BAC Information

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BAC

Clone NameB6Ng01-098P16
Chromosome1 (Build37)4 (Build37)
Map Location 22,900,984 - 22,901,26947,289,952 - 47,291,061
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneKcnq5, LOC435612, LOC100040338, Rims1, Rims1
Downstream geneEG665725, LOC665731, 4933415F23Rik, Rn4.5s-ps4, EG623356, Ogfrl1, LOC665782, B3gat2, Smap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098P16.bB6Ng01-098P16.g
ACCDH908905DH908906
length3421,114
definitionDH908905|Mus musculus domesticus DNA, BAC clone: B6Ng01-098P16, 5' end.DH908906|Mus musculus domesticus DNA, BAC clone: B6Ng01-098P16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(22,900,984 - 22,901,269)(47,289,952 - 47,291,061)
sequence
tttgtttagttctgtaccctattttttaatagggttatttggttttctgg
agtccaacttcttgagttctttatatatatatgtatatatatatatatat
atatatatacatatatatatatatatatgtatatatatatatatatatat
atatatatatatatatatatatatatatatatatatatatatatatatat
atatatatatatatatatatatatatatatatatataggtatatagagat
ataaatatagagacagatacatatatagataaatagatatatatatgtat
atatatatatataggtctatatgtatatatgaatacatatat
gaattccacaccacacataatgccatcctggcttatttggttgcgtgtac
aattttaggtttgaaaccatttgccccagagctttgaaggtaagcattcc
gttatggaggatgagctcagatttcactcccagtcccagcctacctaaag
ccaccgcctcttcccttggcaggttttaggagtcacttccctttgcttgg
tgtgctgaaatcccttggtgcatcgtctctggatgtggattctttaaagc
atgtattctcctacttggtgctaaagagccttggggtggagtggcgttta
atctgggggcctctgggttgtgaagcttctgtgatttgtttttccagaaa
tgttcaacgtagacctcagccttctgctaaggtcaagtgcaggaatgtca
agttactgtctgcttgcgtgctgcttcctccattctctttattctttatt
ctgtttggtcagtaattggaattcccgattatcctcctagctctatttgg
gcattcttcctatgcattttattcatttgtgctggttttcaaagcagttc
tgcatcctgttctttggtcttttctgctgtatttctctccaggatgtttc
tctttctcttagtcctatagagttcttcatttcaaccatcataagttttt
atgtctgtggcccccactgttctcacctcataacagttcgttcttgtttt
gtgatttttgtctcgtcttccctcttctcccggaaagcatcagcgttcgt
agcattcttgttgcgtggtgttctttgtgttgttcctgactttgtctcct
ccccagtgttgccttttctcaaatccgggattctttctgcgtgttggcta
acaaaaactggcatctcatgtagtgcctagcctccgttggcattagaccc
tttaggaagtaggcacgggctacttctgaggcatacaactttctcggtgg
ggatggaaacaccaggaatgtccatctcacgggaaacctcagtaactgat
cctcattttgggtgcccaagggatctttcagctcccgagcctgcccttcc
ctttgcttctgaacaaacctcttactgttctgatgaggataaggcacccc
cccggtgctccttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_22900984_22901269
seq2: B6Ng01-098P16.b_126_396 (reverse)

seq1  ATATATGTGTATATATATATATACTCTTGTACCTTATATATGTGCGTATA  50
      |||||||| |  ||||||| |||    |  ||| |||||||     ||||
seq2  ATATATGTATTCATATATACATA----TAGACC-TATATAT----ATATA  41

seq1  TATATATATATATACTCT-TGTACCT-TATATG----TGTGTACATATAT  94
      |||| ||||||||| ||| | || || ||||||    ||| |  |||| |
seq2  TATACATATATATA-TCTATTTATCTATATATGTATCTGTCTCTATATTT  90

seq1  ACA-CTCT-TGTACCT-TATATATGTGTGTGTGTATATATATATGTATAT  141
      | | |||| | ||||| ||||||| | | | | ||||||||||| |||||
seq2  ATATCTCTATATACCTATATATATATATATATATATATATATATATATAT  140

seq1  ATATATATACTCTTGTACCTTATATGTGTGTGTATATATATATATATATA  191
      |||||||||           ||||| | | | ||||||||||||||||||
seq2  ATATATATA-----------TATATATATATATATATATATATATATATA  179

seq1  TTCTTGTACCTTATATATATATATGTATATATATATATGTATATGTATAT  241
      |   | ||   ||||||||||||| ||||||||||||  ||||| |||||
seq2  TATATATA---TATATATATATATATATATATATATACATATATATATAT  226

seq1  ACATATATACATATATATATATATATATATATACATATATATATA  286
      | |||| || |||||||||||||||||||||||||||||||||||
seq2  ATATATGTATATATATATATATATATATATATACATATATATATA  271

seq1: chr4_47289952_47291061
seq2: B6Ng01-098P16.g_70_1183

seq1  GAATTCCACACCACACATAATGCCATCCTGGCTTATTTGGTTGCGTGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACCACACATAATGCCATCCTGGCTTATTTGGTTGCGTGTAC  50

seq1  AATTTTAGGTTTGAAACCATTTGCCCCAGAGCTTTGAAGGTAAGCATTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAGGTTTGAAACCATTTGCCCCAGAGCTTTGAAGGTAAGCATTCC  100

seq1  GTTATGGAGGATGAGCTCAGATTTCACTCCCAGTCCCAGCCTACCTAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGGAGGATGAGCTCAGATTTCACTCCCAGTCCCAGCCTACCTAAAG  150

seq1  CCACCGCCTCTTCCCTTGGCAGGTTTTAGGAGTCACTTCCCTTTGCTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCGCCTCTTCCCTTGGCAGGTTTTAGGAGTCACTTCCCTTTGCTTGG  200

seq1  TGTGCTGAAATCCCTTGGTGCATCGTCTCTGGATGTGGATTCTTTAAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGAAATCCCTTGGTGCATCGTCTCTGGATGTGGATTCTTTAAAGC  250

seq1  ATGTATTCTCCTACTTGGTGCTAAAGAGCCTTGGGGTGGAGTGGCGTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTCTCCTACTTGGTGCTAAAGAGCCTTGGGGTGGAGTGGCGTTTA  300

seq1  ATCTGGGGGCCTCTGGGTTGTGAAGCTTCTGTGATTTGTTTTTCCAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGGGCCTCTGGGTTGTGAAGCTTCTGTGATTTGTTTTTCCAGAAA  350

seq1  TGTTCAACGTAGACCTCAGCCTTCTGCTAAGGTCAAGTGCAGGAATGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAACGTAGACCTCAGCCTTCTGCTAAGGTCAAGTGCAGGAATGTCA  400

seq1  AGTTACTGTCTGCTTGCGTGCTGCTTCCTCCATTCTCTTTATTCTTTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTGTCTGCTTGCGTGCTGCTTCCTCCATTCTCTTTATTCTTTATT  450

seq1  CTGTTTGGTCAGTAATTGGAATTCCCGATTATCCTCCTAGCTCTATTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGGTCAGTAATTGGAATTCCCGATTATCCTCCTAGCTCTATTTGG  500

seq1  GCATTCTTCCTATGCATTTTATTCATTTGTGCTGGTTTTCAAAGCAGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTTCCTATGCATTTTATTCATTTGTGCTGGTTTTCAAAGCAGTTC  550

seq1  TGCATCCTGTTCTTTGGTCTTTTCTGCTGTATTTCTCTCCAGGATGTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCCTGTTCTTTGGTCTTTTCTGCTGTATTTCTCTCCAGGATGTTTC  600

seq1  TCTTTCTCTTAGTCCTATAGAGTTCTTCATTTCAACCATCATAAGTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCTTAGTCCTATAGAGTTCTTCATTTCAACCATCATAAGTTTTT  650

seq1  ATGTCTGTGGCCCCCACTGTTCTCACCTCATAACAGTTCGTTCTTGTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGTGGCCCCCACTGTTCTCACCTCATAACAGTTCGTTCTTGTTTT  700

seq1  GTGATTTTTGTCTCGTCTTCCCTCTTCTCCCGGAAAGCATCAGCGTTCGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTTTGTCTCGTCTTCCCTCTTCTCCCGGAAAGCATCAGCGTTCGT  750

seq1  AGCATTCTTGTTGCGTGGTGTTCTTTGTGTTGTTCCTGACTTTGTCTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCTTGTTGCGTGGTGTTCTTTGTGTTGTTCCTGACTTTGTCTCCT  800

seq1  CCCCAGTGTTGCCTTTCCTCAGATCCGGGATTCTTTCTGCGTGTTGGCTA  850
      |||||||||||||||| |||| ||||||||||||||||||||||||||||
seq2  CCCCAGTGTTGCCTTTTCTCAAATCCGGGATTCTTTCTGCGTGTTGGCTA  850

seq1  AC-AAAACTGGCATCTCATGTAGTGCCTAGGCCTCCGTTGGCATTAGACC  899
      || |||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACAAAAACTGGCATCTCATGTAGTGCCTA-GCCTCCGTTGGCATTAGACC  899

seq1  ATTAAGGAAGTAGGCACGGGCTACTTCTGAGGCATACAACTTTCTCGGTG  949
       || ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGAAGTAGGCACGGGCTACTTCTGAGGCATACAACTTTCTCGGTG  949

seq1  GGGATGGAAACACCA-GAATGTCCATCTCACAGGACACCTCAGAAACTGA  998
      ||||||||||||||| ||||||||||||||| ||| ||||||| ||||||
seq2  GGGATGGAAACACCAGGAATGTCCATCTCACGGGAAACCTCAGTAACTGA  999

seq1  T-CTCATTTTGGGTGCCC-AGGGATCTTCCAGTTCCAGAGCACTGCCC-T  1045
      | |||||||||||||||| ||||||||| ||| ||| |||| |||||| |
seq2  TCCTCATTTTGGGTGCCCAAGGGATCTTTCAGCTCCCGAGC-CTGCCCTT  1048

seq1  CCCTTTGCTCCTGAACATAACTCTTACTGTTCTTATGGTGTTAAGGCA-C  1094
      ||||||||| ||||||| | ||||||||||||| |||  | ||||||| |
seq2  CCCTTTGCTTCTGAACAAACCTCTTACTGTTCTGATGAGGATAAGGCACC  1098

seq1  CCCCAGGTGCTCCTTG  1110
      |||| |||||||||||
seq2  CCCCCGGTGCTCCTTG  1114