccaaagtaggtcatatacacgaaaatgtcac
acataaacctattatcctgtataagtaacatatgctaacaacaaagactt
ctccaggactttcagacatgcccaatcagcccttcatacaccgctgaaca
aatgaccctacaaggtgctaaacaggaaggctaattcttctaggcctttc
atgctccatgatcacaggaagttgctgctgtatcttcagatgacaaagtg
aatgctaaagagaccgctgcaaattcctgcctcttaaccccacgtgttct
tccttaggaaagccaccagtaaggcagaaattgggatcaaggattttcaa
gtgagaaaataaagatttaagaaaatatattgcatgaaacgaaaggactg
ccctgacttgtgactaacggagccagaggatgcaccataatgtcttacag
tgacatgcatttcagcagtcagtctgtagaatgactttgggatgctgggc
taaggtgtctcacttccttgtctaattttacatacactgatgcagatggg
tttgttcccggtctctctggctactgaaaggccgctcggatgactctatc
actcaagggctgggtaggtcggaaattgtctcccaaaatcccatcgcagc
cctccaccagttctgcccccttgacatgtgtcctcagccttcgaaattct
tctatctggaaagagaagcagaataaagaagattagtcactaaccataca
tatgcaagttcagaatttcataagcaatttaaatttccataaattatagt
ataaaagagaaaatgaaagtgaacctcaaaacagaaaagagaactggaaa
aaaaacccagtgttaagaaagcatgctgcccttgcagaggactgagtcca
gtgcccagtacccacataggatatattccccacttctggctcaaggtact
tgcaacacacaccacacaatatacaacacacagtacatttaaaatatata
atcaaaatttagccagtaagacgattgtgttcgaacctaagattaacatg
cttaagagaacatggacgtaattcatgtttacagacctctagttgttaat
gtggaatcca

gaattctctgtttagatctgtaccccatttttaaaattggcctacttgtt
tttttgtttaaaccaagtttcttgagtttatttcggatattggccttcta
tcagatgtgtggttggtaaaaatcttctcccactctgtaggctgctactt
tgtccttttgatggtgtcttttggtgtgcctgtgggggacacagtgcctg
atcagacagggttgctggtgtccatggggaatcccaaacccacaaaatcc
aggatccagtccaagaagggttcatagtatattgcatgtttatctctggg
ttatttagccctcatagtggaggaccatgctgcaacaatctgcagaccta
cagagactaccatgggggccatcctcccagacagcagaggtatgcttatt
tccagttacactgtggtcaaatctgtgtttgggtacttggctgaaaggta
caattgggagtacctaatgtggaaaaccttgccttctgatccctaggaac
tccagggtcttcctttatccctagagttgggctctggattttcctcttga
cctggaggttggaaaggccagttactctctcactgtgttgccctgactga
agctttttcctggctaacagggcagagttggtggttcagcatgtctacct
tgccactcccatctaggataggttacattgcaggctccaaagtgaagtat
gtgactggaaatggacactagatcttacaggtaacaccaggtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_8096108_8097366
seq2: B6Ng01-098L08.b_49_1258

seq1  GAATTCAATATGTCATTCAATAAAATAATACTATTTAAAATATATGCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATGTCATTCAATAAAATAATACTATTTAAAATATATGCCTC  50

seq1  TTCAGTTAGCAAATAAAAAGCACTTCTAAGAAGCAAACAAAAGAGAGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTAGCAAATAAAAAGCACTTCTAAGAAGCAAACAAAAGAGAGTAA  100

seq1  AAGGGCAGGAGCAACATGACCAAAGTAGGTCATATACACGAAAATGTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCAGGAGCAACATGACCAAAGTAGGTCATATACACGAAAATGTCAC  150

seq1  ACATAAACCTATTATCCTGTATAAGTAACATATGCTAACAACAAAGACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAACCTATTATCCTGTATAAGTAACATATGCTAACAACAAAGACTT  200

seq1  CTCCAGGACTTTCAGACATGCCCAATCAGCCCTTCATACACCGCTGAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGACTTTCAGACATGCCCAATCAGCCCTTCATACACCGCTGAACA  250

seq1  AATGACCCTACAAGGTGCTAAACAGGAAGGCTAATTCTTCTAGGCCTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACCCTACAAGGTGCTAAACAGGAAGGCTAATTCTTCTAGGCCTTTC  300

seq1  ATGCTCCATGATCACAGGAAGTTGCTGCTGTATCTTCAGATGACAAAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCCATGATCACAGGAAGTTGCTGCTGTATCTTCAGATGACAAAGTG  350

seq1  AATGCTAAAGAGACCGCTGCAAATTCCTGCCTCTTAACCCCACGTGTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTAAAGAGACCGCTGCAAATTCCTGCCTCTTAACCCCACGTGTTCT  400

seq1  TCCTTAGGAAAGCCACCAGTAAGGCAGAAATTGGGATCAAGGATTTTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAGGAAAGCCACCAGTAAGGCAGAAATTGGGATCAAGGATTTTCAA  450

seq1  GTGAGAAAATAAAGATTTAAGAAAATATATTGCATGAAACGAAAGGACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAAAATAAAGATTTAAGAAAATATATTGCATGAAACGAAAGGACTG  500

seq1  CCCTGACTTGTGACTAACGGAGCCAGAGGATGCACCATAATGTCTTACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACTTGTGACTAACGGAGCCAGAGGATGCACCATAATGTCTTACAG  550

seq1  TGACATGCATTTCAGCAGTCAGTCTGTAGAATGACTTTGGGATGCTGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGCATTTCAGCAGTCAGTCTGTAGAATGACTTTGGGATGCTGGGC  600

seq1  TAAGGTGTCTCACTTCCTTGTCTAATTTTACATACACTGATGCAGATGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTGTCTCACTTCCTTGTCTAATTTTACATACACTGATGCAGATGGG  650

seq1  TTTGTTCCCGGTCTCTCTGGCTACTGAAAGGCCGCTCGGATGACTCTATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCCCGGTCTCTCTGGCTACTGAAAGGCCGCTCGGATGACTCTATC  700

seq1  ACTCAGGGGCTGGGTAGGTCGGAAATTGTCTCCCAAAATCCCATCGCAGC  750
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGGGCTGGGTAGGTCGGAAATTGTCTCCCAAAATCCCATCGCAGC  750

seq1  CCTCCACCAGTTCTGCCCCCTTGACATGTGTCCTCAGCCTTCGAAATTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCACCAGTTCTGCCCCCTTGACATGTGTCCTCAGCCTTCGAAATTCT  800

seq1  TCTATCTGGAAAGAGAAGCAGAATAAAGAAGATTAGTCACTAACCATACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTGGAAAGAGAAGCAGAATAAAGAAGATTAGTCACTAACCATACA  850

seq1  TATGCAAGTTCAGAATTTCATAAGCAATTTAAAATATCCATAAATTATAG  900
      |||||||||||||||||||||||||||||| |||| ||||||||||||||
seq2  TATGCAAGTTCAGAATTTCATAAGCAATTT-AAATTTCCATAAATTATAG  899

seq1  TATAAAAGAGAAAATGAAAGGTGAACCTCAAAAACAGAAAAAGAGAACTG  950
      ||||||||||||||||||| ||||||||| ||||||| ||||||||||||
seq2  TATAAAAGAGAAAATGAAA-GTGAACCTC-AAAACAG-AAAAGAGAACTG  946

seq1  GAAAAAAAAACCCAGTGGTTAAGAAAGCATGCTGCCCTTGCAGAGGACCT  1000
      | |||||||||||||| |||||||||||||||||||||||||||||| ||
seq2  G-AAAAAAAACCCAGT-GTTAAGAAAGCATGCTGCCCTTGCAGAGGA-CT  993

seq1  GAGTCCAGTGCCCAGTACCCACAATAGGGATATAATCCCCACTTCTGGCC  1050
      |||||||||||||||||||||| ||| ||||||| ||||||||||||| |
seq2  GAGTCCAGTGCCCAGTACCCAC-ATA-GGATATATTCCCCACTTCTGG-C  1040

seq1  TCCAGGGGTAC-TGCACACACACACACACACACACACACACACACACACA  1099
      || |  ||||| ||||     |||||||| |||||| | | ||| |||||
seq2  TCAA--GGTACTTGCA-----ACACACAC-CACACA-ATATACA-ACACA  1080

seq1  CACTAAAATAATAATAAATCAAAAAATTTTAAGCCAGTAAGACAGATTTG  1149
      || || | | | |||| || |  ||| ||| |||||||||||| ||||  
seq2  CAGTACATTTAAAATATATAATCAAAATTT-AGCCAGTAAGAC-GATT--  1126

seq1  GTTGTTCCAGACCTAAGGATATTAGACAAGGGCCTTAAAAGAAGACAATA  1199
        ||||| | |||||||   |||| ||| |   ||||| |||| |     
seq2  -GTGTTCGA-ACCTAAG---ATTA-ACATG---CTTAAGAGAACA----T  1163

seq1  GGAAACCGGGTAATTCCATTGTCTACAGAAACCTACTAGGTTTGTTAATG  1249
      |||      |||||||   ||| |||||  |||| ||||  |||||||||
seq2  GGA-----CGTAATTC--ATGTTTACAG--ACCT-CTAG--TTGTTAATG  1201

seq1  TGGAAATCCA  1259
      ||| ||||||
seq2  TGG-AATCCA  1210


seq1: chr4_8213342_8214120
seq2: B6Ng01-098L08.g_67_845 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACACCTGGTGTTACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACCTGGTGTTACC  50

seq1  TGTAAGATCTAGTGTCCATTTCCAGTCACATACTTCACTTTGGAGCCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGATCTAGTGTCCATTTCCAGTCACATACTTCACTTTGGAGCCTGC  100

seq1  AATGTAACCTATCCTAGATGGGAGTGGCAAGGTAGACATGCTGAACCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAACCTATCCTAGATGGGAGTGGCAAGGTAGACATGCTGAACCACC  150

seq1  AACTCTGCCCTGTTAGCCAGGAAAAAGCTTCAGTCAGGGCAACACAGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGCCCTGTTAGCCAGGAAAAAGCTTCAGTCAGGGCAACACAGTGA  200

seq1  GAGAGTAACTGGCCTTTCCAACCTCCAGGTCAAGAGGAAAATCCAGAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTAACTGGCCTTTCCAACCTCCAGGTCAAGAGGAAAATCCAGAGCC  250

seq1  CAACTCTAGGGATAAAGGAAGACCCTGGAGTTCCTAGGGATCAGAAGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTAGGGATAAAGGAAGACCCTGGAGTTCCTAGGGATCAGAAGGCA  300

seq1  AGGTTTTCCACATTAGGTACTCCCAATTGTACCTTTCAGCCAAGTACCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTCCACATTAGGTACTCCCAATTGTACCTTTCAGCCAAGTACCCA  350

seq1  AACACAGATTTGACCACAGTGTAACTGGAAATAAGCATACCTCTGCTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGATTTGACCACAGTGTAACTGGAAATAAGCATACCTCTGCTGTC  400

seq1  TGGGAGGATGGCCCCCATGGTAGTCTCTGTAGGTCTGCAGATTGTTGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGATGGCCCCCATGGTAGTCTCTGTAGGTCTGCAGATTGTTGCAG  450

seq1  CATGGTCCTCCACTATGAGGGCTAAATAACCCAGAGATAAACATGCAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTCCTCCACTATGAGGGCTAAATAACCCAGAGATAAACATGCAATA  500

seq1  TACTATGAACCCTTCTTGGACTGGATCCTGGATTTTGTGGGTTTGGGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATGAACCCTTCTTGGACTGGATCCTGGATTTTGTGGGTTTGGGATT  550

seq1  CCCCATGGACACCAGCAACCCTGTCTGATCAGGCACTGTGTCCCCCACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATGGACACCAGCAACCCTGTCTGATCAGGCACTGTGTCCCCCACAG  600

seq1  GCACACCAAAAGACACCATCAAAAGGACAAAGTAGCAGCCTACAGAGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACCAAAAGACACCATCAAAAGGACAAAGTAGCAGCCTACAGAGTGG  650

seq1  GAGAAGATTTTTACCAACCACACATCTGATAGAAGGCCAATATCCGAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGATTTTTACCAACCACACATCTGATAGAAGGCCAATATCCGAAAT  700

seq1  AAACTCAAGAAACTTGGTTTAAACAAAAAAACAAGTAGGCCAATTTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAAGAAACTTGGTTTAAACAAAAAAACAAGTAGGCCAATTTTAAA  750

seq1  AATGGGGTACAGATCTAAACAGAGAATTC  779
      |||||||||||||||||||||||||||||
seq2  AATGGGGTACAGATCTAAACAGAGAATTC  779


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